BAC Information

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BAC

Clone NameB6Ng01-229N01
Chromosome11 (Build37)
Map Location 85,269,155 - 85,269,845
singlet/doubletsinglet
Overlap geneBcas3
Upstream geneAatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229N01.g
ACCGA042846
length699
definitionB6Ng01-229N01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctgtgcactccttcctgtatctgacagggatgtgtcacacct
ttttgctccctgctcacctgactttatctactgagagtttcttccttgcc
atctggtgtcctgtttcttgtaaatgtaaaaattttctacctcataattg
tatacacaccggggttttagttaggcgcttttcatgatttctgatggatg
acagggtggagtgtggtgcggagaaggcaagcagaacaatttattgccag
atccagatctaggaccagagccccggctagttagtattaaaaattctttt
tggtactttaaaaattgtttagcattttattcatggacattacattttgc
tggtatagttttcggttatctttgtctttattgacccctgggcactaggc
tgtttgtagcgattgtgtttgatctgtgtggtgactggagtgtcgggcga
taggtgaggacggagctctttctcctttcttttatcagtcctgccaggtt
tataagtggaattggtggaatgcatgaccccttcctcctcttcctcctcc
tcctccttttttttttttttttttaaattccggtgccccattttgcttac
tattgagtttctgttattggtcccatctatatatgtttgggttatgtttt
tgtgattatgccactctttttaggccctgaactgtgactaattggcaag
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_85269155_85269845
seq2: B6Ng01-229N01.g_68_766

seq1  GAATTCTCCTGTGCACTCCTTCCTGTAGCTGACAGTAATGTGTCACACCT  50
      ||||||||||||||||||||||||||| |||||||  |||||||||||||
seq2  GAATTCTCCTGTGCACTCCTTCCTGTATCTGACAGGGATGTGTCACACCT  50

seq1  TTTTGCTCCCTGCTCACCTGACTTTATCTACTGAGAGTTTCTTCCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCCCTGCTCACCTGACTTTATCTACTGAGAGTTTCTTCCTTGCC  100

seq1  ATCTGGTGTCCTGTTTCTTGTAAATGTAAAACTTTTCTACCTCAGAATTG  150
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ATCTGGTGTCCTGTTTCTTGTAAATGTAAAAATTTTCTACCTCATAATTG  150

seq1  TATACACACCGGGGTTTTAGTTAGGCGCTTTTCATGATTTCTGATGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACACCGGGGTTTTAGTTAGGCGCTTTTCATGATTTCTGATGGATG  200

seq1  ACAGGGTGGAGTGTGGTGCGGAGAAGGCAAGCAGAACAATTTATTGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGGAGTGTGGTGCGGAGAAGGCAAGCAGAACAATTTATTGCCAG  250

seq1  ATCCAGATCTAGGACCAGAGCCCCGGCTAGTTAGTATTAAAAATTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATCTAGGACCAGAGCCCCGGCTAGTTAGTATTAAAAATTCTTTT  300

seq1  TGGTACTTTAAAAATTGTTTAGCATTTTATTCATGGACATTACATTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTTAAAAATTGTTTAGCATTTTATTCATGGACATTACATTTTGC  350

seq1  TGGTATAGTTTTCGGTTATCTTTGTCTTTATTGACCCCTGGGCACTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAGTTTTCGGTTATCTTTGTCTTTATTGACCCCTGGGCACTAGGC  400

seq1  TGTTTGTAGCGATTGTGTTTGATCTGTGTGGTGACTGGAGTGTCGGGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAGCGATTGTGTTTGATCTGTGTGGTGACTGGAGTGTCGGGCGA  450

seq1  TAGGTGAGGACGGAGCTCTTTCTCCTTTCTTTTATCAGTCCTGCCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAGGACGGAGCTCTTTCTCCTTTCTTTTATCAGTCCTGCCAGGTT  500

seq1  TATAAGTGGAATTGGTGGAATGCATGACCCCTTCCTCCTCTTCCTCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTGGAATTGGTGGAATGCATGACCCCTTCCTCCTCTTCCTCCTCC  550

seq1  TCCTCCTTTTTTTTTTTTTTTTTTAAATTCCGGTGCCC--ATTTGCTTAC  598
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  TCCTCCTTTTTTTTTTTTTTTTTTAAATTCCGGTGCCCCATTTTGCTTAC  600

seq1  T-TTGAGTTTCTGTTATTGGTCCCATCTATATATGTTT-GGTTATG-TTT  645
      | |||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  TATTGAGTTTCTGTTATTGGTCCCATCTATATATGTTTGGGTTATGTTTT  650

seq1  TGTGATTATGCCACTC-TTTTATGCACTG-ACTGTGACT-AGTGGCAAG  691
      |||||||||||||||| ||||| || ||| ||||||||| | |||||||
seq2  TGTGATTATGCCACTCTTTTTAGGCCCTGAACTGTGACTAATTGGCAAG  699