BAC Information

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BAC

Clone NameB6Ng01-235O12
Chromosome11 (Build37)
Map Location 121,598,676 - 121,735,547
singlet/doubletdoublet
Overlap genePtchd3
Upstream geneHmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
Downstream geneLOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235O12.bB6Ng01-235O12.g
ACCGA047265GA047266
length9611,094
definitionB6Ng01-235O12.b B6Ng01-235O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,734,598 - 121,735,547)(121,598,676 - 121,599,779)
sequence
gaattcaacattttgaaaactaatagtcacataacagggatctttctgga
actgcttcaatgcatcagcagcagatcccatgttctgatgttctgttgaa
tggcaaggaagtgaacatggagggtggtctagaaagactgccatgtgaat
ctttaagatattcatctctaccctatccaatatgtgtctgtgtttaaata
aacactgtcagaagctagagggaagcaccttagaaccctctcttgcatct
cataacacaatggggttggttctctttgcccaaggatcattaaatctgtt
agagcatatcctggagttcttgtctggcttgagaaggcctttactgtgct
ttaaactctagcccccttggtcattttggtgcctcttattgtctcaagtg
aaacagactgctttagaactaatgtctaggcttactcctatccctatagt
atgggcttccaggagctaacagaaatggaggcatgactgtactctctgag
tctactcttcaagattttcaccaccttagtaatttcccaaagattagaca
gttaatttgtgactcagggttccacatcgatgaatttctgcttgaaaaac
ctgggcatgctatacacacctataatctcagcctttaagaggtagaggta
ggaggaatttcaattcaagactaccctgggctacatgtgagatacactgt
cctcatggaagaaaaagaaatggaaaggaaaaggagttgtagaaggatat
agatgaggaaaaatggaaggagaggggaggaggaagaagagactatttaa
agatgttattttctaatttcaaacatgcagagatctatctgtttgttaat
gattttcctaataatccaatgtgtttttcttagaaatcaaccattgtatt
gaatatttgtaaaaccatcctaagttgatttattaatgtaaggaggaagt
ggactgggttc
gaattcactttggaaatgaggtgaatgtagtggtagtgctggacccagga
tagccagaagcagggagggtcttgctttcctgcccctctgcttggggtca
gagtcagtgctttctctgtgtggtgagccaggtcagtatcctcatgcctg
aggactcatgaacccagagaaggacatggaggcataaattggcctttggt
ggtagagacaagccctgggcccagggaactgtggcaagggtcacccgaag
gtaggcctgactgggcccgatttctccattcagtctcttgttttgtcata
aaacatgagatgtatgaaagtctcagagaagacttctcaggtttgaaatg
tgtcttcttcccaacagtgaggagagctggagggctctgtgctgtattat
atcctggccagcagttcagaggagcaggtggcctggcatggtttccacct
ctgtcactagaagggtcagtggatagagctctggcaggcaccaaagggcc
ccagcatctttgtctcccctataggggcgttccttctggaacgtggcctc
tctgacctggacagttacagcccatggcagcacttactatgccttgactt
tgagggtctttgtgcctaaggtatgagggttggctccatgttccttgggg
aatcagtcctgtctaaaaacatcaatggtggacagtgtgacacttgccag
ggttcagaggttcatatcctagtttgttgactaacttcagattttccttc
ctcccagtaagtaccaccctctgaactgtcttctgggggagataattaga
gaggctttggtaagtcacacaggactctgcttatactaggtaccaccctc
aagctgttcccctttgaacaagttgactggttttcttctggtcctccgtc
atggaagccaggaagtagatacctgttgtatgtccccttcactgtataac
tttcttctgctcctgttctttgtgctagtgtccatttgaatgctttcatg
ggaaccagatttagctctaagctttgggcagtggggcagaagtagctgag
ggtctgatgatggtctgaaagaagagtagagttcagcgggagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_121734598_121735547
seq2: B6Ng01-235O12.b_46_1006 (reverse)

seq1  GAACCCAG-ACACATCCTCCTTACACT-ATAAATCAACTTA-GAT-GTTT  46
      ||||||||  ||| ||||||||||| | ||||||||||||| ||| ||||
seq2  GAACCCAGTCCACTTCCTCCTTACATTAATAAATCAACTTAGGATGGTTT  50

seq1  TAC-AATATTCAATACAAT-GTTGA-TTCTAAG-AAAACACATTGGATTA  92
      ||| ||||||||||||||| ||||| ||||||| ||||||||||||||||
seq2  TACAAATATTCAATACAATGGTTGATTTCTAAGAAAAACACATTGGATTA  100

seq1  TTAGG-AAATCA-TAACAAACAGATAGATCTCTGCATGTTTGATA-TAG-  138
      ||||| |||||| |||||||||||||||||||||||||||||| | ||| 
seq2  TTAGGAAAATCATTAACAAACAGATAGATCTCTGCATGTTTGAAATTAGA  150

seq1  AAATAACATCTTTTAAATAGTCTCTTCTTCCTCCTCCCCTCTCCTTCCAT  188
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATAACATC-TTTAAATAGTCTCTTCTTCCTCCTCCCCTCTCCTTCCAT  199

seq1  TTTTCCTCATCTATATCCTTCTACAACTCCTTTTCCTTTCCATTTCTTTT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCATCTATATCCTTCTACAACTCCTTTTCCTTTCCATTTCTTTT  249

seq1  TCTTCCATGAGGACAGTGTATCTCACATGTAGCCCAGGGTAGTCTTGAAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATGAGGACAGTGTATCTCACATGTAGCCCAGGGTAGTCTTGAAT  299

seq1  TGAAATTCCTCCTACCTCTACCTCTTAAAGGCTGAGATTATAGGTGTGTA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCCTCCTACCTCTACCTCTTAAAGGCTGAGATTATAGGTGTGTA  349

seq1  TAGCATGCCCAGGTTTTTCAAGCAGAAATTCATCGATGTGGAACCCTGAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGCCCAGGTTTTTCAAGCAGAAATTCATCGATGTGGAACCCTGAG  399

seq1  TCACAAATTAACTGTCTAATCTTTGGGAAATTACTAAGGTGGTGAAAATC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATTAACTGTCTAATCTTTGGGAAATTACTAAGGTGGTGAAAATC  449

seq1  TTGAAGAGTAGACTCAGAGAGTACAGTCATGCCTCCATTTCTGTTAGCTC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGTAGACTCAGAGAGTACAGTCATGCCTCCATTTCTGTTAGCTC  499

seq1  CTGGAAGCCCATACTATAGGGATAGGAGTAAGCCTAGACATTAGTTCTAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCCCATACTATAGGGATAGGAGTAAGCCTAGACATTAGTTCTAA  549

seq1  AGCAGTCTGTTTCACTTGAGACAATAAGAGGCACCAAAATGACCAAGGGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTGTTTCACTTGAGACAATAAGAGGCACCAAAATGACCAAGGGG  599

seq1  GCTAGAGTTTAAAGCACAGTAAAGGCCTTCTCAAGCCAGACAAGAACTCC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGTTTAAAGCACAGTAAAGGCCTTCTCAAGCCAGACAAGAACTCC  649

seq1  AGGATATGCTCTAACAGATTTAATGATCCTTGGGCAAAGAGAACCAACCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGCTCTAACAGATTTAATGATCCTTGGGCAAAGAGAACCAACCC  699

seq1  CATTGTGTTATGAGATGCAAGAGAGGGTTCTAAGGTGCTTCCCTCTAGCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTTATGAGATGCAAGAGAGGGTTCTAAGGTGCTTCCCTCTAGCT  749

seq1  TCTGACAGTGTTTATTTAAACACAGACACATATTGGATAGGGTAGAGATG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGTGTTTATTTAAACACAGACACATATTGGATAGGGTAGAGATG  799

seq1  AATATCTTAAAGATTCACATGGCAGTCTTTCTAGACCACCCTCCATGTTC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTAAAGATTCACATGGCAGTCTTTCTAGACCACCCTCCATGTTC  849

seq1  ACTTCCTTGCCATTCAACAGAACATCAGAACATGGGATCTGCTGCTGATG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTGCCATTCAACAGAACATCAGAACATGGGATCTGCTGCTGATG  899

seq1  CATTGAAGCAGTTCCAGAAAGATCCCTGTTATGTGACTATTAGTTTTCAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGCAGTTCCAGAAAGATCCCTGTTATGTGACTATTAGTTTTCAA  949

seq1  AATGTTGAATTC  950
      ||||||||||||
seq2  AATGTTGAATTC  961

seq1: chr11_121598676_121599779
seq2: B6Ng01-235O12.g_70_1163

seq1  GAATTCACTTTGGAAATGAGGTGAATGTAGTGGTAGTGCTGGACCCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGGAAATGAGGTGAATGTAGTGGTAGTGCTGGACCCAGGA  50

seq1  TAGCCAGAAGCAGGGAGGGTCTTGCTTTCCTGCCCCTCTGCTTGGGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGAAGCAGGGAGGGTCTTGCTTTCCTGCCCCTCTGCTTGGGGTCA  100

seq1  GAGTCAGTGCTTTCTCTGTGTGGTGAGCCAGGTCAGTATCCTCATGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTGCTTTCTCTGTGTGGTGAGCCAGGTCAGTATCCTCATGCCTG  150

seq1  AGGACTCATGAACCCAGAGAAGGACATGGAGGCATAAATTGGCCTTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCATGAACCCAGAGAAGGACATGGAGGCATAAATTGGCCTTTGGT  200

seq1  GGTAGAGACAAGCCCTGGGCCCAGGGAACTGTGGCAAGGGTCACCCGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGACAAGCCCTGGGCCCAGGGAACTGTGGCAAGGGTCACCCGAAG  250

seq1  GTAGGCCTGACTGGGCCCGATTTCTCCATTCAGTCTCTTGTTTTGTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCTGACTGGGCCCGATTTCTCCATTCAGTCTCTTGTTTTGTCATA  300

seq1  AAACATGAGATGTATGAAAGTCTCAGAGAAGACTTCTCAGGTTTGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAGATGTATGAAAGTCTCAGAGAAGACTTCTCAGGTTTGAAATG  350

seq1  TGTCTTCTTCCCAACAGTGAGGAGAGCTGGAGGGCTCTGTGCTGTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTCCCAACAGTGAGGAGAGCTGGAGGGCTCTGTGCTGTATTAT  400

seq1  ATCCTGGCCAGCAGTTCAGAGGAGCAGGTGGCCTGGCATGGTTTCCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCCAGCAGTTCAGAGGAGCAGGTGGCCTGGCATGGTTTCCACCT  450

seq1  CTGTCACTAGAAGGGTCAGTGGATAGAGCTCTGGCAGGCACCAAAGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTAGAAGGGTCAGTGGATAGAGCTCTGGCAGGCACCAAAGGGCC  500

seq1  CCAGCATCTTTGTCTCCCCTATAGGGGCGTTCCTTCTGGAACGTGGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTTTGTCTCCCCTATAGGGGCGTTCCTTCTGGAACGTGGCCTC  550

seq1  TCTGACCTGGACAGTTACAGCCCATGGCAGCACTTACTATGCCTTGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTGGACAGTTACAGCCCATGGCAGCACTTACTATGCCTTGACTT  600

seq1  TGAGGGTCTTTGTGCCTAAGGTATGAGGGTTGGCTCCATGTTCCTTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCTTTGTGCCTAAGGTATGAGGGTTGGCTCCATGTTCCTTGGGG  650

seq1  AATCAGTCCTGTCTAAAAACATCAATGGTGGACAGTGTGACACTTGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCCTGTCTAAAAACATCAATGGTGGACAGTGTGACACTTGCCAG  700

seq1  GGTTCAGAGGTTCATATCCTAGTTTGTTGACTAACTTCAGATTTTCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGAGGTTCATATCCTAGTTTGTTGACTAACTTCAGATTTTCCTTC  750

seq1  CTCCCAGTAAGTACCACCCTCTGAACTGTCTTCTGGGGGAGATAATTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTAAGTACCACCCTCTGAACTGTCTTCTGGGGGAGATAATTAGA  800

seq1  GAGGCTTTGGTAAGTCACACAGGACTCTGCTTATACTAGGTACCACCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTGGTAAGTCACACAGGACTCTGCTTATACTAGGTACCACCCTC  850

seq1  AAGCTGTTCCCCTTTGAACAAGTTGACTGGTTT--CTCTGGTCCTCCGTC  898
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  AAGCTGTTCCCCTTTGAACAAGTTGACTGGTTTTCTTCTGGTCCTCCGTC  900

seq1  ATGGAAGCCAGGAAGTAGATACCTGTTGTATGTCCCCCTTCACTGTATAA  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGGAAGCCAGGAAGTAGATACCTGTTGTATGT-CCCCTTCACTGTATAA  949

seq1  C-TTCTTCTGCTTCCTGTTCTTTGTGCTAGTGTCCATTTGAATGCTTTCA  997
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTGC-TCCTGTTCTTTGTGCTAGTGTCCATTTGAATGCTTTCA  998

seq1  TGGGAACCAGATTTAGGCTCTAAGGCTTGGGGCAGGTGGGGCAGAAGGTA  1047
      ||||||||||||||| ||||||| |||| ||||| ||||||||||| |||
seq2  TGGGAACCAGATTTA-GCTCTAA-GCTTTGGGCA-GTGGGGCAGAA-GTA  1044

seq1  GCTGAGGGGTCTGAGTGATGGGTCTGAGAAGAAGGAAGTTAGAG-TCAGC  1096
      ||||| |||||||| |||| ||||||| ||||||  || ||||| |||||
seq2  GCTGA-GGGTCTGA-TGAT-GGTCTGA-AAGAAG--AG-TAGAGTTCAGC  1087

seq1  GGGGAGTA  1104
       |||||||
seq2  -GGGAGTA  1094