BAC Information

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BAC

Clone NameB6Ng01-224I09
Chromosome11 (Build37)
Map Location 116,797,789 - 116,798,492
singlet/doubletsinglet
Overlap geneMgat5b
Upstream geneSap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11
Downstream geneLOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224I09.bB6Ng01-224I09.g
ACCGA038959GA038960
length102707
definitionB6Ng01-224I09.b B6Ng01-224I09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aaggatcatctgcaactacatagcaagttcagagccagcccaggctacag
agaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tg
gaattctgcttaaagtgcaggaagaagtcacagccacattcttgttgggg
agggaaataaagccttttttttttccaactgcgttggtggctatgtgggg
gttgggttcgggaactgcagccccagggaggtcagcctcctgggtgtgtc
tgtgagtgtgaggtgggcatgtttccctcttaggatgatattaatctcaa
ctttacaatatgggttccattcttctcagatcccgggctggccgaggctc
tgggtttgacacaaggctcgccgacaggaagacattttggtaaaccaccc
aaagctgatcttctttagggctggagaggggccaggctggcaaggaggga
ctacaagatatggtgatgtcaccgaccagctagaccaccggaggaaccat
ctcagtgggtcagggtgaggacaggccaagttcaaggtaacctgcaaggg
accaaagctagagaagggccaggtgaccagggccctggggccagcgggca
gcagaggggggttgggccaggaaacccaggcggctctgggttcttcctgc
tgtatcttctagtctgtgctgaggcaggaggtctgcagagtagagcctaa
gagtggccaacactcacccagtgtgctagttacgttttctcacggctgcg
gcaacatacccaacaaaagcaaactcaaggaaggaatgggagggagggag
ggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116797789_116798492
seq2: B6Ng01-224I09.g_66_772

seq1  GAATTCTGCTTAAAGTGCAGGAAGAAGTCACAGCCACATTCTTGTTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTAAAGTGCAGGAAGAAGTCACAGCCACATTCTTGTTGGGG  50

seq1  AGGGAAATAAAGCCTTTTTTTTTTCCAACTGCGTTGGTGGCTATGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATAAAGCCTTTTTTTTTTCCAACTGCGTTGGTGGCTATGTGGGG  100

seq1  GTTGGGTTCGGGAACTGCAGCCCCAGGGAGGTCAGCCTCCTGGGTGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTTCGGGAACTGCAGCCCCAGGGAGGTCAGCCTCCTGGGTGTGTC  150

seq1  TGTGAGTGTGAGGTGGGCATGTTTCCCTCTTAGGATGATATTAATCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTGAGGTGGGCATGTTTCCCTCTTAGGATGATATTAATCTCAA  200

seq1  CTTTACAATATGGGTTCCATTCTTCTCAGATCCCGGGCTGGCCGAGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAATATGGGTTCCATTCTTCTCAGATCCCGGGCTGGCCGAGGCTC  250

seq1  TGGGTTTGACACAAGGCTCGCCGACAGGAAGACATTTTGGTAAACCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGACACAAGGCTCGCCGACAGGAAGACATTTTGGTAAACCACCC  300

seq1  AAAGCTGATCTTCTTTAGGGCTGGAGAGGGGCCAGGCTGGCAAGGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGATCTTCTTTAGGGCTGGAGAGGGGCCAGGCTGGCAAGGAGGGA  350

seq1  CTACAAGATATGGTGATGTCACCGACCAGCTAGACCACCGGAGGAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGATATGGTGATGTCACCGACCAGCTAGACCACCGGAGGAACCAT  400

seq1  CTCAGTGGGTCAGGGTGAGGACAGGCCAAGTTCAAGGTAACCTGCAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGTCAGGGTGAGGACAGGCCAAGTTCAAGGTAACCTGCAAGGG  450

seq1  ACCAAAGCTAGAGAAGGGCCAGGTGACCAGGGCCCTGGGGCCAGCGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCTAGAGAAGGGCCAGGTGACCAGGGCCCTGGGGCCAGCGGGCA  500

seq1  GCAGAGGGGGGTTGGGCCAGGAAACCCAGGCGGCTCTGGGTTCTTCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGGGGTTGGGCCAGGAAACCCAGGCGGCTCTGGGTTCTTCCTGC  550

seq1  TGTATCTTCTAGTCTGTGCTGAGGCAGGAGGTCTGCAGAGTAGAGCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTCTAGTCTGTGCTGAGGCAGGAGGTCTGCAGAGTAGAGCCTAA  600

seq1  GAGTGGCCAACACTCACCCAGTGTGCTAGTTACG-TTTCTCACGGCTGCG  649
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGTGGCCAACACTCACCCAGTGTGCTAGTTACGTTTTCTCACGGCTGCG  650

seq1  GCAACATACCCAACAAAAGC-AACTCAAGGAAGGAA-GGGAGGGAGGGAG  697
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  GCAACATACCCAACAAAAGCAAACTCAAGGAAGGAATGGGAGGGAGGGAG  700

seq1  GGAGGGA  704
      |||||||
seq2  GGAGGGA  707