BAC Information

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BAC

Clone NameB6Ng01-231L08
Chromosome11 (Build37)
Map Location 70,525,149 - 70,673,898
singlet/doubletdoublet
Overlap geneKif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1
Upstream geneLOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396
Downstream geneLOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231L08.bB6Ng01-231L08.g
ACCGA044235GA044236
length1,1841,062
definitionB6Ng01-231L08.b B6Ng01-231L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,525,149 - 70,526,364)(70,672,835 - 70,673,898)
sequence
gaattccctacatcagttaataatcaagattgtccctcacagacatgtca
gcaggccagtctgctctgaataaccctaattcagattctcttcataggat
tctaggttgtgttacatgatagcaaccagtgtacctgggttaggggatgg
gactcaagtggccagacttgggtggcaagcaactaatttacctactgagt
catcttgctggtcctagcttcagtcttttagcaatagtgtttgcatacct
ctccatttcaaacattatcttgcttttttttttcatggagccagaatatt
gtgttggatgagggcagtttatttttagtaagctttctactgatgggcat
ttaatttttttttttttatattctctgatagtgtgagtactgggtggtac
aatcaataatcttataaatagatgcgaaaaattaggcatggtagtacatg
cccataatctcagcaatcagaaggccaacgcaggagaattgtcagaagtt
tcagatcagctagggccacacagacctcacccctcaccccaaaaaaagat
tgttatctgtaagagtaattttttttttttttggtttttcgagacagggt
ttctctgtatagccctggctgtcctggaactcactctgtagaccaggctg
gcctcgaactcagaaatccgcctgcctctgcctcctgagtgctgggatta
aaggcgtgcgccaccgtgtccagctaagagtaaactcttagaagtagata
tttagagtaaaacaatagccttttattaattaattttttttttcaacacc
aagtttctctatgtagccctggctgtcttagaactcactatgtagaccag
gttggtcttgaacttagagatctgccttcttctgcctttcaagtgcttgg
aattaaggtgccccgcttgatttatttttcaagtaaggttgccttggcta
gcctgaacttcttatacagaccaggctggctttgaattcacagaaatcca
ctgcctctctcctcctgggtactaggataaaatggtatcaatgtctagct
cttaatttgtattcttggagtgcagggactgaaccatgacgggtggtggt
ggtgtacaatgtgtatgcaggtcctaagtgaagcgacttgcgcttgcagt
cgtttccacggtaatattgagacagggccctctg
gaattccaggccagtcaagaatacccagagaaatcctgtctcaaaattaa
aggaaagaaatgtaacaacttaatggaataaatggttaaaagatctggct
ggactccgcaaagatgcccagacagcaagtcaacttgtgaaaaaggtgtt
taatattacatgtcattaaggaactgctatttttactattatgaacatga
tacagtagattaacaaaattgggagaatttcgcctttactaaaagagtta
cagatcctgctcaaaaaggacattttggtgtgcaatgcatatcacatgtc
atgtccacagcattttattcaattacagtacattactgtataatgagcac
cagcaaactctccagtactgaagcatctgcttagcctgacagaggaaacc
atgcaaaacagggagggtcagttcaccctcacagaagagaaccccaacat
gacagaaagctccttgatacctgaaaatgttttgcccaaaaagaaaatac
tccagctccaattggggttgtttgtttgtttgtctgtttgtttgttttaa
agatttatttattgtatgtcagtctcttcagacacaccagaaaagggcat
cagatcccattacagatggctgtgagtcaccatgtggttgctgggaattg
aactcaagacctctggaagagcagtcagtgctcttaactgctgaaccatc
tctccaggcctagttccaattgtttaagggaaagaagagaaataatttgg
gttcaaaatcaaaaatccacttaattctctaccaacctttcacatttatg
tccatgggaaacttaaaattctaatgcctgttgtatcagtgtaaatggac
tggcttctctcctacataactaaattatcttggaacaactcagtgggtgg
gggaaaatcaagtgcttccttcttggtttaagataacccagaagaacaaa
aaaaagaaccaaaataattgactataattgaggtctcaaactgtacctga
gtagaggttagctggcctatttattccacagaaattcaatccatatgtag
cttgaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70525149_70526364
seq2: B6Ng01-231L08.b_45_1228

seq1  GAATTCCCTACATCAGTTAATAATCAAGATTGTCCCTCACAGACATGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTACATCAGTTAATAATCAAGATTGTCCCTCACAGACATGTCA  50

seq1  GCAGGCCAGTCTGCTCTGAATAACCCTAATTCAGATTCTCTTCATAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCAGTCTGCTCTGAATAACCCTAATTCAGATTCTCTTCATAGGAT  100

seq1  TCTAGGTTGTGTTACATGATAGCAACCAGTGTACCTGGGTTAGGGGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTTGTGTTACATGATAGCAACCAGTGTACCTGGGTTAGGGGATGG  150

seq1  GACTCAAGTGGCCAGACTTGGGTGGCAAGCAACTAATTTACCTACTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGTGGCCAGACTTGGGTGGCAAGCAACTAATTTACCTACTGAGT  200

seq1  CATCTTGCTGGTCCTAGCTTCAGTCTTTTAGCAATAGTGTTTGCATACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGCTGGTCCTAGCTTCAGTCTTTTAGCAATAGTGTTTGCATACCT  250

seq1  CTCCATTTCAAACATTATCTTGCTTTTTTTTTTCATGGAGCCAGAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTCAAACATTATCTTGCTTTTTTTTTTCATGGAGCCAGAATATT  300

seq1  GTGTTGGATGAGGGCAGTTTATTTTTAGTAAGCTTTCTACTGATGGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGATGAGGGCAGTTTATTTTTAGTAAGCTTTCTACTGATGGGCAT  350

seq1  TTAATTTTTTTTTTTTTATATTCTCTGATAGTGTGAGTACTGGGTGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTTTTTTTTATATTCTCTGATAGTGTGAGTACTGGGTGGTAC  400

seq1  AATCAATAATCTTATAAATAGATGCGAAAAATTAGGCATGGTAGTACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATAATCTTATAAATAGATGCGAAAAATTAGGCATGGTAGTACATG  450

seq1  CCCATAATCTCAGCAATCAGAAGGCCAACGCAGGAGAATTGTCAGAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAATCTCAGCAATCAGAAGGCCAACGCAGGAGAATTGTCAGAAGTT  500

seq1  TCAGATCAGCTAGGGCCACACAGACCTCACCCCTCACCCCAAAAAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCAGCTAGGGCCACACAGACCTCACCCCTCACCCCAAAAAAAGAT  550

seq1  TGTTATCTGTAAGAGTAATTTTTTTTTTTTTTGGTTTTTCGAGACAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTGTAAGAGTAATTTTTTTTTTTTTTGGTTTTTCGAGACAGGGT  600

seq1  TTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTG  650

seq1  GCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTA  700

seq1  AAGGCGTGCGCCACCGTGTCCAGCTAAGAGTAAACTCTTAGAAGTAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGCGCCACCGTGTCCAGCTAAGAGTAAACTCTTAGAAGTAGATA  750

seq1  TTTAGAGTAAAACAATAGCCTTTTATTAATTAA-TTTTTTTTTCAACACC  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTAGAGTAAAACAATAGCCTTTTATTAATTAATTTTTTTTTTCAACACC  800

seq1  AAGTTTCTCTATGTAGCCCTGGCTGTCTTAGAACTCACTATGTAGACCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTCTATGTAGCCCTGGCTGTCTTAGAACTCACTATGTAGACCAG  850

seq1  GTTGGTCTTGAACTTAGAGATCTGCCTTCTTCTGCCTTCCAAGTGCTTGG  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTGGTCTTGAACTTAGAGATCTGCCTTCTTCTGCCTTTCAAGTGCTTGG  900

seq1  AATTAAGGTGCCCCGCTTGATTTTATTTTTTCAAGTAAGGTTGCCTTGGC  949
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  AATTAAGGTGCCCCGCTTGATTT--ATTTTTCAAGTAAGGTTGCCTTGGC  948

seq1  TAGCCTGAAACTTCTTATACAGACCAGGCTGGCTTTGAATTCACAGAAAT  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTG-AACTTCTTATACAGACCAGGCTGGCTTTGAATTCACAGAAAT  997

seq1  CCACTTGCCTCTCT-CTCCTGGGTACTAGGATTAAAAATGGGTATCAGTG  1048
      |||| ||||||||| |||||||||||||||||  ||||| ||||||| ||
seq2  CCAC-TGCCTCTCTCCTCCTGGGTACTAGGAT--AAAAT-GGTATCAATG  1043

seq1  TCCTAGCTCTTTATTTTTGTTTATTCTTGTGAAGTGCCAGGGACTGAACC  1098
      | ||||||||| |||    | ||||||  || |||| ||||||||||| |
seq2  T-CTAGCTCTTAATT----TGTATTCT--TGGAGTG-CAGGGACTGAA-C  1084

seq1  CATGACGGTGTGTGTGTGTGTGTTTACACATTTGTGTATGCAGGTCCTCA  1148
      |||||||| ||| ||| ||| || ||||    |||||||||||||||| |
seq2  CATGACGG-GTG-GTG-GTG-GTGTACA---ATGTGTATGCAGGTCCT-A  1126

seq1  GGTGGAGGCCAGACATTGCCGTCTTTCTCACTCTCTTCTCCACCTTATTT  1198
       ||| ||    ||| ||||       ||  |  || | |||||  ||  |
seq2  AGTGAAG---CGAC-TTGC------GCTTGCAGTCGTTTCCACGGTA-AT  1165

seq1  TTTGAGACAGGG-CCTCTG  1216
       ||||||||||| ||||||
seq2  ATTGAGACAGGGCCCTCTG  1184

seq1: chr11_70672835_70673898
seq2: B6Ng01-231L08.g_64_1125 (reverse)

seq1  TTTTTTTTC-AGCTACATAT-GATTGGATTTCTGT-GAATAAATAGACCA  47
      ||||||||| |||||||||| ||||| |||||||| |||||||||| |||
seq2  TTTTTTTTCAAGCTACATATGGATTGAATTTCTGTGGAATAAATAGGCCA  50

seq1  GCT-ACCTCTACTCAGGTTACAGTTCTGAGACCTCAATTATAGTCAATTA  96
      ||| ||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  GCTAACCTCTACTCAGG-TACAGTT-TGAGACCTCAATTATAGTCAATTA  98

seq1  TTTTTGTTCTTTTTTTGGTTCTTCTGGGTTATCTTAACCAAAGAAGGAAG  146
      |||| ||||||||||| |||||||||||||||||||| | ||||||||||
seq2  TTTTGGTTCTTTTTTTTGTTCTTCTGGGTTATCTTAAACCAAGAAGGAAG  148

seq1  CACTTTGATTTTCCCCCACCCCACCTGAGTTGTTCCAAAGATAATTTAGT  196
      ||| |||||||||||||||||   |||||||||||| |||||||||||||
seq2  CAC-TTGATTTTCCCCCACCC--ACTGAGTTGTTCC-AAGATAATTTAGT  194

seq1  TATGTAGGAGAGAAGCCAGTCCATTTACACTGATACAACAGGCATTAGAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGAGAGAAGCCAGTCCATTTACACTGATACAACAGGCATTAGAA  244

seq1  TTTTAAGTTTCCCATGGACATAAATGTGAAAGGTTGGTAGAGAATTAAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTTCCCATGGACATAAATGTGAAAGGTTGGTAGAGAATTAAGT  294

seq1  GGATTTTTGATTTTGAACCCAAATTATTTCTCTTCTTTCCCTTAAACAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTGATTTTGAACCCAAATTATTTCTCTTCTTTCCCTTAAACAAT  344

seq1  TGGAACTAGGCCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTAGGCCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTC  394

seq1  TTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATGGTGACTCACAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATGGTGACTCACAGC  444

seq1  CATCTGTAATGGGATCTGATGCCCTTTTCTGGTGTGTCTGAAGAGACTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTAATGGGATCTGATGCCCTTTTCTGGTGTGTCTGAAGAGACTGA  494

seq1  CATACAATAAATAAATCTTTAAAACAAACAAACAGACAAACAAACAAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATAAATAAATCTTTAAAACAAACAAACAGACAAACAAACAAACA  544

seq1  ACCCCAATTGGAGCTGGAGTATTTTCTTTTTGGGCAAAACATTTTCAGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAATTGGAGCTGGAGTATTTTCTTTTTGGGCAAAACATTTTCAGGT  594

seq1  ATCAAGGAGCTTTCTGTCATGTTGGGGTTCTCTTCTGTGAGGGTGAACTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAGCTTTCTGTCATGTTGGGGTTCTCTTCTGTGAGGGTGAACTG  644

seq1  ACCCTCCCTGTTTTGCATGGTTTCCTCTGTCAGGCTAAGCAGATGCTTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCTGTTTTGCATGGTTTCCTCTGTCAGGCTAAGCAGATGCTTCA  694

seq1  GTACTGGAGAGTTTGCTGGTGCTCATTATACAGTAATGTACTGTAATTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGAGAGTTTGCTGGTGCTCATTATACAGTAATGTACTGTAATTGA  744

seq1  ATAAAATGCTGTGGACATGACATGTGATATGCATTGCACACCAAAATGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGCTGTGGACATGACATGTGATATGCATTGCACACCAAAATGTC  794

seq1  CTTTTTGAGCAGGATCTGTAACTCTTTTAGTAAAGGCGAAATTCTCCCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGAGCAGGATCTGTAACTCTTTTAGTAAAGGCGAAATTCTCCCAA  844

seq1  TTTTGTTAATCTACTGTATCATGTTCATAATAGTAAAAATAGCAGTTCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAATCTACTGTATCATGTTCATAATAGTAAAAATAGCAGTTCCT  894

seq1  TAATGACATGTAATATTAAACACCTTTTTCACAAGTTGACTTGCTGTCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACATGTAATATTAAACACCTTTTTCACAAGTTGACTTGCTGTCTG  944

seq1  GGCATCTTTGCGGAGTCCAGCCAGATCTTTTAACCATTTATTCCATTAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTTTGCGGAGTCCAGCCAGATCTTTTAACCATTTATTCCATTAAG  994

seq1  TTGTTACATTTCTTTCCTTTAATTTTGAGACAGGATTTCTCTGGGTATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACATTTCTTTCCTTTAATTTTGAGACAGGATTTCTCTGGGTATTC  1044

seq1  TTGACTGGCCTGGAATTC  1064
      ||||||||||||||||||
seq2  TTGACTGGCCTGGAATTC  1062