BAC Information

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BAC

Clone NameB6Ng01-231B09
Chromosome11 (Build37)
Map Location 89,009,728 - 89,207,164
singlet/doubletdoublet
Overlap geneNog, LOC100039047
Upstream geneMrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114
Downstream gene4932411E22Rik, Ankfn1, Pctp, Tmem100, LOC100039104, Mmd, Hlf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231B09.bB6Ng01-231B09.g
ACCGA043781GA043782
length1,071891
definitionB6Ng01-231B09.b B6Ng01-231B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,009,728 - 89,010,784)(89,206,278 - 89,207,164)
sequence
gaattctcctctgttttacctctgttatcccattctcttcaaaaccatgt
ccaaaactgctacttcccacagaggagtctttctgctttttccaaccgag
gttttttttttttgtttttttgttttttttttgttttttttgtttttttt
tttttgagacagggtttctctgtgtagccctggctgtcctggaactcact
ttgtagaccaagctggccttgaactcagaaatctgcctgcctctgcctcc
cgagtgctgggattaaaggagtgtgccaccatgcccggcttgaggttttt
ttttttttaaagatttatttattatatctaggtacactgtagctgtcttc
agacaccctagaagaaggtattagatctcattacagatggttgcgagcta
ccatgtggttgctgggatttgaactcagggcctatggaagagcagtcagt
gctcttacccactgagccatcttgccatccccatccccaccgagttttga
ctgttttctttgtgccaaaaagctataactcggatcaccccacccccacc
ttctttcacgaataaaagaaccagtattaggcagggtctgggagacagaa
gactgtaaaagttatgagtatgctcttatggagctcagggtccaagacag
tgggtttcaaaccttggctacgcattctatgtagagtctgaagtctctct
ggaggatggtaagtgggggaagtcaggagcgattaacagggtggacggct
gcctctttccttattcccaacttctcggtctacaaggtgccttctgtggt
acctgttttacttgtaggttctcagcaaaaaaggcttccactgttacaac
atgccttgggaacaaattcatttgtataagatcaagtatttgcaaatcct
ttctctcttcttcttaaaactagaagtactaattataaacattccatata
attaatattatactactcagcataacacaatggctatgtaaattattgtt
ctataccggctgcttgaggataatggacaagaaataaaaatgtcttttat
tctcttcaaacataaatgtgt
gaattcttacaaacaacaatactggatgtgtaacaatactgattttgtaa
acacagatgacaaaaagagaatggaagacgacagccttgcctacttctaa
taaggtttttatgagctacaacaccataaggaaacagttcaaaaatttaa
atcactaaggacactattcgagagttgagcattgtggcgcatacctgtaa
tcacaggaacttaggaggtgaagaaataaagatcaggagttcaaggtctt
ccccggctacatagtgagttcaaggtcagcatgagtcacataaaactctt
gactcaagaagagaggaatgagaagtaatggggtgctgatgttcacctat
cgggtcaccaagcccattccttgcagacaacaaataattgaatgtccagg
aaagacagaagagcctcagagaaaattcttctctttccctaatggtccta
tttagataccccctccatccctgttgttcagcctctgagcaaggcaagag
cagagtctcaggaggcagcttcagtgagacagctcattttaagggggtga
gagggtgggggaacaaaggctaaacctttgggagtgagtgggggatgcca
gcattggccagggccagggcactggggatgccttatttgcataaagagga
actccagggttgctgggcatgaccttagaaagagaagaggaagtttaaac
ctaggtaccaaactatgtgtcctcctcctgtgagcaaaggtgtgagcacg
gggctataatgcaccaagacaggttgggaggggaacaatcctactccctg
cagagctcaggagtagctttatttgtgaggtactgcccagtactgggcca
cataagcaaactaccacatctaggtcatttgttggtttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_89009728_89010784
seq2: B6Ng01-231B09.b_42_1112

seq1  GAATTCTCCTCTGTTTTACCTCTGTTATCCCATTCTCTTCAAAACCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTGTTTTACCTCTGTTATCCCATTCTCTTCAAAACCATGT  50

seq1  CCAAAACTGCTACTTCCCACAGAGGAGTCTTTCTGCTTTTTCCAACCGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTGCTACTTCCCACAGAGGAGTCTTTCTGCTTTTTCCAACCGAG  100

seq1  GTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTGTTTTTTTTGTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTGTTTTTTTTGTTTTTTTT  150

seq1  TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  200

seq1  TTGTAGACCAAGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAAGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCC  250

seq1  CGAGTGCTGGGATTAAAGGAGTGTGCCACCATGCCCGGCTTGAGGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGGGATTAAAGGAGTGTGCCACCATGCCCGGCTTGAGGTTTTT  300

seq1  TTTTTTTTAAAGATTTATTTATTATATCTAGGTACACTGTAGCTGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAAGATTTATTTATTATATCTAGGTACACTGTAGCTGTCTTC  350

seq1  AGACACCCTAGAAGAAGGTATTAGATCTCATTACAGATGGTTGCGAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCTAGAAGAAGGTATTAGATCTCATTACAGATGGTTGCGAGCTA  400

seq1  CCATGTGGTTGCTGGGATTTGAACTCAGGGCCTATGGAAGAGCAGTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTTGCTGGGATTTGAACTCAGGGCCTATGGAAGAGCAGTCAGT  450

seq1  GCTCTTACCCACTGAGCCATCTTGCCATCCCCATCCCCACCGAGTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACCCACTGAGCCATCTTGCCATCCCCATCCCCACCGAGTTTTGA  500

seq1  CTGTTTTCTTTGTGCCAAATAGCTATAACTCGGATCACCCCACCCCCACC  550
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGTTTTCTTTGTGCCAAAAAGCTATAACTCGGATCACCCCACCCCCACC  550

seq1  TTCTTTCACGAATAAAAGAACCAGTATTAGGCAGGGTCTGGGAGACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCACGAATAAAAGAACCAGTATTAGGCAGGGTCTGGGAGACAGAA  600

seq1  GACTGTAAAAGTTATGAGTATGCTCTTATGGAGCTCAGGGTCCAAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAAAAGTTATGAGTATGCTCTTATGGAGCTCAGGGTCCAAGACAG  650

seq1  TGGGTTTCAAACCTTGGCTACGCATTCTATGTAGAGTCTGAAGTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCAAACCTTGGCTACGCATTCTATGTAGAGTCTGAAGTCTCTCT  700

seq1  GGAGGATGGTAAGT-GGGGAAGTCAGGAGCGATTAACAGGGTGGACGGCT  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAGGATGGTAAGTGGGGGAAGTCAGGAGCGATTAACAGGGTGGACGGCT  750

seq1  GCCTCTTTCCTTATTCCCAACTTCTCGGTCTACAAGGTG-CTTCTGTGGT  798
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  GCCTCTTTCCTTATTCCCAACTTCTCGGTCTACAAGGTGCCTTCTGTGG-  799

seq1  TACCTGTTTTACTTGTAGG-TCTCAGC-AGAAAGGCTTCCACTGTTACAA  846
      ||||||||||||||||||| ||||||| | ||||||||||||||||||||
seq2  TACCTGTTTTACTTGTAGGTTCTCAGCAAAAAAGGCTTCCACTGTTACAA  849

seq1  CATGCC-TGGGAAC-AATTCATTTGTATAAGATCAAGTATTTGCAAATTC  894
      |||||| ||||||| ||||||||||||||||||||||||||||||||| |
seq2  CATGCCTTGGGAACAAATTCATTTGTATAAGATCAAGTATTTGCAAATCC  899

seq1  TTTCTCTCT--CTCTAAAACATAGAAGTACATATTAT-AACA-TCCATAT  940
      |||||||||   ||| |||  |||||||||  ||||| |||| |||||||
seq2  TTTCTCTCTTCTTCTTAAAACTAGAAGTACTAATTATAAACATTCCATAT  949

seq1  AATTAATATTATACTACTCAGCATAACACAAGTGCTATGTAAATTATTGT  990
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AATTAATATTATACTACTCAGCATAACACAATGGCTATGTAAATTATTGT  999

seq1  TCTATA-CTGCTGCTTGAGGAATAAT-GACAAGAAAT-AAAAGGTCTAT-  1036
      |||||| | ||||||||||| ||||| |||||||||| |||| |||| | 
seq2  TCTATACCGGCTGCTTGAGG-ATAATGGACAAGAAATAAAAATGTCTTTT  1048

seq1  -ATCCCTTC-AACATAAATGTGT  1057
        || |||| |||||||||||||
seq2  ATTCTCTTCAAACATAAATGTGT  1071

seq1: chr11_89206278_89207164
seq2: B6Ng01-231B09.g_71_961 (reverse)

seq1  AACAAACAAACAAATGACCTAGATGTGGTAGTTTGCTTATGTGACCCCAG  50
      ||||||| |||||||||||||||||||||||||||||||||||  |||||
seq2  AACAAACCAACAAATGACCTAGATGTGGTAGTTTGCTTATGTG-GCCCAG  49

seq1  TACTGGGCAGTACCTCACAAAT-AAGCTACTCCTGAGCTCTGCA-GGAGT  98
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  TACTGGGCAGTACCTCACAAATAAAGCTACTCCTGAGCTCTGCAGGGAGT  99

seq1  AGGATTGTTCCCCTCCC-ACCTGTCTTGGTGCATTATAGCCCCGTGCTCA  147
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGATTGTTCCCCTCCCAACCTGTCTTGGTGCATTATAGCCCCGTGCTCA  149

seq1  CACCTTTGCTCACAGGAGGAGGACACATAGTTTGGTACCTAGG-TTAAAC  196
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACCTTTGCTCACAGGAGGAGGACACATAGTTTGGTACCTAGGTTTAAAC  199

seq1  TTCCTCTTCTC-TTCTAAGGTCATGCCCAGCAACCCTGGAGTTCCTCTTT  245
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCTCTTTCTAAGGTCATGCCCAGCAACCCTGGAGTTCCTCTTT  249

seq1  ATGCAAATAAGGCATCCCCAGTGCCCTGGCCCTGGCCAATGCTGGCATCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATAAGGCATCCCCAGTGCCCTGGCCCTGGCCAATGCTGGCATCC  299

seq1  CCCACTCACTCCCAAAGGTTTAGCCTTTGTTCCCCCACCCTCTCACCCCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCACTCCCAAAGGTTTAGCCTTTGTTCCCCCACCCTCTCACCCCC  349

seq1  TTAAAATGAGCTGTCTCACTGAAGCTGCCTCCTGAGACTCTGCTCTTGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGAGCTGTCTCACTGAAGCTGCCTCCTGAGACTCTGCTCTTGCC  399

seq1  TTGCTCAGAGGCTGAACAACAGGGATGGAGGGGGTATCTAAATAGGACCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGAGGCTGAACAACAGGGATGGAGGGGGTATCTAAATAGGACCA  449

seq1  TTAGGGAAAGAGAAGAATTTTCTCTGAGGCTCTTCTGTCTTTCCTGGACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAAGAGAAGAATTTTCTCTGAGGCTCTTCTGTCTTTCCTGGACA  499

seq1  TTCAATTATTTGTTGTCTGCAAGGAATGGGCTTGGTGACCCGATAGGTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTATTTGTTGTCTGCAAGGAATGGGCTTGGTGACCCGATAGGTGA  549

seq1  ACATCAGCACCCCATTACTTCTCATTCCTCTCTTCTTGAGTCAAGAGTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCACCCCATTACTTCTCATTCCTCTCTTCTTGAGTCAAGAGTTT  599

seq1  TATGTGACTCATGCTGACCTTGAACTCACTATGTAGCCGGGGAAGACCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACTCATGCTGACCTTGAACTCACTATGTAGCCGGGGAAGACCTT  649

seq1  GAACTCCTGATCTTTATTTCTTCACCTCCTAAGTTCCTGTGATTACAGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTGATCTTTATTTCTTCACCTCCTAAGTTCCTGTGATTACAGGT  699

seq1  ATGCGCCACAATGCTCAACTCTCGAATAGTGTCCTTAGTGATTTAAATTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCACAATGCTCAACTCTCGAATAGTGTCCTTAGTGATTTAAATTT  749

seq1  TTGAACTGTTTCCTTATGGTGTTGTAGCTCATAAAAACCTTATTAGAAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGTTTCCTTATGGTGTTGTAGCTCATAAAAACCTTATTAGAAGT  799

seq1  AGGCAAGGCTGTCGTCTTCCATTCTCTTTTTGTCATCTGTGTTTACAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGCTGTCGTCTTCCATTCTCTTTTTGTCATCTGTGTTTACAAAA  849

seq1  TCAGTATTGTTACACATCCAGTATTGTTGTTTGTAAGAATTC  887
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTGTTACACATCCAGTATTGTTGTTTGTAAGAATTC  891