BAC Information

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BAC

Clone NameB6Ng01-224E13
Chromosome11 (Build37)
Map Location 25,771,432 - 25,899,543
singlet/doubletdoublet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224E13.bB6Ng01-224E13.g
ACCGA038785GA038786
length1,1331,185
definitionB6Ng01-224E13.b B6Ng01-224E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,898,399 - 25,899,543)(25,771,432 - 25,772,630)
sequence
gaattcataaataaatggatggcttttgaagctgagcaaggtttgtagat
gaaattcaatgatgctaatgaacatgactgactggagaaaaaaaaagatg
tttaaactagctgttttccgtctagaaagcatagtgtctaggctgactaa
aactaaaactaacagcaaataaccagtacctgtgtgtgaagtgactggac
agaaaaggcttttaatttttgttcacatatagccaagagcactcacagat
ggtcaaacagcatactctgtacagatgtggggcatggttaggtttcatga
ttttctaagcacatccgatctctcttcatgcttgagtttgagtggttgta
gtcttctggttagcaatgtagactatatggaccctgatttggttagctat
cttccatattcaaaatcttacctgctatttagcaatatctaggaagaagc
tagtgagaaacatggaatcacaaaccttacactggacctattccctcaga
gcctctcctttcagtgggtgatcctttcctatgagcttgtaaaatgcaat
tgatggaatctaatacttagactattgactgacacatcaccagacaaaat
taacactaagtgaaaatttcaaagaataaataaaatattatttattcata
attgatggttctcggcctacaatttcctaccttgtttctggaaatttaat
ggctctagttatcttttttaaatttacagcacactttatcattgcatttt
tcaaaatgatggattgagatgacttctatttagttatatattattggact
gaaaggttctcagcctgagctatgaagcagaaaatccaagctccactggt
ctgggctacatccacattaattaagcgagaatcttgggtgtttaggtcta
gatactgatcattttagaggtctctccagctgattctaaccttcattgag
tttgagaaaccactgcccaggccagaaggcacacgagtttaaagccacta
ctgacagtcccataggatctgtagttccctgcagtttacacctaacctgc
tttctaattgatttcagcaacaaagttaaaatatatacttgtagccaggt
ttatttaggagtcacctgcttctgaatatgttg

gaattctcatcaggctgttctgagacggtggttagaaaatgtgtgaaaaa
atgataagcattctgctggtttcttttgagcagctcataaaagctggctg
attaagtaagcctgtgtatgattgtttcttaagaacacattcggagagag
gaaaagtaaagggttgcagcgccctgtcccaactcctatcaagatgttca
tccatgttgctggagtttcctctcccacaaagaataaaggtgggagcaag
attccttcctttagcacgggtgcagccctttgtgacaacagcagcagggg
acccaagttcttaggcctattctgacattgctattcatctggcaaccctg
cagcccaaacttgaagttctcggactttcaatgaggaataggaaacaggt
attcactataaaatgcctgcctgccggggtatgaaaccaaacaagtgttt
cttgtccagctctttgcagctgccctctctgcagatgtggctcccatctg
ggacctgatactaccaactcttggactctcatgatggtaggtagacttct
aatgcaatctagagcaagcatctacagagggtcagaactgagtaaagcat
ggatgccagaaacaaaagaggatgaagcaggcagccacaaaggtagctgg
ggaaaaatcttgaggagggaagggtataacttagatgttaaatagaatct
aagtaaatttaactttttgagtatttttttttttaacttttaaattccac
tgaggccatttccctcctgtttccaaattttcacaggaagattttctgca
gacaagaaactgagaaaaacaattatatccatcacaaagaagagagtgga
aaaggaaggaaaataaaaaaaccaaaaataaagaaaagtggaaagaactg
agagaaatcaccaggagagtccctgcctgtgcctggtttcaggaagtata
gctctaagcacttcctgtctcgcatgctgtctttcccagagatgctgtgt
gcgactgatgcagtgtgagatgtgtatctaagtcttgcaggcagtctctg
cccaagcagagcagacaagcttctgctgctctctttcgcaagttccttgc
caggcaagctcctttctgtcttaaatacgctggattcgcgtagcaacata
attggaaataaagagcctgcatgccattttggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25898399_25899543
seq2: B6Ng01-224E13.b_47_1179 (reverse)

seq1  CAACATATTCCAGAAAGCCAGTGACTTCCTTAAATAAAACTTGCTACAAG  50
      ||||||||| ||| ||||  ||||||  | |||||||| || ||||||||
seq2  CAACATATT-CAG-AAGCAGGTGACT--CCTAAATAAACCTGGCTACAAG  46

seq1  TATATATTTTTACTGTTGTTGGCCTGAAATCAATTTAGAAAGCAGGTTAG  100
      |||||||||| ||| ||||||  |||||||||| ||||||||||||||||
seq2  TATATATTTTAACT-TTGTTG--CTGAAATCAA-TTAGAAAGCAGGTTAG  92

seq1  GTGTAAACCTGCAGGGAACTTACAGATCCTATTGGGACTGTCAGTAGTGG  150
      ||||||| ||||||||||| ||||||||||| ||||||||||||||||||
seq2  GTGTAAA-CTGCAGGGAAC-TACAGATCCTA-TGGGACTGTCAGTAGTGG  139

seq1  CTTTAAACTCGTGTGCCTTTCTGGCCTGGGCAGTGGTTTCTCAAACCTCA  200
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  CTTTAAACTCGTGTGCC-TTCTGGCCTGGGCAGTGGTTTCTCAAA-CTCA  187

seq1  ATGAAGGTTAGAATCAGCTGGAGAGACCTCTAAAATGATCAGTATCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTTAGAATCAGCTGGAGAGACCTCTAAAATGATCAGTATCTAGA  237

seq1  CCTAAACACCCAAGATTCTCGCTTAATTAATGTGGATGTAGCCCAGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACACCCAAGATTCTCGCTTAATTAATGTGGATGTAGCCCAGACCA  287

seq1  GTGGAGCTTGGATTTTCTGCTTCATAGCTCAGGCTGAGAACC-TTCAGTC  349
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGGAGCTTGGATTTTCTGCTTCATAGCTCAGGCTGAGAACCTTTCAGTC  337

seq1  CAATAATATATAACTAAATAGAAGTCATCTCAATCCATCATTTTGAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATATAACTAAATAGAAGTCATCTCAATCCATCATTTTGAAAAA  387

seq1  TGCAATGATAAAGTGTGCTGTAAATTTAAAAAAGATAACTAGAGCCATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGATAAAGTGTGCTGTAAATTTAAAAAAGATAACTAGAGCCATTA  437

seq1  AATTTCCAGAAACAAGGTAGGAAATTGTAGGCCGAGAACCATCAATTATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAGAAACAAGGTAGGAAATTGTAGGCCGAGAACCATCAATTATG  487

seq1  AATAAATAATATTTTATTTATTCTTTGAAATTTTCACTTAGTGTTAATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAATATTTTATTTATTCTTTGAAATTTTCACTTAGTGTTAATTT  537

seq1  TGTCTGGTGATGTGTCAGTCAATAGTCTAAGTATTAGATTCCATCAATTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTGATGTGTCAGTCAATAGTCTAAGTATTAGATTCCATCAATTG  587

seq1  CATTTTACAAGCTCATAGGAAAGGATCACCCACTGAAAGGAGAGGCTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACAAGCTCATAGGAAAGGATCACCCACTGAAAGGAGAGGCTCTG  637

seq1  AGGGAATAGGTCCAGTGTAAGGTTTGTGATTCCATGTTTCTCACTAGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAGGTCCAGTGTAAGGTTTGTGATTCCATGTTTCTCACTAGCTT  687

seq1  CTTCCTAGATATTGCTAAATAGCAGGTAAGATTTTGAATATGGAAGATAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGATATTGCTAAATAGCAGGTAAGATTTTGAATATGGAAGATAG  737

seq1  CTAACCAAATCAGGGTCCATATAGTCTACATTGCTAACCAGAAGACTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAAATCAGGGTCCATATAGTCTACATTGCTAACCAGAAGACTACA  787

seq1  ACCACTCAAACTCAAGCATGAAGAGAGATCGGATGTGCTTAGAAAATCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCAAACTCAAGCATGAAGAGAGATCGGATGTGCTTAGAAAATCAT  837

seq1  GAAACCTAACCATGCCCCACATCTGTACAGAGTATGCTGTTTGACCATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTAACCATGCCCCACATCTGTACAGAGTATGCTGTTTGACCATCT  887

seq1  GTGAGTGCTCTTGGCTATATGTGAACAAAAATTAAAAGCCTTTTCTGTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGCTCTTGGCTATATGTGAACAAAAATTAAAAGCCTTTTCTGTCC  937

seq1  AGTCACTTCACACACAGGTACTGGTTATTTGCTGTTAGTTTTAGTTTTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTCACACACAGGTACTGGTTATTTGCTGTTAGTTTTAGTTTTAG  987

seq1  TCAGCCTAGACACTATGCTTTCTAGACGGAAAACAGCTAGTTTAAACATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTAGACACTATGCTTTCTAGACGGAAAACAGCTAGTTTAAACATC  1037

seq1  TTTTTTTTTCTCCAGTCAGTCATGTTCATTAGCATCATTGAATTTCATCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTCCAGTCAGTCATGTTCATTAGCATCATTGAATTTCATCT  1087

seq1  ACAAACCTTGCTCAGCTTCAAAAGCCATCCATTTATTTATGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCTTGCTCAGCTTCAAAAGCCATCCATTTATTTATGAATTC  1133


seq1: chr11_25771432_25772630
seq2: B6Ng01-224E13.g_68_1252

seq1  GAATTCTCATCAGGCTGTTCTGAGACGGTGGTTAGAAAATGTGTGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCAGGCTGTTCTGAGACGGTGGTTAGAAAATGTGTGAAAAA  50

seq1  ATGATAAGCATTCTGCTGGTTTCTTTTGAGCAGCTCATAAAAGCTGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAGCATTCTGCTGGTTTCTTTTGAGCAGCTCATAAAAGCTGGCTG  100

seq1  ATTAAGTAAGCCTGTGTATGATTGTTTCTTAAGAACACATTCGGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTAAGCCTGTGTATGATTGTTTCTTAAGAACACATTCGGAGAGAG  150

seq1  GAAAAGTAAAGGGTTGCAGCGCCCTGTCCCAACTCCTATCAAGATGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAAAGGGTTGCAGCGCCCTGTCCCAACTCCTATCAAGATGTTCA  200

seq1  TCCATGTTGCTGGAGTTTCCTCTCCCACAAAGAATAAAGGTGGGAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTTGCTGGAGTTTCCTCTCCCACAAAGAATAAAGGTGGGAGCAAG  250

seq1  ATTCCTTCCTTTAGCACGGGTGCAGCCCTTTGTGACAACAGCAGCAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCCTTTAGCACGGGTGCAGCCCTTTGTGACAACAGCAGCAGGGG  300

seq1  ACCCAAGTTCTTAGGCCTATTCTGACATTGCTATTCATCTGGCAACCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGTTCTTAGGCCTATTCTGACATTGCTATTCATCTGGCAACCCTG  350

seq1  CAGCCCAAACTTGAAGTTCTCGGACTTTCAATGAGGAATAGGAAACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAACTTGAAGTTCTCGGACTTTCAATGAGGAATAGGAAACAGGT  400

seq1  ATTCACTATAAAATGCCTGCCTGCCGGGGTATGAAACCAAACAAGTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTATAAAATGCCTGCCTGCCGGGGTATGAAACCAAACAAGTGTTT  450

seq1  CTTGTCCAGCTCTTTGCAGCTGCCCTCTCTGCAGATGTGGCTCCCATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCAGCTCTTTGCAGCTGCCCTCTCTGCAGATGTGGCTCCCATCTG  500

seq1  GGACCTGATACTACCAACTCTTGGACTCTCATGATGGTAGGTAGACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGATACTACCAACTCTTGGACTCTCATGATGGTAGGTAGACTTCT  550

seq1  AATGCAATCTAGAGCAAGCATCTACAGAGGGTCAGAACTGAGTAAAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATCTAGAGCAAGCATCTACAGAGGGTCAGAACTGAGTAAAGCAT  600

seq1  GGATGCCAGAAACAAAAGAGGATGAAGCAGGCAGCCACAAAGGTAGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCAGAAACAAAAGAGGATGAAGCAGGCAGCCACAAAGGTAGCTGG  650

seq1  GGAAAAATCTTGAGGAGGGAAGGGTATAACTTAGATGTTAAATAGAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATCTTGAGGAGGGAAGGGTATAACTTAGATGTTAAATAGAATCT  700

seq1  AAGTAAATTTAACTTTTTGAGTA-TTTTTTTTTTAACTTTTAAATTCCAC  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGTAAATTTAACTTTTTGAGTATTTTTTTTTTTAACTTTTAAATTCCAC  750

seq1  TGAGGCCATTTCCCTCCTGTTTCCAAATTTTCACAGGAAGATTTTCTGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCATTTCCCTCCTGTTTCCAAATTTTCACAGGAAGATTTTCTGCA  800

seq1  GACAAGAAACTGAGAAAAACAATTATATCCATCACAAAGAAGAGAGTGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAACTGAGAAAAACAATTATATCCATCACAAAGAAGAGAGTGGA  850

seq1  AAAGGAAGGAAAATAAAAAAACCAAAAATAAAGAAAAAGTGGAAAGAACT  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGGAAGGAAAATAAAAAAACCAAAAATAAAG-AAAAGTGGAAAGAACT  899

seq1  GAGAGAAATCACCAGGAGAGTCCCTGCCTGTGCCTGGGTTTCAGGAAGTA  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGAGAAATCACCAGGAGAGTCCCTGCCTGTGCCT-GGTTTCAGGAAGTA  948

seq1  TAGCTCTAAGCACTTCCTGTCTTCGCATGCTTGTCTTTCCCAGAGATGCT  999
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  TAGCTCTAAGCACTTCCTGTC-TCGCATGC-TGTCTTTCCCAGAGATGCT  996

seq1  GTGGTGCGACTGAATGGCCAGTGTGAGGAAGGGTGTATCTAGGTCCTGGC  1049
      || ||||||||| |||  |||||||||     ||||||||| || || ||
seq2  GT-GTGCGACTG-ATG--CAGTGTGAG---ATGTGTATCTAAGT-CTTGC  1038

seq1  AGCGCAGTCCTTCTGCCCCAGGCAGAGCAGACAAGCTTCTGCTGCTCTCT  1099
      || ||||||  |||| |||| |||||||||||||||||||||||||||||
seq2  AG-GCAGTC--TCTG-CCCAAGCAGAGCAGACAAGCTTCTGCTGCTCTCT  1084

seq1  TTCGC-AGTCCCT--GCAAGCAAGCTCCTTTTCTGTCTT-AATCAGCTCT  1145
      ||||| ||| |||   || ||||||||| |||||||||| |||  |||  
seq2  TTCGCAAGTTCCTTGCCAGGCAAGCTCC-TTTCTGTCTTAAATACGCT-G  1132

seq1  GATCTGCTTTTAGCACACAATAATGGGAATAAAGAG-CTGCATG-CATTT  1193
      |||  ||   ||||| |||  | ||| ||||||||| ||||||| |||||
seq2  GATTCGC--GTAGCA-ACATAATTGGAAATAAAGAGCCTGCATGCCATTT  1179

seq1  TGGCAT  1199
      ||||||
seq2  TGGCAT  1185


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