BAC Information

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BAC

Clone NameB6Ng01-230P13
Chromosome11 (Build37)9 (Build37)
Map Location 62,407,462 - 62,407,50737,026,040 - 37,026,514
singlet/doubletsingletsinglet
Overlap geneTrpv2
Upstream geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb
Downstream gene2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230P13.bB6Ng01-230P13.g
ACCGA043697GA043698
length128469
definitionB6Ng01-230P13.b B6Ng01-230P13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,407,462 - 62,407,507)(37,026,040 - 37,026,514)
sequence
gaattctgaggtgtgactgtgttaaaggagatgtattactggaggtgagc
tttgagggtttttgttttgttttgttttgttttgttttgttttgttttgt
tttcttttgttttggtttggtttggttt
agaagatcatttttgtaattactggcagtttgaacgagttgcattttaac
ctcttatcataagtactaactgtgttatttatgctctgaggcagaggtgg
gaggggaacggaaacgtgttcttcagttctcactgtggaggagatggaag
gtgggagggagaccagagctgacaagaaaatccaccttgactgctattga
gttccttgggagttgtaggtagaagttttgtctaattgttcagatttatg
gcacatgcttggtccaatccttaaggctctaccctgggcccacagacact
gaagtttacagtgagttggcctggccctctgtagcaagccataacctaat
cctggagacacttgagatacacactcggtcagagtcatgtcagtaataaa
tggagagcgacagtatttgtcgaagtattctggcctgaaagaacaaaggt
gtgtggggatgggagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62407462_62407507
seq2: B6Ng01-230P13.b_128_172 (reverse)

seq1  AAACCAAAAACCAAACCAAAACAAAAAACAACAACA-ACAACAAAAC  46
      |||||  ||||||||||||||||||| | ||||| | | ||||||||
seq2  AAACC--AAACCAAACCAAAACAAAAGAAAACAAAACAAAACAAAAC  45

seq1: chr9_37026040_37026514
seq2: B6Ng01-230P13.g_70_544

seq1  GAATTCAGAAGATCATTTTTGTAATTACTGGCAGTTTGAACGAGTTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGATCATTTTTGTAATTACTGGCAGTTTGAACGAGTTGCAT  50

seq1  TTTAACCTCTTATCATAAGTACTAACTGTGTTATTTATGCTCTGAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTCTTATCATAAGTACTAACTGTGTTATTTATGCTCTGAGGCAG  100

seq1  AGGTGGGAGGGGAACGGAAACGTGTTCTTCAGTTCTCACTGTGGAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAGGGGAACGGAAACGTGTTCTTCAGTTCTCACTGTGGAGGAGA  150

seq1  TGGAAGGTGGGAGGGAGACCAGAGCTGACAAGAAAATCCACCTTGACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTGGGAGGGAGACCAGAGCTGACAAGAAAATCCACCTTGACTGC  200

seq1  TATTGAGTTCCTTGGGAGTTGTAGGTAGAAGTTTTGTCTAATTGTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTTCCTTGGGAGTTGTAGGTAGAAGTTTTGTCTAATTGTTCAGA  250

seq1  TTTATGGCACATGCTTGGTCCAATCCTTAAGGCTCTACCCTGGGCCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGCACATGCTTGGTCCAATCCTTAAGGCTCTACCCTGGGCCCACA  300

seq1  GACACTGAAGTTTACAGTGAGTTGGCCTGGCCCTCTGTAGCAAGCCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAAGTTTACAGTGAGTTGGCCTGGCCCTCTGTAGCAAGCCATAA  350

seq1  CCTAATCCTGGAGACACTTGAGATACACACTCGGTCAGAGTCATGTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCTGGAGACACTTGAGATACACACTCGGTCAGAGTCATGTCAGT  400

seq1  AATAAATGGAGAGCGACAGTATTTGTCGAAGTATTCTGGCCTGAAAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGGAGAGCGACAGTATTTGTCGAAGTATTCTGGCCTGAAAGAAC  450

seq1  AAAGGTGTGTGGGGATGGGAGGGAT  475
      |||||||||||||||||||||||||
seq2  AAAGGTGTGTGGGGATGGGAGGGAT  475