BAC Information

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BAC

Clone NameB6Ng01-225N11
Chromosome11 (Build37)
Map Location 58,466,771 - 58,467,854
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58
Downstream geneOlfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225N11.bB6Ng01-225N11.g
ACCGA039933GA039934
length1,0241,089
definitionB6Ng01-225N11.b B6Ng01-225N11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctataagacttttaaagatgagctaacaccaatactcctattcaa
tttgtttcaccaaacagaaataagaggaacaaatttatgagacctcaatt
accccatttcccaaaccacacaaagactcaacaaagaaagagaattactg
atcatttcccttatgaacatatatgcaaaaatactcaataaaattctcgc
aaactgaatcctagaatatatcacaaagatcatccatcatgatcaagtag
gcttcatcccagagacactaggttggttcaatattagaaaatcagtcaat
gtaatccatcaaataaagaaaaataaacccccatgagcatctcatgagat
cccagaaaagtttttgacaaaatctaacaccccttttatggtaataatat
tggagaaactagggataaaaggagacatacctcaacataataaaagcaat
tttcagcaagcctatagctaacatattaaatggagagagattcataccaa
ctccactaaaatctggaacaaaacaaggctgtcccttctctccatatata
ttcaatatattaattgatggtctagttagggcagtaagacagctaaagga
ggaggtaggtcccagagcctgacactattactgaggctatggagtgctca
caaaaaggacctaccatgaccacactccagaagacccaacaagcagctga
aagagtcagatacagatatttgcacccaaccaatggacagaagcacctga
cccctgttgttgaaattaagaaaaggctgaaagaagttaaggagaagggt
gaccctgtaggaggaccagcagtctcaattaatctgaacccccaagatct
ctcaaacacaggatcaccaaacggatagcatacaccagctgatatgaggc
ccccgacacacatacagtagaggactgccaggtctgtgttcattcagaga
tgatgcacctaaccttcagagactggaggcctcagagactttagagttca
gtggggttggaaggggtggggggc
gaattcctagaatacagagaatgatgtctttaataactcatattgggttg
gtgactgacatcttgataagtgacatggtaagatggcaagactcagggat
gcccttgagatgggcatgatggtctccatgacaggaagggtagtcgtggg
acttgagagtttctgtggtttccctcccagaaaaatgcttccctgtccct
gtgagtggttggagcttccatgagagatgtcacctcaggccagtcattgg
gccactggggaggaagctctaggatggattcaagatgtttgctccaccaa
gatcatgaacaaagatggcttgtgtggtctgtgaactacccatggagtca
tgtaaagacctgtcatttcctatatgtaaattagagacagagcagagaag
tatctttgtataaccaattaaaaagatctagaaagaaagctatgccaata
tcatgttagaagtcacaatgtcagccataaaaaaatatccatgcaaaaga
aaaaaaatcgtgaactataaggcagagctggagaagaagatgaaaatttt
ggtaaaatatcaagatatagataaccaaaattgccaataattcctataga
gttggcatttcagaactttgtgttttaacgtttgtgtaacacttatttag
cagacacagatacagagaggtgacaggaggtggcctacagtgacctttaa
gagtttcattaaaaaaaaaaaaacccaacaacacagaacactttgctgta
aaaataaatcaaatatcattatcatttcaacaccatctttacatagtatt
taagtaagagctaattctggccactcatcagtaagaacctcaaatgtctc
cattatacaaggattcctgcataggatccacatccagaagctgcgcctgc
gtgatttgattgaggccttaacagccagtatcctggcgcagaggcagcaa
gcaaacgcgtgttgttcccgtgcccaggagattcatcactggtggtgtgc
acagagtgtaaggtgggaaagtctgctcttcaagcccagttacttagcaa
ctaaatctggaaaaaatgtttaaataatacaaaacttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58466771_58467854
seq2: B6Ng01-225N11.g_70_1158 (reverse)

seq1  TAAAATTTTGTATTATTTTAAACATTTTTTTCAGGATTTAGTGGCTAAGT  50
      |||| |||||||||| |||||||||||||| || |||||||| |||||||
seq2  TAAAGTTTTGTATTA-TTTAAACATTTTTTCCA-GATTTAGTTGCTAAGT  48

seq1  AACT-GGCTTG-AGAGCAGACTTTCC--ACTTACACTCTGTGCACAC--A  94
      |||| |||||| ||||||||||||||   ||||||||||||||||||   
seq2  AACTGGGCTTGAAGAGCAGACTTTCCCACCTTACACTCTGTGCACACCAC  98

seq1  CAGTGATGAATCTCCTGGGCACGGGAACAACACGCGTTTGCTTGCTGCCT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGAATCTCCTGGGCACGGGAACAACACGCGTTTGCTTGCTGCCT  148

seq1  CTGCG-CAGGATACTGGCTGTTAAGGCCTCAATCAAATCACGCAGGCGCA  193
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCCAGGATACTGGCTGTTAAGGCCTCAATCAAATCACGCAGGCGCA  198

seq1  GCTTCTGGATGTGGATCCTATGCAGGAATCCTTGTATAATGGAGACATTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGATGTGGATCCTATGCAGGAATCCTTGTATAATGGAGACATTT  248

seq1  GAGGTTCTTACTGATGAGTGGCCAGAATTAGCTCTTACTTAAATACTATG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTTACTGATGAGTGGCCAGAATTAGCTCTTACTTAAATACTATG  298

seq1  TAAAGATGGTGTTGAAATGATAATGATATTTGATTTATTTTTACAGCAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGGTGTTGAAATGATAATGATATTTGATTTATTTTTACAGCAAA  348

seq1  GTGTTCTGTGTTGTTGGGTTTTTTTTTTTTTAATGAAACTCTTAAAGGTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGTGTTGTTGGGTTTTTTTTTTTTTAATGAAACTCTTAAAGGTC  398

seq1  ACTGTAGGCCACCTCCTGTCACCTCTCTGTATCTGTGTCTGCTAAATAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGCCACCTCCTGTCACCTCTCTGTATCTGTGTCTGCTAAATAAG  448

seq1  TGTTACACAAACGTTAAAACACAAAGTTCTGAAATGCCAACTCTATAGGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACAAACGTTAAAACACAAAGTTCTGAAATGCCAACTCTATAGGA  498

seq1  ATTATTGGCAATTTTGGTTATCTATATCTTGATATTTTACCAAAATTTTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGCAATTTTGGTTATCTATATCTTGATATTTTACCAAAATTTTC  548

seq1  ATCTTCTTCTCCAGCTCTGCCTTATAGTTCACGATTTTTTTTCTTTTGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTCTCCAGCTCTGCCTTATAGTTCACGATTTTTTTTCTTTTGCA  598

seq1  TGGATATTTTTTTATGGCTGACATTGTGACTTCTAACATGATATTGGCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTTTTTTATGGCTGACATTGTGACTTCTAACATGATATTGGCAT  648

seq1  AGCTTTCTTTCTAGATCTTTTTAATTGGTTATACAAAGATACTTCTCTGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTTTCTAGATCTTTTTAATTGGTTATACAAAGATACTTCTCTGC  698

seq1  TCTGTCTCTAATTTACATATAGGAAATGACAGGTCTTTACATGACTCCAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTAATTTACATATAGGAAATGACAGGTCTTTACATGACTCCAT  748

seq1  GGGTAGTTCACAGACCACACAAGCCATCTTTGTTCATGATCTTGGTGGAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTTCACAGACCACACAAGCCATCTTTGTTCATGATCTTGGTGGAG  798

seq1  CAAACATCTTGAATCCATCCTAGAGCTTCCTCCCCAGTGGCCCAATGACT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCTTGAATCCATCCTAGAGCTTCCTCCCCAGTGGCCCAATGACT  848

seq1  GGCCTGAGGTGACATCTCTCATGGAAGCTCCAACCACTCACAGGGACAGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGGTGACATCTCTCATGGAAGCTCCAACCACTCACAGGGACAGG  898

seq1  GAAGCATTTTTCTGGGAGGGAAACCACAGAAACTCTCAAGTCCCACGACT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTTTTCTGGGAGGGAAACCACAGAAACTCTCAAGTCCCACGACT  948

seq1  ACCCTTCCTGTCATGGAGACCATCATGCCCATCTCAAGGGCATCCCTGAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCTGTCATGGAGACCATCATGCCCATCTCAAGGGCATCCCTGAG  998

seq1  TCTTGCCATCTTACCATGTCACTTATCAAGATGTCAGTCACCAACCCAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCATCTTACCATGTCACTTATCAAGATGTCAGTCACCAACCCAAT  1048

seq1  ATGAGTTATTAAAGACATCATTCTCTGTATTCTAGGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTATTAAAGACATCATTCTCTGTATTCTAGGAATTC  1089