BAC Information

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BAC

Clone NameB6Ng01-237C17
Chromosome11 (Build37)
Map Location 102,777,419 - 102,927,123
singlet/doubletdoublet
Overlap gene3000004C01Rik, C1ql1, Dcakd, Nmt1
Upstream geneLOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap
Downstream genePlcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237C17.bB6Ng01-237C17.g
ACCGA048203GA048204
length1,090783
definitionB6Ng01-237C17.b B6Ng01-237C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,777,419 - 102,778,536)(102,926,341 - 102,927,123)
sequence
gaattcaagtgaatgagtggaccccacccccaaagcagagatatcagaag
gcaagccagaaactacccagcaggcagttctcacctgagcagttgtagcc
ctggagaaagctgtcgaggatgttgtgtgtggtgtgctggaacacatcct
cctgagtggccatctcaccaaagacacggtcaaagacaaatgtcaggtct
ttgcccttcttcttggggccattgtgggaaccactccattttaggccagg
aaatcccccatcacactcctcggggtcaaataccagcatccgctcgtcta
ccacctgaatcacaggccgccgctgactctctagctccttaggggtggga
ggcctcacccgcacgaccacccgaaccacgctgtcttccacagccatcac
catggcaacacctgtgcagagagatgaggaccacaccaactctagtgtat
gcttcagtatcaaatggccttccttccaccttcctagtggccgacctccg
ctctattatgtcctccatagagcaagacatcggtagcagaatcaattatt
aatacatatctttctcacttgaaatagcacttctgtcatattcaaatggt
tttgcttccaaaggtcttttactgtactccctatattttccactaagcca
tttggttatagggccagtgaaacggctcagcagataaagttgcttattgc
caagcctaatgacataagtccaaatctcctgaaagtttttgtctgaccca
acacatgctgtgtggcatggccaccttatgagaaataaaatgtaataagc
aatgtatatattcacactccttccatacttttcctatcattaaaacgcac
tttagccaggcagtggtggcacacacctttaatcccagcacttggagaca
gaggcaggcagatttctgagtttgagccagcctgtctacagagtgagttc
taggacagccaggctatacagagaaccctgtctggaaaaaaaaaataacc
cgaaaaacaaaaaaaaccaaaaacaaacaaacaaaacaagaaaaaaaacc
accgacttaatctattagcagactcccctcactgactttt
gaattctcagtggctttatccagaatctcactggcaactggttactgtaa
caccaacccaacctaggagagccaatggggaaaggtcatgttgagttgac
aatacgcaggaactttcctgcctccccaggcgtgtaggtcaggtctactg
agttcagaggaaaatgtctgccatgggagggcagatgccgagcccagacc
tcttaacccagcctttgctgggtttctatttccttcaaggaagaacagtg
gtggcatcctgaagaacactgggccaatggcttccaaggcagctcccggt
cagtgtgtcatagacactgaccggtcccctgaccgaccaccctgcagtgg
ggcgtgaaggggcaagaaagagccacactgagacaggacaggcagcctag
accagggaaggtggatctagagaccctaacctcataggttaacttctgag
tccctcaaaactgcatgcctgatggtgcaggtcttattcccagctaccga
ggaggcagaggcagggggatcttaagttcaaagcctgcttgggctataga
ttgagccagcctgaaagacttagatcctgaatccaaaaagaaaagtctgg
aggcacgcccttcagtctcagaatttgggaggcagggcaggtggatctct
gtgatctgggaacttgaggccaatctttgtctacatggcaagttctaggt
cacaatgtgtgactgtggctggaatttatatatatatatatatatatata
tatatatatatatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102777419_102778536
seq2: B6Ng01-237C17.b_50_1139

seq1  GAATTCAAGTGAATGAGTGGACCCCACCCCCAAAGCAGAGATATCAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGAATGAGTGGACCCCACCCCCAAAGCAGAGATATCAGAAG  50

seq1  GCAAGCCAGAAACTACCCAGCAGGCAGTTCTCACCTGAGCAGTTGTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGAAACTACCCAGCAGGCAGTTCTCACCTGAGCAGTTGTAGCC  100

seq1  CTGGAGAAAGCTGTCGAGGATGTTGTGTGTGGTGTGCTGGAACACATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAAGCTGTCGAGGATGTTGTGTGTGGTGTGCTGGAACACATCCT  150

seq1  CCTGAGTGGCCATCTCACCAAAGACACGGTCAAAGACAAATGTCAGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGGCCATCTCACCAAAGACACGGTCAAAGACAAATGTCAGGTCT  200

seq1  TTGCCCTTCTTCTTGGGGCCATTGTGGGAACCACTCCATTTTAGGCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTTCTTCTTGGGGCCATTGTGGGAACCACTCCATTTTAGGCCAGG  250

seq1  AAATCCCCCATCACACTCCTCGGGGTCAAATACCAGCATCCGCTCGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCCATCACACTCCTCGGGGTCAAATACCAGCATCCGCTCGTCTA  300

seq1  CCACCTGAATCACAGGCCGCCGCTGACTCTCTAGCTCCTTAGGGGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGAATCACAGGCCGCCGCTGACTCTCTAGCTCCTTAGGGGTGGGA  350

seq1  GGCCTCACCCGCACGACCACCCGAACCACGCTGTCTTCCACAGCCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCACCCGCACGACCACCCGAACCACGCTGTCTTCCACAGCCATCAC  400

seq1  CATGGCAACACCTGTGCAGAGAGATGAGGACCACACCAACTCTAGTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAACACCTGTGCAGAGAGATGAGGACCACACCAACTCTAGTGTAT  450

seq1  GCTTCAGTATCAAATGGCCTTCCTTCCACCTTCCTAGTGGCCGACCTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTATCAAATGGCCTTCCTTCCACCTTCCTAGTGGCCGACCTCCG  500

seq1  CTCTATTATGTCCTCCATAGAGCAAGACATCGGTAGCAGAATCAATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTATGTCCTCCATAGAGCAAGACATCGGTAGCAGAATCAATTATT  550

seq1  AATACATATCTTTCTCACTTGAAATAGCACTTCTGTCATATTCAAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATATCTTTCTCACTTGAAATAGCACTTCTGTCATATTCAAATGGT  600

seq1  TTTGCTTCCAAAGGTCTTTTACTGTACTCCCTATATTTTCCACTAAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCCAAAGGTCTTTTACTGTACTCCCTATATTTTCCACTAAGCCA  650

seq1  TTTGGTTATAGGGCCAGTGAAACGGCTCAGCAGATAAAGTTGCTTATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTATAGGGCCAGTGAAACGGCTCAGCAGATAAAGTTGCTTATTGC  700

seq1  CAAGCCTAATGACATAAGTCCAAATCTCCTGAAAGTTTTTGTCTGACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTAATGACATAAGTCCAAATCTCCTGAAAGTTTTTGTCTGACCCA  750

seq1  ACACATGCTGTGTGGCATGGCCACCTTATGAGAAATAAAATGTAATAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCTGTGTGGCATGGCCACCTTATGAGAAATAAAATGTAATAAGC  800

seq1  AATGTATATATTCACACTCCTTCCATACTTTTCCTATCATTAAAACGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATATATTCACACTCCTTCCATACTTTTCCTATCATTAAAACGCAC  850

seq1  TTTAGCCAGGCAGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTAGCCAGGCAGTGGTGGCACACACCTTTAATCCCAGCACTT-GGAGAC  899

seq1  AGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAG  950
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  AGAGGCAGGCAGATTTCTGAGTTTGA-GCCAGCCT-GTCTACAGAGTGAG  947

seq1  TTCTAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTGGAAAAAAAAAA  1000
      |||||||||||||| |||||||||||| ||||||||||||         |
seq2  TTCTAGGACAGCCA-GGCTATACAGAG-AACCCTGTCTGG---------A  986

seq1  AAAAAAAAAAAACCAGAAAAAACAAAAAAAAACCAAAAAACAAAAACAAA  1050
      ||||||||| |||| | |||||||||||||| | |||| | | |||||||
seq2  AAAAAAAAATAACCCG-AAAAACAAAAAAAACCAAAAACAAACAAACAAA  1035

seq1  ACAAAAAACAAAGAAAAAAAAACCAACGGACTTTAAATCTATTAGCAAGA  1100
      ||        |||||||||||  | || |||||  ||||||||||| |||
seq2  AC--------AAGAAAAAAAA--CCACCGACTT--AATCTATTAGC-AGA  1072

seq1  CT-CCCTCACTGGACTTTT  1118
      || |||||||| |||||||
seq2  CTCCCCTCACT-GACTTTT  1090

seq1: chr11_102926341_102927123
seq2: B6Ng01-237C17.g_67_849 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50

seq1  ATATATAAATTCCAGCCACAGTCACACATTGTGACCTAGAACTTGCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAATTCCAGCCACAGTCACACATTGTGACCTAGAACTTGCCATG  100

seq1  TAGACAAAGATTGGCCTCAAGTTCCCAGATCACAGAGATCCACCTGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAAGATTGGCCTCAAGTTCCCAGATCACAGAGATCCACCTGCCCT  150

seq1  GCCTCCCAAATTCTGAGACTGAAGGGCGTGCCTCCAGACTTTTCTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAAATTCTGAGACTGAAGGGCGTGCCTCCAGACTTTTCTTTTTG  200

seq1  GATTCAGGATCTAAGTCTTTCAGGCTGGCTCAATCTATAGCCCAAGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGATCTAAGTCTTTCAGGCTGGCTCAATCTATAGCCCAAGCAGG  250

seq1  CTTTGAACTTAAGATCCCCCTGCCTCTGCCTCCTCGGTAGCTGGGAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACTTAAGATCCCCCTGCCTCTGCCTCCTCGGTAGCTGGGAATAA  300

seq1  GACCTGCACCATCAGGCATGCAGTTTTGAGGGACTCAGAAGTTAACCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCACCATCAGGCATGCAGTTTTGAGGGACTCAGAAGTTAACCTAT  350

seq1  GAGGTTAGGGTCTCTAGATCCACCTTCCCTGGTCTAGGCTGCCTGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAGGGTCTCTAGATCCACCTTCCCTGGTCTAGGCTGCCTGTCCTG  400

seq1  TCTCAGTGTGGCTCTTTCTTGCCCCTTCACGCCCCACTGCAGGGTGGTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTGGCTCTTTCTTGCCCCTTCACGCCCCACTGCAGGGTGGTCG  450

seq1  GTCAGGGGACCGGTCAGTGTCTATGACACACTGACCGGGAGCTGCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGGACCGGTCAGTGTCTATGACACACTGACCGGGAGCTGCCTTGG  500

seq1  AAGCCATTGGCCCAGTGTTCTTCAGGATGCCACCACTGTTCTTCCTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTGGCCCAGTGTTCTTCAGGATGCCACCACTGTTCTTCCTTGAA  550

seq1  GGAAATAGAAACCCAGCAAAGGCTGGGTTAAGAGGTCTGGGCTCGGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGAAACCCAGCAAAGGCTGGGTTAAGAGGTCTGGGCTCGGCATC  600

seq1  TGCCCTCCCATGGCAGACATTTTCCTCTGAACTCAGTAGACCTGACCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCCATGGCAGACATTTTCCTCTGAACTCAGTAGACCTGACCTAC  650

seq1  ACGCCTGGGGAGGCAGGAAAGTTCCTGCGTATTGTCAACTCAACATGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGGGGAGGCAGGAAAGTTCCTGCGTATTGTCAACTCAACATGACC  700

seq1  TTTCCCCATTGGCTCTCCTAGGTTGGGTTGGTGTTACAGTAACCAGTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCATTGGCTCTCCTAGGTTGGGTTGGTGTTACAGTAACCAGTTGC  750

seq1  CAGTGAGATTCTGGATAAAGCCACTGAGAATTC  783
      |||||||||||||||||||||||||||||||||
seq2  CAGTGAGATTCTGGATAAAGCCACTGAGAATTC  783