BAC Information

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BAC

Clone NameB6Ng01-232N23
Chromosome11 (Build37)
Map Location 61,482,068 - 61,612,064
singlet/doubletdoublet
Overlap geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2
Upstream geneLOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2
Downstream geneAkap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232N23.bB6Ng01-232N23.g
ACCGA045098GA045099
length9521,127
definitionB6Ng01-232N23.b B6Ng01-232N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,482,068 - 61,483,014)(61,610,953 - 61,612,064)
sequence
gaattctttccgactggaaggccgagtgagatgcttgcttacgcagtcca
ggctagcctcaaagtggattctggggttacaaaccctgctggggctacag
gtgtgagctgacgctctctccagactttagactgggctgggcagggagcg
tcctcagattcatcctaaatctccactctgaaccatgggaagcagcccgg
ccctggggctggggagagactgagctgtggagggcctccaggtggggcta
cagaactcaggacggggttggtctctctggagggcgcagccctgggagca
ggcctcatttggcatatctgggacatattgtcccaaagggagtgacaact
gccattgtcactgtcagtaatcaattggaaagctcccctgagcatttttg
acgagaggcagccccacccagccttcctgtggatttctgaacaggttgca
tctggactcgggcctcagtttccctactgtgcattaggccaggaggcagc
acctgtcaccctgtgacagaaaggggatcccagaacttgtagctgctgcc
attctgcacacgcatgctggcaggctgtcctggtgtgcaacaggttgtca
gtgaggcccaggtaggtccctaacaggatggtctggattacaggggctgg
gacttggtacagtttggtggcattggttggaaaggttgagcaaagaaggg
aaaaggaagggaccatggtgacagagaggccagcaaagacaagaagccag
atcttgaatctgaagagctgggtttttcatgaaggcaatggcagccgtgg
aagtctcctgaggacatggaaatgttcggaatatctgagtgtctctcata
ggtacagagtttgatggggagtcaggatggtcttggggctcagcccccag
agtactgtgaaggactgaaggcgggagggtgatggggaggcaggggaaga
gg
gaattcctatgtattagatgtacctaaatttttcaatctattatagcctt
cttgttttctctgatgttttgttgaattttgtttgtttgagacagggtct
ctctacatagccctggatgttcctctaactcgctatgtagaggaggctgg
ccagaactcacagacatccacttgcctttacctcctgaatgtactaggat
taaaggtgtgtgccactgtgcccagttctctattgtctttattgcatcct
aaaacatatctgggccagcaaattgcctgactggatttgttttctaatca
gaaaggaacaacaactagcaaccatgggatttgatgtcccttcatcctgt
tcttgctataaggtctgtgcagtgcagtgggtgccggtgttatactgtgt
tatactcgtttcccttcccctttaacctagggctgcctttggcattagag
cacatcctgtgcacatgcataaaattgtaattagtttttttgagacagaa
tatcaccatgcaaccctgcctggcctgaaacttactagataggccaggct
ggcctcaaacttgtggttattttcctgcctctgcctccaaagttctggga
ttgcatgtgtgccaccacacccaacccttgatccttctttactgctttct
tgtgtactagtcacattttgatattttctttcaaagacaaggcttctcta
tgtagctctgatcttcttggaactcactctgtagaccaggtttgggctca
aactcagagatctacctgcccattatcaaccagctattttctcttttttt
ttcttttaacttagtttagtttttaataaatgtcttagggcttatcatat
attcattacaatcaagtttcaaatttacattaacttaaattttagtaaag
gatataaaaaatacccctcttaagtatcaattttcatttcatttctaagt
actatcattgttactctagatatggatgtgatgtattcttttaggatttt
tttaatgtacaggactgtttttcttgcatgtaatatatatgtgctgtcac
tttgcctggtgccctaccgaagactagaatagtatgctagaaccttctgg
aatggacttgcaggtggcctagttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61482068_61483014
seq2: B6Ng01-232N23.b_48_999

seq1  GAATTCTTTCCGACTGGAAGGCCGAGTGAGATGCTTGCTTACGCAGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCGACTGGAAGGCCGAGTGAGATGCTTGCTTACGCAGTCCA  50

seq1  GGCTAGCCTCAAAGTGGATTCTGGGGTTACAAACCCTGCTGGGGCTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCTCAAAGTGGATTCTGGGGTTACAAACCCTGCTGGGGCTACAG  100

seq1  GTGTGAGCTGACGCTCTCTCCAGACTTTAGACTGGGCTGGGCAGGGAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGCTGACGCTCTCTCCAGACTTTAGACTGGGCTGGGCAGGGAGCG  150

seq1  TCCTCAGATTCATCCTAAATCTCCACTCTGAACCATGGGAAGCAGCCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGATTCATCCTAAATCTCCACTCTGAACCATGGGAAGCAGCCCGG  200

seq1  CCCTGGGGCTGGGGAGAGACTGAGCTGTGGAGGGCCTCCAGGTGGGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGCTGGGGAGAGACTGAGCTGTGGAGGGCCTCCAGGTGGGGCTA  250

seq1  CAGAACTCAGGACGGGGTTGGTCTCTCTGGAGGGCGCAGCCCTGGGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCAGGACGGGGTTGGTCTCTCTGGAGGGCGCAGCCCTGGGAGCA  300

seq1  GGCCTCATTTGGCATATCTGGGACATATTGTCCCAAAGGGAGTGACAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCATTTGGCATATCTGGGACATATTGTCCCAAAGGGAGTGACAACT  350

seq1  GCCATTGTCACTGTCAGTAATCAATTGGAAAGCTCCCCTGAGCATTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGTCACTGTCAGTAATCAATTGGAAAGCTCCCCTGAGCATTTTTG  400

seq1  ACGAGAGGCAGCCCCACCCAGCCTTCCTGTGGATTTCTGAACAGGTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGGCAGCCCCACCCAGCCTTCCTGTGGATTTCTGAACAGGTTGCA  450

seq1  TCTGGACTCGGGCCTCAGTTTCCCTACTGTGCATTAGGCCAGGAGGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTCGGGCCTCAGTTTCCCTACTGTGCATTAGGCCAGGAGGCAGC  500

seq1  ACCTGTCACCCTGTGACAGAAAGGGGATCCCAGAACTTGTAGCTGCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCACCCTGTGACAGAAAGGGGATCCCAGAACTTGTAGCTGCTGCC  550

seq1  ATTCTGCACACGCATGCTGGCAGGCTGTCCTGGTGTGCAACAGGTTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCACACGCATGCTGGCAGGCTGTCCTGGTGTGCAACAGGTTGTCA  600

seq1  GTGAGGCCCAGGTAGGTCCCTAACAGGATGGTCTGGATTACAGGGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCCCAGGTAGGTCCCTAACAGGATGGTCTGGATTACAGGGGCTGG  650

seq1  GACTTGGTACAGTTTGGTGGCATTGGTTGGAAAGGTTGAGCAAAGAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTACAGTTTGGTGGCATTGGTTGGAAAGGTTGAGCAAAGAAGGG  700

seq1  AAAAGGAAGGGACCATGGTGACAGAGAGGCCAGCAAAGACAAGAAGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGGGACCATGGTGACAGAGAGGCCAGCAAAGACAAGAAGCCAG  750

seq1  ATCTTGAATCTGAAGAGCTGGGTTTTTCATGAAGGCAATGGCAGCCGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAATCTGAAGAGCTGGGTTTTTCATGAAGGCAATGGCAGCCGTGG  800

seq1  AAGTCTCCTGAGGACATGG-AATGTTCGGAATATCTGAGTGTCTCTCATA  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGTCTCCTGAGGACATGGAAATGTTCGGAATATCTGAGTGTCTCTCATA  850

seq1  GGTACAGAGTTTGAT-GGGAGTCAGGATGGTCTTGGGGCTCAGCCCCCAG  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGTACAGAGTTTGATGGGGAGTCAGGATGGTCTTGGGGCTCAGCCCCCAG  900

seq1  AGTACTGTG-AGGACTG-AGGCGGGAGGGTGAT-GGGAGGCAGGGGAAGA  945
      ||||||||| ||||||| ||||||||||||||| ||||||||||||||||
seq2  AGTACTGTGAAGGACTGAAGGCGGGAGGGTGATGGGGAGGCAGGGGAAGA  950

seq1  GG  947
      ||
seq2  GG  952

seq1: chr11_61610953_61612064
seq2: B6Ng01-232N23.g_68_1194 (reverse)

seq1  GATAACTA-GCCACCTGCAAGTCCCATTCCAGAAGG-TCTAACATACTCT  48
      |||||||| ||||||||||||| ||||||||||||| |||| |||||| |
seq2  GATAACTAGGCCACCTGCAAGT-CCATTCCAGAAGGTTCTAGCATACTAT  49

seq1  TCTAGTC-TCTGTA-GGCACCAGGCAAAGTGAC-GCACATATA---TACA  92
      ||||||| || ||| |||||||||||||||||| |||||||||   ||||
seq2  TCTAGTCTTCGGTAGGGCACCAGGCAAAGTGACAGCACATATATATTACA  99

seq1  TGCAAG-AAAACACTCCTGTACATTAAAAAAAAATCTAAAAGAATACATC  141
      |||||| |||||| ||||||||||| |||||||  |||||||||||||||
seq2  TGCAAGAAAAACAGTCCTGTACATT-AAAAAAATCCTAAAAGAATACATC  148

seq1  ACAT-CATATCTAGAGTAACAATGATAGTACTAAGAAATGAAATGAAAAT  190
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACATCCATATCTAGAGTAACAATGATAGTACTTAGAAATGAAATGAAAAT  198

seq1  TGATACTTAAGAGGGGTAATTTTTTATAT-CTTTACTAAAA-TTAAGTTA  238
      ||||||||||||||||| ||||||||||| ||||||||||| ||||||||
seq2  TGATACTTAAGAGGGGT-ATTTTTTATATCCTTTACTAAAATTTAAGTTA  247

seq1  ATGTAAATTTG-AACTTGATTGTAATG-ATATATGATAAGCCCTAAGACA  286
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  ATGTAAATTTGAAACTTGATTGTAATGAATATATGATAAGCCCTAAGACA  297

seq1  TTTATT-AAAACTAAACTAAGTT-AAAGAAAAAAAAAGAG-AAATAGCTG  333
      |||||| |||||||||||||||| |||||||||||||||| |||||||||
seq2  TTTATTAAAAACTAAACTAAGTTAAAAGAAAAAAAAAGAGAAAATAGCTG  347

seq1  GTTGATAATGGGCAGGTGGATCTCTGAGTTTGAGCCC-AACCTGGTCTAC  382
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  GTTGATAATGGGCAGGTAGATCTCTGAGTTTGAGCCCAAACCTGGTCTAC  397

seq1  AGAGTGAGTTCCAAGAAGATCAGAGCTACATAGAGAAGCCTTGTCTTTGA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAAGAAGATCAGAGCTACATAGAGAAGCCTTGTCTTTGA  447

seq1  AAGAAAATATCAAAATGTGACTAGTACACAAGAAAGCAGTAAAGAAGGAT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATATCAAAATGTGACTAGTACACAAGAAAGCAGTAAAGAAGGAT  497

seq1  CAAGGGTTGGGTGTGGTGGCACACATGCAATCCCAGAACTTTGGAGGCAG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTTGGGTGTGGTGGCACACATGCAATCCCAGAACTTTGGAGGCAG  547

seq1  AGGCAGGAAAATAACCACAAGTTTGAGGCCAGCCTGGCCTATCTAGTAAG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAAAATAACCACAAGTTTGAGGCCAGCCTGGCCTATCTAGTAAG  597

seq1  TTTCAGGCCAGGCAGGGTTGCATGGTGATATTCTGTCTCAAAAAAACTAA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCCAGGCAGGGTTGCATGGTGATATTCTGTCTCAAAAAAACTAA  647

seq1  TTACAATTTTATGCATGTGCACAGGATGTGCTCTAATGCCAAAGGCAGCC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTTTATGCATGTGCACAGGATGTGCTCTAATGCCAAAGGCAGCC  697

seq1  CTAGGTTAAAGGGGAAGGGAAACGAGTATAACACAGTATAACACCGGCAC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTAAAGGGGAAGGGAAACGAGTATAACACAGTATAACACCGGCAC  747

seq1  CCACTGCACTGCACAGACCTTATAGCAAGAACAGGATGAAGGGACATCAA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCACTGCACAGACCTTATAGCAAGAACAGGATGAAGGGACATCAA  797

seq1  ATCCCATGGTTGCTAGTTGTTGTTCCTTTCTGATTAGAAAACAAATCCAG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGGTTGCTAGTTGTTGTTCCTTTCTGATTAGAAAACAAATCCAG  847

seq1  TCAGGCAATTTGCTGGCCCAGATATGTTTTAGGATGCAATAAAGACAATA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAATTTGCTGGCCCAGATATGTTTTAGGATGCAATAAAGACAATA  897

seq1  GAGAACTGGGCACAGTGGCACACACCTTTAATCCTAGTACATTCAGGAGG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGGGCACAGTGGCACACACCTTTAATCCTAGTACATTCAGGAGG  947

seq1  TAAAGGCAAGTGGATGTCTGTGAGTTCTGGCCAGCCTCCTCTACATAGCG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCAAGTGGATGTCTGTGAGTTCTGGCCAGCCTCCTCTACATAGCG  997

seq1  AGTTAGAGGAACATCCAGGGCTATGTAGAGAGACCCTGTCTCAAACAAAC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAGGAACATCCAGGGCTATGTAGAGAGACCCTGTCTCAAACAAAC  1047

seq1  AAAATTCAACAAAACATCAGAGAAAACAAGAAGGCTATAATAGATTGAAA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAACAAAACATCAGAGAAAACAAGAAGGCTATAATAGATTGAAA  1097

seq1  AATTTAGGTACATCTAATACATAGGAATTC  1112
      ||||||||||||||||||||||||||||||
seq2  AATTTAGGTACATCTAATACATAGGAATTC  1127