BAC Information

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BAC

Clone NameB6Ng01-238P14
Chromosome11 (Build37)
Map Location 70,602,812 - 70,761,666
singlet/doubletdoublet
Overlap geneA430084P05Rik, Rabep1, LOC668461, Nup88
Upstream geneChrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3
Downstream geneRpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238P14.bB6Ng01-238P14.g
ACCGA049526GA049527
length1,090919
definitionB6Ng01-238P14.b B6Ng01-238P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,760,583 - 70,761,666)(70,602,812 - 70,603,730)
sequence
gaattcttgtggcaggtattgggtcactgggtatgtaagattccaaagct
ctcttcatttaggtctctgagcagcttgtagacactgaactaggctcact
gagatagatgggccttagatgttactggggagaaaaacatataagctgtg
tatccctagataattggtaaatagcttgtagattgctactaagtgggagc
tttgtttaaactgatcaaggtatgtttccaaataaccatgtttggggtgg
ttactgcattgacagtcaggatgtcacaggccccaaaaggcctggaccag
tcatatagttgctattggttctggttaactgctgctttgtaactttgtaa
cctctttgcaggcagccagctccaattcgaggattctggatcgtcccaga
catcctggggcccacaatgatctgcatcaccagtacctatgaatgtctca
tacggcctttattgtaagtcccattctgtatctgccacataactctctaa
ttctgccaaatcaacgctggagagaatgcccttagtaactagtttgaggc
tgtgtggtttaagttttggcttctgaattcagtcaatatttctgttttct
ttactatctctgaaaaagtttcattttagacatcatgggattttttttgg
ctcgtaattgagaatcatagcttttctgttctgttttgagatagggtctc
agcctgcagtcctgctggcctagaacaggctttacctcatctgagattac
tactgtgattttctacacccagctagagattttctcccaagtacagagga
ttgagacactggactacatttgttgtgattggatttagttgactgttgca
tgtcagctcagtataagatattctcctgtatgtcctcctggacacattta
gagaagcccccagggaatcttctaatctccatgttatagaaaaagggctt
aaacaagtcaagggttgcacatacattatagctctggtgcacatgaggtt
cttgcgtggttccctctctcttgtcagcctcagagggacattgcactttg
taacctctgaggaaacagtataagcctgaatttatgtatt
attcattcattcattcatccattcattcattcgatcattgagcatactta
ctgaccatcctcagcatgctaggaacagggaaaacaaggaagaagagaag
gcctgtctctgcactggtgttgcctttgttcaactggaaatgaaagtcac
atgagcagatcgttccggatataagagttatgaaggggaagcacctacaa
aggccaccaccacatcgggccggtgaggaaagcacagtgcctaagatgca
aaggaggggaggaatattgcgtatagcagggacaagagagaccacagcaa
aggtacttacaagtagaggaaaaacactggggaacatggaggttgccagg
aggaggtagtgtgtgaaaagttagccagtaataaaatcctgacaaatctt
gtaagccatatttaagagtttggcctctgtctgaggctaataggtaaaga
tgagcttttagcaatgggaagaagtattcggttgctcactttcaaaaatc
accagctgccaatcagtgttttggagtctgaaataccagaggcaggacac
tggttagaggttcttaaagttctctttgggaagtgctggccatgggctga
ctgacctcagagtgatggagacagagctgatctgactgaggcacagtcaa
caggaggtggggacactggcaataaaggatgcaagaaaggacctaacttc
tgcccttagcaagggaggaagtaatctagcacgagaagtcaggggtgggg
atgtgtcatcagttatccatggaatatgttgaatttgaggatcccgtggg
ataatcagatggaggtgtcctgcgggctctgcacctggaactggaaaaga
gggttgaactgggagcctgtggttgggaagttgctaggttaaaggggatt
gctgagccctgtgttattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70760583_70761666
seq2: B6Ng01-238P14.b_46_1135 (reverse)

seq1  AATACATAAACTCAGCTTTATACTGTTTCCTCAGAGTTTACATAGTGCAA  50
      |||||||||| ||||  ||||||||||||||||||| ||||| |||||||
seq2  AATACATAAATTCAGGCTTATACTGTTTCCTCAGAGGTTACAAAGTGCAA  50

seq1  TGTCCCTCTGAGGCTGGC-AGAGAGAGGG-ACCACGC-AGACCCTCATGT  97
      |||||||||||||||| | |||||||||| ||||||| ||| ||||||||
seq2  TGTCCCTCTGAGGCTGACAAGAGAGAGGGAACCACGCAAGAACCTCATGT  100

seq1  GCACCAGAGCTAT-ATGTATGTGCAACCCTTGACTTGTTTAAG-CCTTTT  145
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GCACCAGAGCTATAATGTATGTGCAACCCTTGACTTGTTTAAGCCCTTTT  150

seq1  TCTATTACATGGAGATTAGAAGATT-CCTTGGGGCTTCTCT-AATGTGTC  193
      ||||| ||||||||||||||||||| ||| ||||||||||| ||||||||
seq2  TCTATAACATGGAGATTAGAAGATTCCCTGGGGGCTTCTCTAAATGTGTC  200

seq1  CAGGAGGACATACAGGAGAATATCTTATACCTGAGCCTGACATGCAACAG  243
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  CAGGAGGACATACAGGAGAATATCTTATA-CTGAG-CTGACATGCAACAG  248

seq1  TCAACTAAATCCAATCACAAC-AATGTAGTCCAGTGTCTCAATCCTCTGT  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAACTAAATCCAATCACAACAAATGTAGTCCAGTGTCTCAATCCTCTGT  298

seq1  ACTTGGGAGAAAATCTCTAGCTGGGTGTAGAAAATCACAGTAGTAATCTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGAAAATCTCTAGCTGGGTGTAGAAAATCACAGTAGTAATCTC  348

seq1  AGATGAGGTAAAGCCTGTTCTAGGCCAGCAGGACTGCAGGCTGAGACCCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGTAAAGCCTGTTCTAGGCCAGCAGGACTGCAGGCTGAGACCCT  398

seq1  ATCTCAAAACAGAACAGAAAAGCTATGATTCTCAATTACGAGCCAAAAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAACAGAACAGAAAAGCTATGATTCTCAATTACGAGCCAAAAAA  448

seq1  AATCCCATGATGTCTAAAATGAAACTTTTTCAGAGATAGTAAAGAAAACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATGATGTCTAAAATGAAACTTTTTCAGAGATAGTAAAGAAAACA  498

seq1  GAAATATTGACTGAATTCAGAAGCCAAAACTTAAACCACACAGCCTCAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTGACTGAATTCAGAAGCCAAAACTTAAACCACACAGCCTCAAA  548

seq1  CTAGTTACTAAGGGCATTCTCTCCAGCGTTGATTTGGCAGAATTAGAGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTACTAAGGGCATTCTCTCCAGCGTTGATTTGGCAGAATTAGAGAG  598

seq1  TTATGTGGCAGATACAGAATGGGACTTACAATAAAGGCCGTATGAGACAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGCAGATACAGAATGGGACTTACAATAAAGGCCGTATGAGACAT  648

seq1  TCATAGGTACTGGTGATGCAGATCATTGTGGGCCCCAGGATGTCTGGGAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGTACTGGTGATGCAGATCATTGTGGGCCCCAGGATGTCTGGGAC  698

seq1  GATCCAGAATCCTCGAATTGGAGCTGGCTGCCTGCAAAGAGGTTACAAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGAATCCTCGAATTGGAGCTGGCTGCCTGCAAAGAGGTTACAAAG  748

seq1  TTACAAAGCAGCAGTTAACCAGAACCAATAGCAACTATATGACTGGTCCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGCAGCAGTTAACCAGAACCAATAGCAACTATATGACTGGTCCA  798

seq1  GGCCTTTTGGGGCCTGTGACATCCTGACTGTCAATGCAGTAACCACCCCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTGGGGCCTGTGACATCCTGACTGTCAATGCAGTAACCACCCCA  848

seq1  AACATGGTTATTTGGAAACATACCTTGATCAGTTTAAACAAAGCTCCCAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTTATTTGGAAACATACCTTGATCAGTTTAAACAAAGCTCCCAC  898

seq1  TTAGTAGCAATCTACAAGCTATTTACCAATTATCTAGGGATACACAGCTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGCAATCTACAAGCTATTTACCAATTATCTAGGGATACACAGCTT  948

seq1  ATATGTTTTTCTCCCCAGTAACATCTAAGGCCCATCTATCTCAGTGAGCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTTCTCCCCAGTAACATCTAAGGCCCATCTATCTCAGTGAGCC  998

seq1  TAGTTCAGTGTCTACAAGCTGCTCAGAGACCTAAATGAAGAGAGCTTTGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGTGTCTACAAGCTGCTCAGAGACCTAAATGAAGAGAGCTTTGG  1048

seq1  AATCTTACATACCCAGTGACCCAATACCTGCCACAAGAATTC  1084
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTACATACCCAGTGACCCAATACCTGCCACAAGAATTC  1090

seq1: chr11_70602812_70603730
seq2: B6Ng01-238P14.g_71_989

seq1  ATTCATTCATTCATTCATCCATTCATTCATTCGATCATTGAGCATACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCATTCATTCATCCATTCATTCATTCGATCATTGAGCATACTTA  50

seq1  CTGACCATCCTCAGCATGCTAGGAACAGGGAAAACAAGGAAGAAGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATCCTCAGCATGCTAGGAACAGGGAAAACAAGGAAGAAGAGAAG  100

seq1  GCCTGTCTCTGCACTGGTGTTGCCTTTGTTCAACTGGAAATGAAAGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTCTGCACTGGTGTTGCCTTTGTTCAACTGGAAATGAAAGTCAC  150

seq1  ATGAGCAGATCGTTCCGGATATAAGAGTTATGAAGGGGAAGCACCTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGATCGTTCCGGATATAAGAGTTATGAAGGGGAAGCACCTACAA  200

seq1  AGGCCACCACCACATCGGGCCGGTGAGGAAAGCACAGTGCCTAAGATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACCACCACATCGGGCCGGTGAGGAAAGCACAGTGCCTAAGATGCA  250

seq1  AAGGAGGGGAGGAATATTGCGTATAGCAGGGACAAGAGAGACCACAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGGAGGAATATTGCGTATAGCAGGGACAAGAGAGACCACAGCAA  300

seq1  AGGTACTTACAAGTAGAGGAAAAACACTGGGGAACATGGAGGTTGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTACAAGTAGAGGAAAAACACTGGGGAACATGGAGGTTGCCAGG  350

seq1  AGGAGGTAGTGTGTGAAAAGTTAGCCAGTAATAAAATCCTGACAAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTAGTGTGTGAAAAGTTAGCCAGTAATAAAATCCTGACAAATCTT  400

seq1  GTAAGCCATATTTAAGAGTTTGGCCTCTGTCTGAGGCTAATAGGTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCATATTTAAGAGTTTGGCCTCTGTCTGAGGCTAATAGGTAAAGA  450

seq1  TGAGCTTTTAGCAATGGGAAGAAGTATTCGGTTGCTCACTTTCAAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTTAGCAATGGGAAGAAGTATTCGGTTGCTCACTTTCAAAAATC  500

seq1  ACCAGCTGCCAATCAGTGTTTTGGAGTCTGAAATACCAGAGGCAGGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGCCAATCAGTGTTTTGGAGTCTGAAATACCAGAGGCAGGACAC  550

seq1  TGGTTAGAGGTTCTTAAAGTTCTCTTTGGGAAGTGCTGGCCATGGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGAGGTTCTTAAAGTTCTCTTTGGGAAGTGCTGGCCATGGGCTGA  600

seq1  CTGACCTCAGAGTGATGGAGACAGAGCTGATCTGACTGAGGCACAGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCAGAGTGATGGAGACAGAGCTGATCTGACTGAGGCACAGTCAA  650

seq1  CAGGAGGTGGGGACACTGGCAATAAAGGATGCAAGAAAGGACCTAACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTGGGGACACTGGCAATAAAGGATGCAAGAAAGGACCTAACTTC  700

seq1  TGCCCTTAGCAAGGGAGGAAGTAATCTAGCACGAGAAGTCAGGGGTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTAGCAAGGGAGGAAGTAATCTAGCACGAGAAGTCAGGGGTGGGG  750

seq1  ATGTGTCATCAGTTATCCATGGAATATGTTGAATTTGAGGATCCCGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATCAGTTATCCATGGAATATGTTGAATTTGAGGATCCCGTGGG  800

seq1  ATAATCAGATGGAGGTGTCCTGCGGGCTCTGCAACCTGGAACTGGAAAAG  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATAATCAGATGGAGGTGTCCTGCGGGCTCTGC-ACCTGGAACTGGAAAAG  849

seq1  AGGGGTTGAACT-GGAGCCTGTGGTTGGGAAGTTGCTAGGGTAAAGGGGA  899
      | |||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  A-GGGTTGAACTGGGAGCCTGTGGTTGGGAAGTTGCTAGGTTAAAGGGGA  898

seq1  -TGCTGAGCCCTGTGGTATTG  919
       |||||||||||||| |||||
seq2  TTGCTGAGCCCTGTGTTATTG  919