BAC Information

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BAC

Clone NameB6Ng01-234E16
Chromosome11 (Build37)
Map Location 101,282,577 - 101,465,391
singlet/doubletdoublet
Overlap gene1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306
Upstream geneFkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1
Downstream geneRdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234E16.bB6Ng01-234E16.g
ACCGA046097GA046098
length8411,067
definitionB6Ng01-234E16.b B6Ng01-234E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,464,827 - 101,465,391)(101,282,577 - 101,283,639)
sequence
gaattctcctgccttggcctcctgctggaattaagatgtatgcgacagtc
gcctggcatctaaaagcttttcatatgttgagaaccgtttttgtgatgtg
ggttgggttcttttgtctcctgtcttttctttctccttttttctttttga
tacagaatgatctgggactcaatatgcatagttcattttatgaggtattc
accagagaagactgcttgaacatgagtttatgccaatagaaagtctttat
taagcaggccaggaactacacagggtgttcaggatcccagtgtagcccca
gcctttttcagggtgtgcttttaagcacaaaaaccacatgctgggttggc
atacttcaattaacaagaacagttagccagaagcaaaactacagaagcca
aaaagcaaggttagtacctttagagactacagattttgatggattaggcc
tttgttttagattaggcaactgatgctgtctatgagctgagttttacagc
ccaaatggtactttcattatggagtcagtctaggtgccttctacggcctg
gtaccctgttatggtccatactggctttaaacttgaaatcctcctgcctc
agcatcttgagtgctgggattataagcgtgagtcattactccccgatttt
gttttgtttggtttgtttttttgaggcaagatttctctgtgtagccctga
ctctcctggaactcggagatccatctgtgtctgcctccaaatgctgggat
taaccagtgtgtcaccatgccaggctctggatttgttttgtctttctctt
atctatatgtgttatttgtttggggtggttatttttgtttg
gaattcactctgtagaccagccttgaacttaagagatctgcctgcttctg
cctcctgagtgctgggattaaaggtgtgcaccactattactacctcctgg
ctggttttttgtttgtttgttttaagatggctcaaaactaagagtacttg
cttctcctccaaaggattcaagttttatttccaaagctcacatcagacaa
ttcacaaccaactgtaactccagaggtccaacacacacacacacacacac
acacacacacacacacacacacacaatcttaggcatggtgaaacacacct
tcccagcactagggatcccagaagtggatctctgagtttgaggccagtct
ggtctatagagtgagttccagagctccatagttaagattctgtatcaaaa
gtaaataaataaaataataaatctctaatttctcttgtttctgctaaata
tacaatgagtcaaaaatacagtatattagcaccagcacgtggcccactga
ggaagttccaatatcccggtctgggccttgataattccccagctactgtg
tgcagtcagacgcagaatggttaagatgaccagcaggtgctgtacttcct
acctctgcataatgttccacctgagccagctccacctcatcgtctccttc
ccagtctctccagttatcgaagtccacagagagccacacaggctgtaaga
ggaagtgcagaccatcacagcagggaggacaggagcaacagtgcagggaa
agggtgggggcatgtgcatagacaaggaactcagtgtggtacagggcccc
caacctgccctccaatgtacatccacaaatgttcaccagaaacaactcag
taccaacaccaatgccaaaaatgcagggtctgaaaaagcagagttctact
ctccaagggctgatggactgggggtggtcaacacaaagcatcctaggatt
caaccaagcaagatgtctgagtagcagtgagctgggaatttgaaactgag
tcctatggaagagtaaccactgctcttaaaaactggacctctctagctgg
ggtgtgggtggcatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101464827_101465391
seq2: B6Ng01-234E16.b_324_885 (reverse)

seq1  CAAACAAACAAAATAACCACCCCAAACAAATAACACATATAGATAAGAGA  50
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  CAAACA---AAAATAACCACCCCAAACAAATAACACATATAGATAAGAGA  47

seq1  AAGACAAAACAAATCCAGAGCCTGGCATGGTGACACACTGGTTAATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAACAAATCCAGAGCCTGGCATGGTGACACACTGGTTAATCCCA  97

seq1  GCATTTGGAGGCAGACACAGATGGATCTCCGAGTTCCAGGAGAGTCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGAGGCAGACACAGATGGATCTCCGAGTTCCAGGAGAGTCAGGG  147

seq1  CTACACAGAGAAATCTTGCCTCAAAAAAACAAACCAAACAAAACAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGAGAAATCTTGCCTCAAAAAAACAAACCAAACAAAACAAAATC  197

seq1  GGGGAGTAATGACTCACGCTTATAATCCCAGCACTCAAGATGCTGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTAATGACTCACGCTTATAATCCCAGCACTCAAGATGCTGAGGCA  247

seq1  GGAGGATTTCAAGTTTAAAGCCAGTATGGACCATAACAGGGTACCAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTTCAAGTTTAAAGCCAGTATGGACCATAACAGGGTACCAGGCC  297

seq1  GTAGAAGGCACCTAGACTGACTCCATAATGAAAGTACCATTTGGGCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGCACCTAGACTGACTCCATAATGAAAGTACCATTTGGGCTGTA  347

seq1  AAACTCAGCTCATAGACAGCATCAGTTGCCTAATCTAAAACAAAGGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGCTCATAGACAGCATCAGTTGCCTAATCTAAAACAAAGGCCTA  397

seq1  ATCCATCAAAATCTGTAGTCTCTAAAGGTACTAACCTTGCTTTTTGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCAAAATCTGTAGTCTCTAAAGGTACTAACCTTGCTTTTTGGCTT  447

seq1  CTGTAGTTTTGCTTCTGGCTAACTGTTCTTGTTAATTGAAGTATGCCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTTTGCTTCTGGCTAACTGTTCTTGTTAATTGAAGTATGCCAAC  497

seq1  CCAGCATGTGGTTTTTGTGCTTAAAAGCACACCCTGAAAAAGGCTGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGTGGTTTTTGTGCTTAAAAGCACACCCTGAAAAAGGCTGGGGC  547

seq1  TACACTGGGATCCTG  565
      |||||||||||||||
seq2  TACACTGGGATCCTG  562

seq1: chr11_101282577_101283639
seq2: B6Ng01-234E16.g_67_1133

seq1  GAATTCACTCTGTAGACCAGCCTTGAACTTAAGAGATCTGCCTGCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGCCTTGAACTTAAGAGATCTGCCTGCTTCTG  50

seq1  CCTCCTGAGTGCTGGGATTAAAGGTGTGCACCACTATTACTACCTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGAGTGCTGGGATTAAAGGTGTGCACCACTATTACTACCTCCTGG  100

seq1  CTGGTTTTTTGTTTGTTTGTTTTAAGATGGCTCAAAACTAAGAGTACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTTTGTTTGTTTGTTTTAAGATGGCTCAAAACTAAGAGTACTTG  150

seq1  CTTCTCCTCCAAAGGATTCAAGTTTTATTTCCAAAGCTCACATCAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTCCAAAGGATTCAAGTTTTATTTCCAAAGCTCACATCAGACAA  200

seq1  TTCACAACCAACTGTAACTCCAGAGGTCCAACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACCAACTGTAACTCCAGAGGTCCAACACACACACACACACACAC  250

seq1  ACACACACACACACACACACACACAATCTTAGGCATGGTGAAACACACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACAATCTTAGGCATGGTGAAACACACCT  300

seq1  TCCCAGCACTAGGGATCCCAGAAGTGGATCTCTGAGTTTGAGGCCAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTAGGGATCCCAGAAGTGGATCTCTGAGTTTGAGGCCAGTCT  350

seq1  GGTCTATAGAGTGAGTTCCAGAGCTCCATAGTTAAGATTCTGTATCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATAGAGTGAGTTCCAGAGCTCCATAGTTAAGATTCTGTATCAAAA  400

seq1  GTAAATAAATAAAATAATAAATCTCTAATTTCTCTTGTTTCTGCTAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAATAAAATAATAAATCTCTAATTTCTCTTGTTTCTGCTAAATA  450

seq1  TACAATGAGTCAAAAATACAGTATATTAGCACCAGCACGTGGCCCACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGAGTCAAAAATACAGTATATTAGCACCAGCACGTGGCCCACTGA  500

seq1  GGAAGTTCCAATATCCCGGTCTGGGCCTTGATAATTCCCCAGCTACTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCCAATATCCCGGTCTGGGCCTTGATAATTCCCCAGCTACTGTG  550

seq1  TGCAGTCAGACGCAGAATGGTTAAGATGACCAGCAGGTGCTGTACTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCAGACGCAGAATGGTTAAGATGACCAGCAGGTGCTGTACTTCCT  600

seq1  ACCTCTGCATAATGTTCCACCTGAGCCAGCTCCACCTCATCGTCTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCATAATGTTCCACCTGAGCCAGCTCCACCTCATCGTCTCCTTC  650

seq1  CCAGTCTCTCCAGTTATCGAAGTCCACAGAGAGCCACACAGGCTGTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCTCCAGTTATCGAAGTCCACAGAGAGCCACACAGGCTGTAAGA  700

seq1  GGAAGTGCAGACCATCACAGCAGGGAGGACAGGAGCAACAGTGCAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGCAGACCATCACAGCAGGGAGGACAGGAGCAACAGTGCAGGGAA  750

seq1  AGGGTGGGGGCATGTGCATAGACAAGGAACTCAGTGTGGTACAGGGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGGGCATGTGCATAGACAAGGAACTCAGTGTGGTACAGGGCCCC  800

seq1  CAACCTGCCCTCCAATGTACATCCACAAATGTTCACCAGAAACAACTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGCCCTCCAATGTACATCCACAAATGTTCACCAGAAACAACTCAG  850

seq1  TACCAACACCAATGCCAAAAATGCAGGGTCTGAAAAAGCAGAGTTCTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TACCAACACCAATGCCAAAAATGCAGGGTCTGAAAAAGCAGAGTTCTACT  900

seq1  CTCCAAGGGCTGATGGACT-GGGGTGGTCAACACAAAGCATCCTAGGATT  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCCAAGGGCTGATGGACTGGGGGTGGTCAACACAAAGCATCCTAGGATT  950

seq1  CAACCAAGCAAGATGTCTGAGTAGCAGTGAGCTGGGAA-TTGAAACTGAG  998
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAACCAAGCAAGATGTCTGAGTAGCAGTGAGCTGGGAATTTGAAACTGAG  1000

seq1  TCCTATGGAAGAGTAACCACTGCTCTTAAAAACTGGGCCTCTCTAGCT-G  1047
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  TCCTATGGAAGAGTAACCACTGCTCTTAAAAACTGGACCTCTCTAGCTGG  1050

seq1  GGTGT-GGTGGCATACT  1063
      ||||| |||||||||||
seq2  GGTGTGGGTGGCATACT  1067