BAC Information

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BAC

Clone NameB6Ng01-234M21
Chromosome11 (Build37)
Map Location 54,299,545 - 54,458,625
singlet/doubletdoublet
Overlap geneFnip1, Rapgef6
Upstream geneLOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411
Downstream geneCdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234M21.bB6Ng01-234M21.g
ACCGA046460GA046461
length1,1361,085
definitionB6Ng01-234M21.b B6Ng01-234M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,457,449 - 54,458,625)(54,299,545 - 54,300,632)
sequence
gaattcaatgccagctgcaactacttaggaagaccctgtttcaaaaaaaa
aaaaaaaaaagccaagaactagtaatctggttcaatggcagattacttgc
cttacatggggaagaccccccaagaactgcaagaaaaacttatccaaatt
catttaaaatggtgtcaaaataatacattctcaaaaatactgagcagcta
gtttaacagataaaaatgaaaaactaattctcacaaactggcctcagaaa
tctgtaggaatcttatcttttaggcttttagtgactgaaatgattgacat
attctactgcatacatacaagagaggtgtagcacaaagcaaaaaactcaa
caaagaaaaaattcaataaaaatacatcctgaatttaaacaaacccattt
ctagtagatcttttttccttggtaccaattcaaaattatcatatgggaaa
tactcaactggctgctcctggtgacagcaatttctgtttcctgctatgaa
cctagtgtccatgcctagtaacctatttccactctccaaagaatatgcat
aatgccattggtttagctgatcagaaagggtctataatgagccacaattg
taacattctctagttttagataatacatgacataactataccaccagttg
caatgatgtacatactccacaccaagccatcagggtttctggaaacagat
ctgaagaaattacctgctaaggaacgctccacgtgaactattttctgctt
tctggcccctaggttcttctccttttccacagtgacttcaaacactcctc
aaccttttagtgtaggctatccctctaacagtctcttcacccagcctcta
ctggtgtcagaggttgctgatatgtacaactgtaaatattttggctcttt
taaagttgtggtttttataaccttcccacctcatgaaagcagtgactcag
aaatgatgagcatgagctctagagcggattagatagagccatcacattta
gtctcagtatatatatgaagagaatgtctcccagctagagtagactgtaa
gaaatcttatctctgaaatgatgtgtgtgatggactacatgtgcttggtg
tgttcaatggtgttaggcatgatgcatcagctctct
gaattcttgagaaaatgactagcatcataaggttttactgttacctatta
tttcaccttaggcgggaattgtcagacaggtaaggatttgagtaactttg
gaggtggaatgttaagaaggggacagtttcagtctgaaagctctttgtgc
gtctacaccaatgtccacatatacagccttttgtaaggaagtgtaaagga
ggaaggaatttaaagacgttaaattttgaaatagctagagaatgttgaag
aaagagttgaacattgagaaatggaagggttgctgcattataattgcaga
aatttttgttgcagaaaaaatagtatcagcaatttgagaaacacagatgc
tatttaaagcaaaaggctatctgtcctaggtgtacaactcctacataact
tcttagactagtgcttatcagcctgtgacttgcaacctcttttgggggag
aggtgttgactgagcctttcataggaggtcacatatcagatatactgcat
atgagatatttgcattatgatttataacaattgcagaattacagtcatga
agtagaaatgaaatagttttgtagttggggtcaccacagcatgaggaact
gtattaaaggacctcagcattagcatggttaagaaccacttatttagact
gccataattgaataaaagcaacatataattctgcttcctgacttgaggat
tgaattccttccccacatccacctccccctttttgtggagagtggatttc
tttttgtagccctgactggcccggaactctctatgtagaccaggctggct
tcaaattcatagagatctgcttgcttagttaagatgtgtgccaccactcc
tggcctttatgctttttcttgtggtattcaggctgctattagctgctatt
atttcttgtagttgtgtgtatgtgtgtgtgtagaactcttgggaatcttg
ctgtataagactgtactgtgtcttctgttttcatagtggttaactgcagc
tctaaaaacatcagtttcttctgtaatttatccactgctgcaaatagcaa
tttttggtgcttatttgtcagtaaaatcttgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54457449_54458625
seq2: B6Ng01-234M21.b_49_1184 (reverse)

seq1  AGAGAGCTGATGCCACCCACTGGCCCCCTACACACATGGACACACACAAG  50
      |||||||||||||  |    ||   ||  ||||   || |||||| ||||
seq2  AGAGAGCTGATGCATC---ATG---CCTAACACCATTGAACACAC-CAAG  43

seq1  CACATGTATGTCCCCATCACACACATCTATCTCAGAGATAAGGAAATATT  100
      |||||||| ||  |||||||||||||| || |||||||||||     |||
seq2  CACATGTA-GT--CCATCACACACATC-ATTTCAGAGATAAG-----ATT  84

seq1  CTTTACAAGTTCTTACTTCTAGCTGGGGAGACAAATTTTCTCTTCAATTA  150
        |||| |||   ||| ||||||| ||||||||    |||||||||    
seq2  TCTTAC-AGT--CTAC-TCTAGCT-GGGAGACA----TTCTCTTCA----  121

seq1  ATTAATTAATTAACTTGAGACTTAAATGTGATGGCTCTATTCTAATTCCG  200
            ||  ||   |||||| ||||||||||||||||| ||||| ||||
seq2  ------TATATATACTGAGAC-TAAATGTGATGGCTCTA-TCTAA-TCCG  162

seq1  CTCTAGAGCTCATTGCTCATTCATTTCTGAGTCACTGCTTTCATTGAGGT  250
      |||||||||||| |||||| ||||||||||||||||||||||| ||||||
seq2  CTCTAGAGCTCA-TGCTCA-TCATTTCTGAGTCACTGCTTTCA-TGAGGT  209

seq1  GGGAAGGTTATAAAAACCACAACTTTAAAAGAGCCAAAATATTTACAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTTATAAAAACCACAACTTTAAAAGAGCCAAAATATTTACAGTT  259

seq1  GTACATATCAGCAACCTCTGACACCAGTAGAGGCTGGGTGAAGAGACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATCAGCAACCTCTGACACCAGTAGAGGCTGGGTGAAGAGACTGT  309

seq1  TAGAGGGATAGCCTACACTAAAAGGTTGAGGAGTGTTTGAAGTCACTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGATAGCCTACACTAAAAGGTTGAGGAGTGTTTGAAGTCACTGTG  359

seq1  GAAAAGGAGAAGAACCTAGGGGCCAGAAAGCAGAAAATAGTTCACGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGAAGAACCTAGGGGCCAGAAAGCAGAAAATAGTTCACGTGGA  409

seq1  GCGTTCCTTAGCAGGTAATTTCTTCAGATCTGTTTCCAGAAACCCTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCCTTAGCAGGTAATTTCTTCAGATCTGTTTCCAGAAACCCTGATG  459

seq1  GCTTGGTGTGGAGTATGTACATCATTGCAACTGGTGGTATAGTTATGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGTGGAGTATGTACATCATTGCAACTGGTGGTATAGTTATGTCA  509

seq1  TGTATTATCTAAAACTAGAGAATGTTACAATTGTGGCTCATTATAGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATCTAAAACTAGAGAATGTTACAATTGTGGCTCATTATAGACCC  559

seq1  TTTCTGATCAGCTAAACCAATGGCATTATGCATATTCTTTGGAGAGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATCAGCTAAACCAATGGCATTATGCATATTCTTTGGAGAGTGGA  609

seq1  AATAGGTTACTAGGCATGGACACTAGGTTCATAGCAGGAAACAGAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTACTAGGCATGGACACTAGGTTCATAGCAGGAAACAGAAATTG  659

seq1  CTGTCACCAGGAGCAGCCAGTTGAGTATTTCCCATATGATAATTTTGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCAGGAGCAGCCAGTTGAGTATTTCCCATATGATAATTTTGAAT  709

seq1  TGGTACCAAGGAAAAAAGATCTACTAGAAATGGGTTTGTTTAAATTCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCAAGGAAAAAAGATCTACTAGAAATGGGTTTGTTTAAATTCAGG  759

seq1  ATGTATTTTTATTGAATTTTTTCTTTGTTGAGTTTTTTGCTTTGTGCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTTATTGAATTTTTTCTTTGTTGAGTTTTTTGCTTTGTGCTAC  809

seq1  ACCTCTCTTGTATGTATGCAGTAGAATATGTCAATCATTTCAGTCACTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTTGTATGTATGCAGTAGAATATGTCAATCATTTCAGTCACTAA  859

seq1  AAGCCTAAAAGATAAGATTCCTACAGATTTCTGAGGCCAGTTTGTGAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAAAAGATAAGATTCCTACAGATTTCTGAGGCCAGTTTGTGAGAA  909

seq1  TTAGTTTTTCATTTTTATCTGTTAAACTAGCTGCTCAGTATTTTTGAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTCATTTTTATCTGTTAAACTAGCTGCTCAGTATTTTTGAGAA  959

seq1  TGTATTATTTTGACACCATTTTAAATGAATTTGGATAAGTTTTTCTTGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATTTTGACACCATTTTAAATGAATTTGGATAAGTTTTTCTTGCA  1009

seq1  GTTCTTGGGGGGTCTTCCCCATGTAAGGCAAGTAATCTGCCATTGAACCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGGGGGTCTTCCCCATGTAAGGCAAGTAATCTGCCATTGAACCA  1059

seq1  GATTACTAGTTCTTGGCTTTTTTTTTTTTTTTTTTGAAACAGGGTCTTCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTAGTTCTTGGCTTTTTTTTTTTTTTTTTTGAAACAGGGTCTTCC  1109

seq1  TAAGTAGTTGCAGCTGGCATTGAATTC  1177
      |||||||||||||||||||||||||||
seq2  TAAGTAGTTGCAGCTGGCATTGAATTC  1136

seq1: chr11_54299545_54300632
seq2: B6Ng01-234M21.g_67_1151

seq1  GAATTCTTGAGAAAATGACTAGCATCATAAGGTTTTACTGTTACCTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGAAAATGACTAGCATCATAAGGTTTTACTGTTACCTATTA  50

seq1  TTTCACCTTAGGCGGGAATTGTCAGACAGGTAAGGATTTGAGTAACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTTAGGCGGGAATTGTCAGACAGGTAAGGATTTGAGTAACTTTG  100

seq1  GAGGTGGAATGTTAAGAAGGGGACAGTTTCAGTCTGAAAGCTCTTTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGAATGTTAAGAAGGGGACAGTTTCAGTCTGAAAGCTCTTTGTGC  150

seq1  GTCTACACCAATGTCCACATATACAGCCTTTTGTAAGGAAGTGTAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACCAATGTCCACATATACAGCCTTTTGTAAGGAAGTGTAAAGGA  200

seq1  GGAAGGAATTTAAAGACGTTAAATTTTGAAATAGCTAGAGAATGTTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAATTTAAAGACGTTAAATTTTGAAATAGCTAGAGAATGTTGAAG  250

seq1  AAAGAGTTGAACATTGAGAAATGGAAGGGTTGCTGCATTATAATTGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTGAACATTGAGAAATGGAAGGGTTGCTGCATTATAATTGCAGA  300

seq1  AATTTTTGTTGCAGAAAAAATAGTATCAGCAATTTGAGAAACACAGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGTTGCAGAAAAAATAGTATCAGCAATTTGAGAAACACAGATGC  350

seq1  TATTTAAAGCAAAAGGCTATCTGTCCTAGGTGTACAACTCCTACATAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAGCAAAAGGCTATCTGTCCTAGGTGTACAACTCCTACATAACT  400

seq1  TCTTAGACTAGTGCTTATCAGCCTGTGACTTGCAACCTCTTTTGGGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGACTAGTGCTTATCAGCCTGTGACTTGCAACCTCTTTTGGGGGAG  450

seq1  AGGTGTTGACTGAGCCTTTCATAGGAGGTCACATATCAGATATACTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTGACTGAGCCTTTCATAGGAGGTCACATATCAGATATACTGCAT  500

seq1  ATGAGATATTTGCATTATGATTTATAACAATTGCAGAATTACAGTCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATATTTGCATTATGATTTATAACAATTGCAGAATTACAGTCATGA  550

seq1  AGTAGAAATGAAATAGTTTTGTAGTTGGGGTCACCACAGCATGAGGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATGAAATAGTTTTGTAGTTGGGGTCACCACAGCATGAGGAACT  600

seq1  GTATTAAAGGACCTCAGCATTAGCATGGTTAAGAACCACTTATTTAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAGGACCTCAGCATTAGCATGGTTAAGAACCACTTATTTAGACT  650

seq1  GCCATAATTGAATAAAAGCAACATATAATTCTGCTTCCTGACTTGAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAATTGAATAAAAGCAACATATAATTCTGCTTCCTGACTTGAGGAT  700

seq1  TGAATTCCTTCCCCACATCCACCTCCCCCTTTTTGTGGAGAGTGGATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCTTCCCCACATCCACCTCCCCCTTTTTGTGGAGAGTGGATTTC  750

seq1  TTTTTGTAGCCCTGACTGGCCCGGAACTCTCTATGTAGACCAGGCTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAGCCCTGACTGGCCCGGAACTCTCTATGTAGACCAGGCTGGCT  800

seq1  TCAAATTCATAGAGATCTGCTTGCTTAGTTAAGATGTGTGCCACCACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCATAGAGATCTGCTTGCTTAGTTAAGATGTGTGCCACCACTCC  850

seq1  TGGCCTTTATGCTTTTTCTTGTGGTATTCAGGCTGCTATTAGCTGCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTATGCTTTTTCTTGTGGTATTCAGGCTGCTATTAGCTGCTATT  900

seq1  ATTTCTTTGTAGTTGTGTGTATGTGTGTGTGTAGAACTCTTGGGAATCTT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTC-TTGTAGTTGTGTGTATGTGTGTGTGTAGAACTCTTGGGAATCTT  949

seq1  GCTGTTATAGACTGTACTGTGTCTTCTGTTTTCATAGTGGTTAACTGCAG  1000
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATAAGACTGTACTGTGTCTTCTGTTTTCATAGTGGTTAACTGCAG  999

seq1  CTCTAAAAACATCAGTTTCTTCTGTTATTTAT-CACTTGGCTTGCAATAG  1049
      ||||||||||||||||||||||||| |||||| ||||  |||   |||||
seq2  CTCTAAAAACATCAGTTTCTTCTGTAATTTATCCACT--GCTGCAAATAG  1047

seq1  C-ATTTTTTGTGCTTATTTGTCAGTAAAATTCCTTGATAA  1088
      | |||||| |||||||||||||||||||||  ||||||||
seq2  CAATTTTTGGTGCTTATTTGTCAGTAAAAT--CTTGATAA  1085