BAC Information

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BAC

Clone NameB6Ng01-230A24
Chromosome11 (Build37)
Map Location 114,164,131 - 114,326,318
singlet/doubletdoublet
Overlap geneLOC634710, 4932435O22Rik
Upstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
Downstream geneRpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230A24.bB6Ng01-230A24.g
ACCGA043028GA043029
length1,000977
definitionB6Ng01-230A24.b B6Ng01-230A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,164,131 - 114,165,112)(114,325,353 - 114,326,318)
sequence
gaattcctctgtggaaagtttcaaggtgggggaactgtggcaatgattag
gccagatgttctggctctggggatcctgggccctcttgaaagattggcat
taatgaaccagtcctttccctggaaaatgatcacctcttggctgtattag
agacagctgttgttatctatgctggtctaaaaagaaatgattagacagaa
tctgaataatgatttagattgattaccctcagataaccctcagtggagac
acgaaaatagtacagaaagccgatgtgttcagaacgtcgttaattactta
gatctgggacctagcgtgtcattagtattctataagtggtgggaggaaag
agagaccccttctcccacgcagtctcaggcctcctccctgttcacactag
aggctggaccccttatggtcaaagtctgagcatccattgaaaacctgggc
aaccgctcggcagtggtggcgcatgcctttaatcccagcacttgggaggc
agaggcaggtggatttctgagttcgaggccagtctggtctacagagtgag
ttccaggacagccagggctatacagagaaaccctgtctcgaaaaacggaa
agaaagaaagaaagaaagaaaagaaagaaagacagaaagaaagaaagaca
gacagacatactgacagaaaagaaagaaagaaagatagaaaggaaaggaa
ggaaggaaggaatgaaggaaggaaggaagaaaaccagggcaaccaataca
accaacatcaaagaaggcagattgtctcacattggcctgtctgctcttct
gtgtataggcttccaatgtgaaggctgggcctgatagaaaaactggtatc
aaaataaaaacctttgaaagcagaactgcagcccctttcatagggaacta
gcccttgaacccaattgtcttcttccatgaaaagctgccctggcatctcc
gttgaaaaagtcggttcccatcccccttgtgcctaggaaaactctgttac

gaattcagcccgctgcttctcaggagtggaggagtctgaacgcatgcatg
ctctgaacattctcaagagggttagttgagttcctgcctcaccttggagg
acagaactcagatgtagctggtgatgttagcagaaactgggcagacaggg
cagggaccaaaagaagcatgtgaggatataaggacccaaagaaggatgac
tgaagctcaggacacctcatggtgggcagactggacagactagctcatca
ccttccccatctctcaaaaagccccagacaggtagcttgagacccatgat
gctccgtgggacccctgccttgtctctcttaagcatccatctatgggtat
atagcacacgcccacctctctaaaactcatgctctttggtatatgagtta
tataagggttttattacttatgtgtccatgtatgagtgtatatatgggca
tgcagatacccaaggaggtcagaatttcatatgtaacttcatatcctctg
aagttacaggcagttgtgaaacaccttatgtggtgctgggaactgaaagg
tctcccacaagagcagcaagcccttgtaactgctgagccatctctccagc
tcctgagaatgtcattcttccagtcctggatacaaaaaccctaaaagcca
ccgattaggagcgactttggtggctgttgattttctggagactacgtcta
atcgaggttaaaagaagacctccattaggctcaaaggcaccccaaatttc
tgatatcacaacagccagtcaaaatggcctcagagtcacatctgtccact
catctttcctcagggtttaggttaaccacgcagacctctctgaacctgca
ggctggtggcaaccgctgagagcctctgtcacatagctggggtgtcaatc
ctcaaggtaagaaggtagccaacgctttccagcccctttcctgtcttcac
agacagtccagcatgcttcttcccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114164131_114165112
seq2: B6Ng01-230A24.b_42_1041

seq1  GAATTCCTCTGTGGAAAGTTTCAAGGTGGGGGAACTGTGGCAATGATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTGGAAAGTTTCAAGGTGGGGGAACTGTGGCAATGATTAG  50

seq1  GCCAGATGTTCTGGCTCTGGGGATCCTGGGCCCTCTTGAAAGATTGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATGTTCTGGCTCTGGGGATCCTGGGCCCTCTTGAAAGATTGGCAT  100

seq1  TAATGAACCAGTCCTTTCCCTGGAAAATGATCACCTCTTGGCTGTATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACCAGTCCTTTCCCTGGAAAATGATCACCTCTTGGCTGTATTAG  150

seq1  AGACAGCTGTTGTTATCTATGCTGGTCTAAAAAGAAATGATTAGACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTGTTGTTATCTATGCTGGTCTAAAAAGAAATGATTAGACAGAA  200

seq1  TCTGAATAATGATTTAGATTGATTACCCTCAGATAACCCTCAGTGGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAATGATTTAGATTGATTACCCTCAGATAACCCTCAGTGGAGAC  250

seq1  ACGAAAATAGTACAGAAAGCCGATGTGTTCAGAACGTCGTTAATTACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAATAGTACAGAAAGCCGATGTGTTCAGAACGTCGTTAATTACTTA  300

seq1  GATCTGGGACCTAGCGTGTCATTAGTATTCTATAAGTGGTGGGAGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGGACCTAGCGTGTCATTAGTATTCTATAAGTGGTGGGAGGAAAG  350

seq1  AGAGACCCCTTCTCCCACGCAGTCTCAGGCCTCCTCCCTGTTCACACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCCTTCTCCCACGCAGTCTCAGGCCTCCTCCCTGTTCACACTAG  400

seq1  AGGCTGGACCCCTTATGGTCAAAGTCTGAGCATCCATTGAAAACCTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGACCCCTTATGGTCAAAGTCTGAGCATCCATTGAAAACCTGGGC  450

seq1  AACCGCTCGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCTCGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGC  500

seq1  AGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAGAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAGAGTGAG  550

seq1  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACGGAA  600

seq1  AGAAAGAAAGAAAGAAAG-AAAGAAAGAAAGACAGAAAGAAAGAAAGACA  649
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGACAGAAAGAAAGAAAGACA  650

seq1  GACAGACAGACAGACAG-AAAGAAAGAAAGAAAGAAAGAAAGG-AAGGAA  697
      |||||||| || ||||| ||||||||||||||||| ||||||| ||||||
seq2  GACAGACATACTGACAGAAAAGAAAGAAAGAAAGATAGAAAGGAAAGGAA  700

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAACCAGGGCAACCAATACA  747
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAATGAAGGAAGGAAGGAAGAAAACCAGGGCAACCAATACA  750

seq1  ACCAACATCAAAG-AGGCAGAATGTCTCACATTGGCCTGTCTGCTCTTCT  796
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  ACCAACATCAAAGAAGGCAGATTGTCTCACATTGGCCTGTCTGCTCTTCT  800

seq1  GTGTA-AGGCT--CCATGTG-AGGCTGGGCCTGTTAG-AAAACTGGTATC  841
      ||||| |||||  | ||||| |||||||||||| ||| ||||||||||||
seq2  GTGTATAGGCTTCCAATGTGAAGGCTGGGCCTGATAGAAAAACTGGTATC  850

seq1  AAAATAAAA--CCTTGAAAGCAGAACTGCAGCCCC-TTCATAGGGAACGA  888
      |||||||||  | |||||||||||||||||||||| |||||||||||| |
seq2  AAAATAAAAACCTTTGAAAGCAGAACTGCAGCCCCTTTCATAGGGAACTA  900

seq1  GCCTTGAAACCCAATTGTC-TCTTCCAAGAAAAGCTGCCCGGGCACTTCC  937
      ||| |  |||||||||||| ||||||| |||||||||||| ||||  |||
seq2  GCCCTTGAACCCAATTGTCTTCTTCCATGAAAAGCTGCCCTGGCATCTCC  950

seq1  GT--GAAAAGTCGGTTCCCA-CCCCCCTGTGCC-AGG-AGACCCTGTTAC  982
      ||   ||||||||||||||| ||||| |||||| ||| | || |||||||
seq2  GTTGAAAAAGTCGGTTCCCATCCCCCTTGTGCCTAGGAAAACTCTGTTAC  1000

seq1: chr11_114325353_114326318
seq2: B6Ng01-230A24.g_70_1045 (reverse)

seq1  -GGGGGAG-AGCATGCT-GACTGTCTGTG-AGACAGGAA--GGGCTGGAA  44
       |||| || |||||||| ||||||||||| |||||||||  |||||||||
seq2  GGGGGAAGAAGCATGCTGGACTGTCTGTGAAGACAGGAAAGGGGCTGGAA  50

seq1  AGCGTTGGC-ACC-TCTTACCTTGAGGA-TGACACCCCAGCTATGTGACA  91
      ||||||||| ||| |||||||||||||| |||||||||||||||||||||
seq2  AGCGTTGGCTACCTTCTTACCTTGAGGATTGACACCCCAGCTATGTGACA  100

seq1  GAGGCTCTCAGCGGTTGCCACCAG-CTGCAGGTTCAGAGAGGTCTGCGTG  140
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGGCTCTCAGCGGTTGCCACCAGCCTGCAGGTTCAGAGAGGTCTGCGTG  150

seq1  GTTAACTTAAACCCTGAGGAAAGATGAGTGGACAGATGTGACTCTGAGGC  190
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCTAAACCCTGAGGAAAGATGAGTGGACAGATGTGACTCTGAGGC  200

seq1  CATTTTGACTGGCTGTTGTGATATCAGAAATTTGGGGTGCCTTTGAGCCT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGACTGGCTGTTGTGATATCAGAAATTTGGGGTGCCTTTGAGCCT  250

seq1  AATGGAGGTCTTCTTTTAACCTCGATTAGACGTAGTCTCCAGAAAATCAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGTCTTCTTTTAACCTCGATTAGACGTAGTCTCCAGAAAATCAA  300

seq1  CAGCCACCAAAGTCGCTCCTAATCGGTGGCTTTTAGGGTTTTTGTATCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCAAAGTCGCTCCTAATCGGTGGCTTTTAGGGTTTTTGTATCCA  350

seq1  GGACTGGAAGAATGACATTCTCAGGAGCTGGAGAGATGGCTCAGCAGTTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGAAGAATGACATTCTCAGGAGCTGGAGAGATGGCTCAGCAGTTA  400

seq1  CAAGGGCTTGCTGCTCTTGTGGGAGACCTTTCAGTTCCCAGCACCACATA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTTGCTGCTCTTGTGGGAGACCTTTCAGTTCCCAGCACCACATA  450

seq1  AGGTGTTTCACAACTGCCTGTAACTTCAGAGGATATGAAGTTACATATGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTCACAACTGCCTGTAACTTCAGAGGATATGAAGTTACATATGA  500

seq1  AATTCTGACCTCCTTGGGTATCTGCATGCCCATATATACACTCATACATG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGACCTCCTTGGGTATCTGCATGCCCATATATACACTCATACATG  550

seq1  GACACATAAGTAATAAAACCCTTATATAACTCATATACCAAAGAGCATGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATAAGTAATAAAACCCTTATATAACTCATATACCAAAGAGCATGA  600

seq1  GTTTTAGAGAGGTGGGCGTGTGCTATATACCCATAGATGGATGCTTAAGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAGAGGTGGGCGTGTGCTATATACCCATAGATGGATGCTTAAGA  650

seq1  GAGACAAGGCAGGGGTCCCACGGAGCATCATGGGTCTCAAGCTACCTGTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGGCAGGGGTCCCACGGAGCATCATGGGTCTCAAGCTACCTGTC  700

seq1  TGGGGCTTTTTGAGAGATGGGGAAGGTGATGAGCTAGTCTGTCCAGTCTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTTTTGAGAGATGGGGAAGGTGATGAGCTAGTCTGTCCAGTCTG  750

seq1  CCCACCATGAGGTGTCCTGAGCTTCAGTCATCCTTCTTTGGGTCCTTATA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATGAGGTGTCCTGAGCTTCAGTCATCCTTCTTTGGGTCCTTATA  800

seq1  TCCTCACATGCTTCTTTTGGTCCCTGCCCTGTCTGCCCAGTTTCTGCTAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACATGCTTCTTTTGGTCCCTGCCCTGTCTGCCCAGTTTCTGCTAA  850

seq1  CATCACCAGCTACATCTGAGTTCTGTCCTCCAAGGTGAGGCAGGAACTCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCAGCTACATCTGAGTTCTGTCCTCCAAGGTGAGGCAGGAACTCA  900

seq1  ACTAACCCTCTTGAGAATGTTCAGAGCATGCATGCGTTCAGACTCCTCCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCCTCTTGAGAATGTTCAGAGCATGCATGCGTTCAGACTCCTCCA  950

seq1  CTCCTGAGAAGCAGCGGGCTGAATTC  966
      ||||||||||||||||||||||||||
seq2  CTCCTGAGAAGCAGCGGGCTGAATTC  976