BAC Information

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BAC

Clone NameB6Ng01-231E08
Chromosome2 (Build37)11 (Build37)
Map Location 170,275,825 - 170,276,999114,391,301 - 114,391,432
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1
Downstream geneLOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231E08.bB6Ng01-231E08.g
ACCGA043917GA043918
length1,184400
definitionB6Ng01-231E08.b B6Ng01-231E08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(170,275,825 - 170,276,999)(114,391,301 - 114,391,432)
sequence
gaattctcctttgagttcaggccaagtatagctaactattgtcctgcctt
tcataacgacagtaacaagacacaggcttgctgtcacagacgctgtcaac
catttaacacagcatttaacgctcagaaacttaaactactgggatgtttc
ttgtaatcttaagcgtgaagtccgggtccaggaatctcctaggagatgag
gctggtgcagggtgccgacctcttagaaccagggcaatagcctgaacgtt
cccttagactggttctatcacattatctgataagtacagcgactgtttat
tcgaggctcacaactataaggggtttgttgttcattaacttcagtcccgg
tcctgaccaccgaaaaatgtggtcccgctgcgccacctgctgacaatgtc
agaaagtacatgtggtgtctggatcctgtttaagaatggctgaggcaaat
atatacccaagcaaacacagggccctgttggacactgccaggttgttcac
ttgtgttccctgaggatattaatggataggttgtgtttttaaaataagct
ctttgggccagtgatgtggatcagtgagtggctaaaggcgcttgcctcca
aacctgagtatgatcccaaccccctatgaattgacctctgagagcacaca
cacatacgcactgaataaatgaataaataaacaagcaaaccagcttcctg
gtcctcaccagaggtgcctggcctgttgcagtcagtgagtacttaacacc
tgcaatgcaccagggacctttgacacatgaacgccactgctccctgcttc
caatgggggaatgtaggcacagagatttcaagtaacttgtcacaagtcac
acagccaaaagtgtcaagggacaagatcccaaccaagtaaccttggccag
agatcctgctctaaaccttctgtgccgttcgacctcccaaaaaagcaaaa
gtagctataaaaaggtacctactaagtaactttttacttaactcaccctt
ccagggagggtagttctaaaaggtacaaggcttttctgtcccatcttctt
tgcaaagctcaatactatactgttcacttatgccttagaattcaaggcag
caagttatgggcctgcaatgagttagtgaattcaggcagttgacattttt
cttcccattcaaggaacaaacagtcatgactcat
cagcatcagtacagtacatgattcccagctccaaatcattggcagggagc
tgctgaggggtggagaagccctcactgttttcccatgctccagtggacag
ctacacaccgtatacacacatgggttgtactaactaaatttggagggtca
ttaaaagaaatgcatgaagttgggaaggggcagtttgaggagagatggag
ggaactagaagaggtatataggatcacattctctctttccttccttcctt
ccttccttccttccttccttccttccttccttccttcctttccttctttc
tttctttctttctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttcaaagatttatttattattgtatgtaagtacac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_170275825_170276999
seq2: B6Ng01-231E08.b_44_1227 (reverse)

seq1  ATGAGGTCATGGCCTGTTTGTTCCTTGATGTGGAAGAAAATGTTCACTTC  50
      |||| ||||| | |||||||||||||||   |||||||||   |||  | 
seq2  ATGA-GTCAT-GACTGTTTGTTCCTTGAATGGGAAGAAAAATGTCAACTG  48

seq1  CCTGAATTCACT-ACTCA-TGCAGGCCAAT-ACTTGCTGCC-TGATTTCT  96
      |||||||||||| ||||| |||||||| || |||||||||| ||| ||||
seq2  CCTGAATTCACTAACTCATTGCAGGCCCATAACTTGCTGCCTTGAATTCT  98

seq1  AA-GCAT-AGTGAAACAGTATAGTATGGAGCTTTGCAAAG-AGATGGGAC  143
      || |||| |||| ||||||||||||| ||||||||||||| |||||||||
seq2  AAGGCATAAGTG-AACAGTATAGTATTGAGCTTTGCAAAGAAGATGGGAC  147

seq1  AGAAAAG-CTTGTACCTTTTAGAACTACCCTCCCTGGAAGGTTGAGTTAA  192
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAAAAGCCTTGTACCTTTTAGAACTACCCTCCCTGGAAGGGTGAGTTAA  197

seq1  GTAAAAAGTTACTTAGTAGGTACC-TTTTATAGCTACTTTTGCTTTTTTG  241
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAAAAAGTTACTTAGTAGGTACCTTTTTATAGCTACTTTTGCTTTTTTG  247

seq1  GGAGGTCGAACGGCACAG-AGGTTTAGAGCAGGATCTCTGGCCAAGGTTA  290
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAGGTCGAACGGCACAGAAGGTTTAGAGCAGGATCTCTGGCCAAGGTTA  297

seq1  CTTGGTTGGGATCTTGT-CCTTGACACTTTTGGCTGTGTGACTTGTGACA  339
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTGGTTGGGATCTTGTCCCTTGACACTTTTGGCTGTGTGACTTGTGACA  347

seq1  AGTTACTTGAAATCTCTGTGCCTACATT-CCCCATTGGAAGCAGGGAGCA  388
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTTACTTGAAATCTCTGTGCCTACATTCCCCCATTGGAAGCAGGGAGCA  397

seq1  GTGGCGTTCATGTGTCAAAGGTCCCTGGTGCATTGCAGGTGTTAAGTACT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGTTCATGTGTCAAAGGTCCCTGGTGCATTGCAGGTGTTAAGTACT  447

seq1  CACTGACTGCAACAGGCCAGGCACCTCTGGTGAGGACCAGGAAGCTGGTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTGCAACAGGCCAGGCACCTCTGGTGAGGACCAGGAAGCTGGTT  497

seq1  TGCTTGTTTATTTATTCATTTATTCAGTGCGTATGTGTGTGTGCTCTCAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTTATTTATTCATTTATTCAGTGCGTATGTGTGTGTGCTCTCAG  547

seq1  AGGTCAATTCATAGGGGGTTGGGATCATACTCAGGTTTGGAGGCAAGCGC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAATTCATAGGGGGTTGGGATCATACTCAGGTTTGGAGGCAAGCGC  597

seq1  CTTTAGCCACTCACTGATCCACATCACTGGCCCAAAGAGCTTATTTTAAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCCACTCACTGATCCACATCACTGGCCCAAAGAGCTTATTTTAAA  647

seq1  AACACAACCTATCCATTAATATCCTCAGGGAACACAAGTGAACAACCTGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACCTATCCATTAATATCCTCAGGGAACACAAGTGAACAACCTGG  697

seq1  CAGTGTCCAACAGGGCCCTGTGTTTGCTTGGGTATATATTTGCCTCAGCC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCAACAGGGCCCTGTGTTTGCTTGGGTATATATTTGCCTCAGCC  747

seq1  ATTCTTAAACAGGATCCAGACACCACATGTACTTTCTGACATTGTCAGCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAACAGGATCCAGACACCACATGTACTTTCTGACATTGTCAGCA  797

seq1  GGTGGCGCAGCGGGACCACATTTTTCGGTGGTCAGGACCGGGACTGAAGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGCAGCGGGACCACATTTTTCGGTGGTCAGGACCGGGACTGAAGT  847

seq1  TAATGAACAACAAACCCCTTATAGTTGTGAGCCTCGAATAAACAGTCGCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACAACAAACCCCTTATAGTTGTGAGCCTCGAATAAACAGTCGCT  897

seq1  GTACTTATCAGATAATGTGATAGAACCAGTCTAAGGGAACGTTCAGGCTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATCAGATAATGTGATAGAACCAGTCTAAGGGAACGTTCAGGCTA  947

seq1  TTGCCCTGGTTCTAAGAGGTCGGCACCCTGCACCAGCCTCATCTCCTAGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGGTTCTAAGAGGTCGGCACCCTGCACCAGCCTCATCTCCTAGG  997

seq1  AGATTCCTGGACCCGGACTTCACGCTTAAGATTACAAGAAACATCCCAGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTGGACCCGGACTTCACGCTTAAGATTACAAGAAACATCCCAGT  1047

seq1  AGTTTAAGTTTCTGAGCGTTAAATGCTGTGTTAAATGGTTGACAGCGTCT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGTTTCTGAGCGTTAAATGCTGTGTTAAATGGTTGACAGCGTCT  1097

seq1  GTGACAGCAAGCCTGTGTCTTGTTACTGTCGTTATGAAAGGCAGGACAAT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGCAAGCCTGTGTCTTGTTACTGTCGTTATGAAAGGCAGGACAAT  1147

seq1  AGTTAGCTATACTTGGCCTGAACTCAAAGGAGAATTC  1175
      |||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCTATACTTGGCCTGAACTCAAAGGAGAATTC  1184

seq1: chr11_114391301_114391432
seq2: B6Ng01-231E08.g_305_436 (reverse)

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  50

seq1  AAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  100
      |||||||||||||||||||| | | |||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAGGAAAGGAAGGAAGGAAGGAAGGAAGGA  100

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGA  132
      ||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGA  132