BAC Information

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BAC

Clone NameB6Ng01-229N09
Chromosome11 (Build37)
Map Location 85,269,155 - 85,270,148
singlet/doubletsinglet
Overlap geneBcas3
Upstream geneAatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229N09.bB6Ng01-229N09.g
ACCGA042859GA042860
length1,2181,003
definitionB6Ng01-229N09.b B6Ng01-229N09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaagtacataaccccatacacaagcatattaaattaaattatt
taaaattaaatcttaaaataatcaaactgttcccacaagagccatatata
gtaggacaaaagccccaataccagggatgagaagccttttgaattcttgg
tcagcattctccaggagactcacaaaacattatagactatggctattgcc
ctggtatgtgatcagatgtgaaaggaagacaccatgtacttcagacacag
aacccacagggtctgagcttgatttgaccttaaggtgagtaccccgagga
ccagctttcctgcaccaaatttgtcacgtgagctcccagctatgcaaacc
agctatgacatttatgaaccacaacaatgaccagcatgttacaaaacatt
aagggcacactagtggcacctttgccttggtggtaagcaacagcttgcta
attggaccaagacctgcttaaaaaggaacatcattcctggtactgaaagc
ccagccaaccatctgggactacaccaggcatacaattgtgaggacaacct
acagcctccacttttactaggccagcacaatccctagctaatagtttcaa
tatttatcattatacctacaggtaggttacttctcaactttcatcaagga
aacttctctttgcaacagaagaaagaccgttacagaaagctataaaatat
caaaatgcagagttgtagagtccagtcccaatgaatatatatctacaata
aaggctcagggatgattatggaagaggaaactgaatgattctaagagcca
gaggtacaggaagtttgctgtgagattgtgtcttctacaaagtgtatgcc
catgaagtctcaccaatatggctgcctaacataacctagacaaggataac
accaacagacaagtagtatgggaaagggggagtattcagaaagcctcact
ctacacaaaaccctaacaagcactaaggactacaggagggggagaaaata
gtcttttcctaaggaagagcacacaaatgacgcccaatactaaatggttc
aggccttgaaaacatacagtacatttatgcagaattggagcaaggcctgc
aatcatactctttgtgataaacatacccacgaacccaacaccaacaattt
aagagaagagtcattgcagttgaagatcatgcatgggtggggaaccttgt
ctcaaaggcagaagtctg
gaattctcctgtgcactccttcctgtagctgacagtaatgtgtcacacct
ttttgctccctgctcacctgactttatctactgagagtttcttccttgcc
atctggtgtcctgtttcttgtaaatgtaaaacttttctacctcagaattg
tatacacaccggggttttagttaggcgcttttcatgatttctgatggatg
acagggtggagtgtggtgcggagaaggcaagcagaacaatttattgccag
atccagatctaggaccagagccccggctagttagtattaaaaattctttt
tggtactttaaaaattgtttagcattttattcatggacattacattttgc
tggtatagttttcggttatctttgtctttattgacccctgggcactaggc
tgtttgtagcgattgtgtttgatctgtgtggtgactggagtgtcgggcga
taggtgaggacggagctctttctcctttcttttatcagtcctgccaggtt
tataagtggaattggtggaatgcatgaccccttcctcctcttcctcctcc
tcctccttttttttttttttttttaaattccggtgcccatttgcttactt
tgagtttctgttattggtcccatctatatatgtttggttatgttttgtga
ttatgccactcttttatgcactgactgtgactagtggcaagtactgcagt
gacttgcatgcaaaccttaacttggttggttactatttatattcttattc
ttccactttacagatttaaggtacttttaaaataggatacttgaaaatta
ttctgtgttttatatattgatttacgtataatttagcttgattattttgt
agtttcatggtctcttgaattcataatttttcagaataccgttctttact
ttatatataggtttggaggaggctcttgaacctttgatcctcctcctcag
cctgctggcctgcttccaccacgccttgggaagggaaaggttcttgctca
ctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_85269155_85270148
seq2: B6Ng01-229N09.g_66_1068

seq1  GAATTCTCCTGTGCACTCCTTCCTGTAGCTGACAGTAATGTGTCACACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTGCACTCCTTCCTGTAGCTGACAGTAATGTGTCACACCT  50

seq1  TTTTGCTCCCTGCTCACCTGACTTTATCTACTGAGAGTTTCTTCCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCCCTGCTCACCTGACTTTATCTACTGAGAGTTTCTTCCTTGCC  100

seq1  ATCTGGTGTCCTGTTTCTTGTAAATGTAAAACTTTTCTACCTCAGAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTGTCCTGTTTCTTGTAAATGTAAAACTTTTCTACCTCAGAATTG  150

seq1  TATACACACCGGGGTTTTAGTTAGGCGCTTTTCATGATTTCTGATGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACACCGGGGTTTTAGTTAGGCGCTTTTCATGATTTCTGATGGATG  200

seq1  ACAGGGTGGAGTGTGGTGCGGAGAAGGCAAGCAGAACAATTTATTGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGGAGTGTGGTGCGGAGAAGGCAAGCAGAACAATTTATTGCCAG  250

seq1  ATCCAGATCTAGGACCAGAGCCCCGGCTAGTTAGTATTAAAAATTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATCTAGGACCAGAGCCCCGGCTAGTTAGTATTAAAAATTCTTTT  300

seq1  TGGTACTTTAAAAATTGTTTAGCATTTTATTCATGGACATTACATTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTTAAAAATTGTTTAGCATTTTATTCATGGACATTACATTTTGC  350

seq1  TGGTATAGTTTTCGGTTATCTTTGTCTTTATTGACCCCTGGGCACTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAGTTTTCGGTTATCTTTGTCTTTATTGACCCCTGGGCACTAGGC  400

seq1  TGTTTGTAGCGATTGTGTTTGATCTGTGTGGTGACTGGAGTGTCGGGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAGCGATTGTGTTTGATCTGTGTGGTGACTGGAGTGTCGGGCGA  450

seq1  TAGGTGAGGACGGAGCTCTTTCTCCTTTCTTTTATCAGTCCTGCCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAGGACGGAGCTCTTTCTCCTTTCTTTTATCAGTCCTGCCAGGTT  500

seq1  TATAAGTGGAATTGGTGGAATGCATGACCCCTTCCTCCTCTTCCTCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTGGAATTGGTGGAATGCATGACCCCTTCCTCCTCTTCCTCCTCC  550

seq1  TCCTCCTTTTTTTTTTTTTTTTTTAAATTCCGGTGCCCATTTGCTTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTTTTTTTTTTTTTTTTAAATTCCGGTGCCCATTTGCTTACTT  600

seq1  TGAGTTTCTGTTATTGGTCCCATCTATATATGTTTGGTTATGTTTTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCTGTTATTGGTCCCATCTATATATGTTTGGTTATGTTTTGTGA  650

seq1  TTATGCCACTCTTTTATGCACTGACTGTGACTAGTGGCAAGTACTGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCACTCTTTTATGCACTGACTGTGACTAGTGGCAAGTACTGCAGT  700

seq1  GACTTGCATGC-AACCTTAACTTGGTTGGTTACTATTTATATTCTTATTC  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCATGCAAACCTTAACTTGGTTGGTTACTATTTATATTCTTATTC  750

seq1  TTCCACTTTACAGATTTAAGGTACTTTTAAAAATAGGATACTTG-AAATT  798
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TTCCACTTTACAGATTTAAGGTACTTTT-AAAATAGGATACTTGAAAATT  799

seq1  A-TCTGTGTTTTTATATATTGATTTACGTATAATTTAGCTTGATTATTTT  847
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTG-TTTTATATATTGATTTACGTATAATTTAGCTTGATTATTTT  848

seq1  GTAGTTTCATGGTCTCTTGATTTCATAATTTTTCAG-ATA-CGATC-TTA  894
      |||||||||||||||||||| ||||||||||||||| ||| || || |||
seq2  GTAGTTTCATGGTCTCTTGAATTCATAATTTTTCAGAATACCGTTCTTTA  898

seq1  CTATATATATAG--TTTGAGGA-GCTCTTGAACTTTTGATCCTCCTTCCT  941
      || |||||||||  || ||||| |||||||||| ||||||||||| ||||
seq2  CTTTATATATAGGTTTGGAGGAGGCTCTTGAACCTTTGATCCTCC-TCCT  947

seq1  CAGCCTGCTGGCCTGCTT-CACCACGCCTGGGGAAGGG-AAGGTTC-TGC  988
      |||||||||||||||||| |||||||||| |||||||| ||||||| |||
seq2  CAGCCTGCTGGCCTGCTTCCACCACGCCTTGGGAAGGGAAAGGTTCTTGC  997

seq1  TCACTG  994
      ||||||
seq2  TCACTG  1003