BAC Information

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BAC

Clone NameB6Ng01-237J19
Chromosome11 (Build37)
Map Location 80,278,261 - 80,406,424
singlet/doubletdoublet
Overlap genePsmd11, Cdk5r1, Myo1d
Upstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726
Downstream geneTmem98, Spaca3, Accn1, 1700071K01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237J19.bB6Ng01-237J19.g
ACCGA048520GA048521
length1,164541
definitionB6Ng01-237J19.b B6Ng01-237J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,405,250 - 80,406,424)(80,278,261 - 80,278,802)
sequence
gaattctcttgctgttcccttgttccttcagaagccagacacacctcaga
cctcaggcactttcgtcccagttgctaatgagctgaaacgcaaggacaag
tatatgaacgttctcttttcctgtcacgtccggaaggtacgtagctcttg
aaccagactatcctggagagagaggactgagaggaaactcaggtgtgggc
ctcagtgaaaaccagcagtgccgtgcagctgggagcagcccagggagccc
ccccccccccatctgtgcttggagcctgactggacaatttagagttgtgt
taataaagcctccctgagggaggaggatagtcttggataacttttttttt
tcatttatgtttctgagacagggtcttataaagtcaaggctggcctcaga
atcactgtagccaagggtaggctggagcgccttcctgtctccctgcctct
gcctctccagcgctgtattcagatgtgtgccactttgcccagctcgatcg
gccttccttttgtaaacagctttggtgtgcccttcaggccatgggtctgt
gttttactacatgcatgtccttcacagcaactacaggtcggctctttatt
gagtggttattatacacaagtatcattgctgcttttaaaactagatttgc
agactggagagatgactcagcgggtaagagcactgactgcccttccaaag
gtcctgagttcaaatcccagcaaccacatggtagctcacaaccacctgta
atgagatctgatgccttcttctggtacgtctgaagatagcttcagtgtat
cacatgatggctcataactatctgtacagctacagtgtactcatatacat
aaaaataaataaataaatctttaaaaaaaagaacaaaaaaaatagatttg
cagagctggagagatggctcagcagttcaagaaccttctgctcttccaga
gaatcggagtttggttcttagcacctgtgtcaggcagttcgcactgttac
tccagctcaggggcatttgatgcctctggcctccaataggacatacatat
gcatatttaaaaaataaatattaaaactacacagaagaaatagaattttt
attgaaagagaagcttattattatctcaacataattcccaatattgaatg
agtcatggcattgc
gaattcttatcctggtttatctttctgggaaacttctatttaagtcattt
cacatttcaaagggaaactggttggcatacagtgatattcaatactgctg
gcttttctacccagtccccttaaaaaagtgatggtgaggacaggctgttt
ataacagaaggtgcttatgagaccttgggtatatgtacacatgcagaaca
gattatgttcatgacatttatttatttgtttgtttgtttgttttttaatt
ctcagacagaagcattgaaatgtgtggctcaagctagcaagaacagatca
ctggcagattttgaaaaggtgagcatggtattgaattgacggggaaccgg
tggagaagagggccattgagggacagtttcagcagtggtgtcattctagc
gcttgggaggcataagcacgcccatccgtgacctcgacgactgccgaaaa
tgctgactgaattccaggggatggtgggcgctcccttgtccaagatccag
tgaccataagtgtgtgggttcaattctggagatgttaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_80405250_80406424
seq2: B6Ng01-237J19.b_44_1207 (reverse)

seq1  GCAATG-CATGATTTCATTC-ATATATGGAATTATGTTGAGATTATTTAA  48
      |||||| |||||  |||||| ||||  |||||||||||||||| |  |||
seq2  GCAATGCCATGA-CTCATTCAATATTGGGAATTATGTTGAGATAA--TAA  47

seq1  TAAGCTTCTTTTTAAATAAAAATTCTTATTTCTTCTGGTTGTAGTTTTTA  98
      ||||||||| ||| ||||||||||| |||||||||||  |||||||||  
seq2  TAAGCTTCTCTTTCAATAAAAATTC-TATTTCTTCTG--TGTAGTTTT--  92

seq1  AATATTTATTTTTAAATTATGCATATGTATGTCCTATTGGAGGCCAGAGG  148
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  AATATTTATTTTTTAAATATGCATATGTATGTCCTATTGGAGGCCAGAGG  142

seq1  CATCAAATGCCCCTGGAGCTGGAGTAACAGGTGGCGAACTGCCTGACACA  198
      |||||||||||||| |||||||||||||||   |||||||||||||||||
seq2  CATCAAATGCCCCT-GAGCTGGAGTAACAG--TGCGAACTGCCTGACACA  189

seq1  GGTGCTAAGAACCAAACTCCGATTCTCTGGAAGAGCAGAAGGTTCTTGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAAGAACCAAACTCCGATTCTCTGGAAGAGCAGAAGGTTCTTGAA  239

seq1  CTGCTGAGCCATCTCTCCAGCTCCTGCAAATCTATTTTTTTTGTTCTTTT  298
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  CTGCTGAGCCATCTCTCCAGCT-CTGCAAATCTATTTTTTTTGTTC-TTT  287

seq1  TTTTTAAAGATTTATTTATTTATTTTTATGTATATGAGTACACTGTAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGATTTATTTATTTATTTTTATGTATATGAGTACACTGTAGCT  337

seq1  GTACAGATAGTTATGAGCCATCATGTGATACACTGAAGCTATCTTCAGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATAGTTATGAGCCATCATGTGATACACTGAAGCTATCTTCAGAC  387

seq1  GTACCAGAAGAAGGCATCAGATCTCATTACAGGTGGTTGTGAGCTACCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGAAGAAGGCATCAGATCTCATTACAGGTGGTTGTGAGCTACCAT  437

seq1  GTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGGGCAGTCAGTGCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGGGCAGTCAGTGCTC  487

seq1  TTACCCGCTGAGTCATCTCTCCAGTCTGCAAATCTAGTTTTAAAAGCAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCGCTGAGTCATCTCTCCAGTCTGCAAATCTAGTTTTAAAAGCAGC  537

seq1  AATGATACTTGTGTATAATAACCACTCAATAAAGAGCCGACCTGTAGTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATACTTGTGTATAATAACCACTCAATAAAGAGCCGACCTGTAGTTG  587

seq1  CTGTGAAGGACATGCATGTAGTAAAACACAGACCCATGGCCTGAAGGGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGGACATGCATGTAGTAAAACACAGACCCATGGCCTGAAGGGCA  637

seq1  CACCAAAGCTGTTTACAAAAGGAAGGCCGATCGAGCTGGGCAAAGTGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGCTGTTTACAAAAGGAAGGCCGATCGAGCTGGGCAAAGTGGCA  687

seq1  CACATCTGAATACAGCGCTGGAGAGGCAGAGGCAGGGAGACAGGAAGGCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGAATACAGCGCTGGAGAGGCAGAGGCAGGGAGACAGGAAGGCG  737

seq1  CTCCAGCCTACCCTTGGCTACAGTGATTCTGAGGCCAGCCTTGACTTTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCTACCCTTGGCTACAGTGATTCTGAGGCCAGCCTTGACTTTAT  787

seq1  AAGACCCTGTCTCAGAAACATAAATGAAAAAAAAAAGTTATCCAAGACTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCTGTCTCAGAAACATAAATGAAAAAAAAAAGTTATCCAAGACTA  837

seq1  TCCTCCTCCCTCAGGGAGGCTTTATTAACACAACTCTAAATTGTCCAGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCCTCAGGGAGGCTTTATTAACACAACTCTAAATTGTCCAGTC  887

seq1  AGGCTCCAAGCACAGATGGGGGGGGGGGGGCTCCCTGGGCTGCTCCCAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAAGCACAGATGGGGGGGGGGGGGCTCCCTGGGCTGCTCCCAGC  937

seq1  TGCACGGCACTGCTGGTTTTCACTGAGGCCCACACCTGAGTTTCCTCTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGCACTGCTGGTTTTCACTGAGGCCCACACCTGAGTTTCCTCTCA  987

seq1  GTCCTCTCTCTCCAGGATAGTCTGGTTCAAGAGCTACGTACCTTCCGGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTCTCTCCAGGATAGTCTGGTTCAAGAGCTACGTACCTTCCGGAC  1037

seq1  GTGACAGGAAAAGAGAACGTTCATATACTTGTCCTTGCGTTTCAGCTCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGGAAAAGAGAACGTTCATATACTTGTCCTTGCGTTTCAGCTCAT  1087

seq1  TAGCAACTGGGACGAAAGTGCCTGAGGTCTGAGGTGTGTCTGGCTTCTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACTGGGACGAAAGTGCCTGAGGTCTGAGGTGTGTCTGGCTTCTGA  1137

seq1  AGGAACAAGGGAACAGCAAGAGAATTC  1175
      |||||||||||||||||||||||||||
seq2  AGGAACAAGGGAACAGCAAGAGAATTC  1164

seq1: chr11_80278261_80278802
seq2: B6Ng01-237J19.g_64_604

seq1  GAATTCTTATCCTGGTTTATCTTTCTGGGAAACTTCTATTTAAGTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCCTGGTTTATCTTTCTGGGAAACTTCTATTTAAGTCATTT  50

seq1  CACATTTCAAAGGGAAACTGGTTGGCATACAGTGATATTCAATACTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCAAAGGGAAACTGGTTGGCATACAGTGATATTCAATACTGCTG  100

seq1  GCTTTTCTACCCAGTCCCCTTAAAAAAGTGATGGTGAGGACAGGCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTACCCAGTCCCCTTAAAAAAGTGATGGTGAGGACAGGCTGTTT  150

seq1  ATAACAGAAGGTGCTTATGAGACCTTGGGTATATGTACACATGCAGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAAGGTGCTTATGAGACCTTGGGTATATGTACACATGCAGAACA  200

seq1  GATTATGTTCATGACATTTATTTATTTGTTTGTTTGTTTGTTTTTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGTTCATGACATTTATTTATTTGTTTGTTTGTTTGTTTTTTAATT  250

seq1  CTCAGACAGAAGCATTGAAATGTGTGGCTCAAGCTAGCAAGAACAGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAGAAGCATTGAAATGTGTGGCTCAAGCTAGCAAGAACAGATCA  300

seq1  CTGGCAGATTTTGAAAAGGTGAGCATGGTATTGAATTGACGGGGAACCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGATTTTGAAAAGGTGAGCATGGTATTGAATTGACGGGGAACCGG  350

seq1  TGGAGAAGAGGGCCATTGAGGGACAGTTTCAGCAGTGGTGTCATTCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGAGGGCCATTGAGGGACAGTTTCAGCAGTGGTGTCATTCTAGC  400

seq1  GCTTGGGAGGCAGAGGCAGGCAGATCCCTGAGCTCGAGGCCAGCCTGGTC  450
      |||||||||||| | ||| ||  |||| ||| ||||| | | |||     
seq2  GCTTGGGAGGCATAAGCACGCCCATCCGTGACCTCGACGACTGCCGAAAA  450

seq1  TACAGAGTGAATTCCAGGGCAGCCAGGGCTACACAGAGAAACCCTGCCTT  500
      | | || |||||||||||| |    |||             | || ||||
seq2  TGCTGACTGAATTCCAGGGGATGGTGGG-------------CGCTCCCTT  487

seq1  AAAAAACAAACA-AAACCA-----------CTTCAAAGTTAGAGATGTTA  538
          || |  ||   ||||            |||||   | |||||||||
seq2  GTCCAAGATCCAGTGACCATAAGTGTGTGGGTTCAATTCTGGAGATGTTA  537

seq1  ATGT  542
      ||||
seq2  ATGT  541