BAC Information

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BAC

Clone NameB6Ng01-239O08
Chromosome11 (Build37)
Map Location 70,399,287 - 70,581,991
singlet/doubletdoublet
Overlap geneMink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3
Upstream geneTrp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2
Downstream geneA430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239O08.bB6Ng01-239O08.g
ACCGA050201GA050202
length1,1641,003
definitionB6Ng01-239O08.b B6Ng01-239O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,399,287 - 70,400,415)(70,581,005 - 70,581,991)
sequence
gaattcctctagattttatgtttccagatctttctaccatgctagcagct
tctctggatttagtaatgaacccttacagacaagaatttctataattata
agactcctggatcagcaaacaggctgatgtagcatcctatcctatcctat
cctgtccttccctgcacttgcttcccaagccctcttagcctttacaatga
atgtatcacctggagctagccctcaggctacgttatacagtttcccagag
ggagaaaaaaaagtatgtgattttgtttaacaaggtctcacatagcccag
gctgaccttgaatgcatatagccagtgatgggcttgaactcatggtcttc
ctgtctctgcctcccagtgctggaactgtgggagtagaccaccgtaccca
actcatacatagagttttactgtccatccattgtcccaaccccaccctgg
cccccttttgagtaggggctaactttgtagatcaagctggccttgaactt
agattgttgttgcttgtgtctacctccctagcgctgggattcaaggtata
caacaacatacatggccatatgtggaaatgctaacgtatgagaggaatga
gatgatagatgcttagtcatagaagcactagtaagaggatgggagaggca
gccagagcctgactgtatgtgctcactgtacagcaaagtagttttgcata
tgccacaaattcagagctgaagggaaggcattgctgtttcattctggcac
aagtctggccagccctcattctgtgtataacacctaagtgctgtcttcat
cctgtccttaaatggctcctgttctactggggaggaggaaacgttaatcc
ttgtgtaaggtagaatagcaattgtgcttgtccagcttgttttgggttgt
aagagcttactcagggtagttcacatataaagggatggcctggttcttgg
aagcagcttgcatgcctttatacccttaaatccctgcctccactactaac
cgggtctgccatcccttgaaccatgtttacacacctcatgttatgtggaa
caaaacctttttaacttaaccctctgataaggtagtctcaacaaacggac
caaaggtacatgaatatctacctaaggtcccaccttggggaaccaatgag
tttttatttggggt

gaattccataacacctagtatgtgatatcaaagtgtaaagaagagcgagt
ggactggagagatggctcagtgcctaagaacactggctgctgttcctgca
atgggcccagactcagttcccagcaccgcaggatgcttcacagctatcta
taactatctataactccagttccgaggtgtctgatgtcctcttctggttt
ccttgggcaccgtcaggtacccgacacacatatatgtattcgggcaacca
ctcatagttgtaaaacattttttttaattaaaaaaaaaaaaaaaaacgcg
gggtggtggtggcgcatgcctttaatcccagcacttgggaggcagaggca
ggtggatttctgagtttgaggccagcctggtctacagagtgagttccagg
acagcctgggctatatagagaacgtgatctctactggaaccctgaagcct
aggaagctctttgttatctccctcaaagtgggccagaagcccccagcgtc
ttctcatgctttcccatggagcaaggaaagaccccaaaactagacttctc
ctttttttttttggtcaaaatctatgtaactctaaggatatattatggag
ttgtgactatctggttttggaacaatgtaagtctggctggcctagaactc
acaagatggcttcaattttacagagatctcctgtttctgcctcccgagca
ctggggctaaaggcacaccccaccatgccgaactggtgactatcttctct
atctatggcatcgttttcctttgggaagcactgtcacaaaattcctttac
agtcttcttttaatctcagcaacttaagaggcagaaggatcatgaattgg
aagccagtctggatttgcatacaggatgctgtgtaaaataaaaaataaaa
aagaatttattttctgcaagcaaatgtctcctcaaataccccacccaaga
aacagtttttcaggagcaggtatttcagcattctatgtactttcccacct
ccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70399287_70400415
seq2: B6Ng01-239O08.b_44_1207

seq1  GAATTCCTCTAGATTTTATGTTTCCAGATCTTTCTACCATGCTAGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTAGATTTTATGTTTCCAGATCTTTCTACCATGCTAGCAGCT  50

seq1  TCTCTGGATTTAGTAATGAACCCTTACAGACAAGAATTTCTATAATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGATTTAGTAATGAACCCTTACAGACAAGAATTTCTATAATTATA  100

seq1  AGACTCCTGGATCAGCAAACAGGCTGATGTAGCATCCTATCCTATCCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTGGATCAGCAAACAGGCTGATGTAGCATCCTATCCTATCCTAT  150

seq1  CCTGTCCTTCCCTGCACTTGCTTCCCAAGCCCTCTTAGCCTTTACAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTTCCCTGCACTTGCTTCCCAAGCCCTCTTAGCCTTTACAATGA  200

seq1  ATGTATCACCTGGAGCTAGCCCTCAGGCTACGTTATACAGTTTCCCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCACCTGGAGCTAGCCCTCAGGCTACGTTATACAGTTTCCCAGAG  250

seq1  GGAGAAAAAAAAGTATGTGATTTTGTTTAACAAGGTCTCACATAGCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAAAAAGTATGTGATTTTGTTTAACAAGGTCTCACATAGCCCAG  300

seq1  GCTGACCTTGAATGCATATAGCCAGTGATGGGCTTGAACTCATGGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTTGAATGCATATAGCCAGTGATGGGCTTGAACTCATGGTCTTC  350

seq1  CTGTCTCTGCCTCCCAGTGCTGGAACTGTGGGAGTAGACCACCGTACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGCCTCCCAGTGCTGGAACTGTGGGAGTAGACCACCGTACCCA  400

seq1  ACTCATACATAGAGTTTTACTGTCCATCCATTGTCCCAACCCCACCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACATAGAGTTTTACTGTCCATCCATTGTCCCAACCCCACCCTGG  450

seq1  CCCCCTTTTGAGTAGGGGCTAACTTTGTAGATCAAGCTGGCCTTGAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTTGAGTAGGGGCTAACTTTGTAGATCAAGCTGGCCTTGAACTT  500

seq1  AGATTGTTGTTGCTTGTGTCTACCTCCCTAGCGCTGGGATTCAAGGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTGTTGCTTGTGTCTACCTCCCTAGCGCTGGGATTCAAGGTATA  550

seq1  CAACAACATACATGGCCATATGTGGAAATGCTAACGTATGAGAGGAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACATACATGGCCATATGTGGAAATGCTAACGTATGAGAGGAATGA  600

seq1  GATGATAGATGCTTAGTCATAGAAGCACTAGTAAGAGGATGGGAGAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAGATGCTTAGTCATAGAAGCACTAGTAAGAGGATGGGAGAGGCA  650

seq1  GCCAGAGCCTGACTGTATGTGCTCACTGTACAGCAAAGTAGTTTTGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCCTGACTGTATGTGCTCACTGTACAGCAAAGTAGTTTTGCATA  700

seq1  TGCCACAAATTCAGAGCTGAAGGGAAGGCATTGCTGTTTCATTCTGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAAATTCAGAGCTGAAGGGAAGGCATTGCTGTTTCATTCTGGCAC  750

seq1  AAGTCTGGCCAGCCCTCATTCTGTGTATAACACCTAAGTGCTGTCTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGCCAGCCCTCATTCTGTGTATAACACCTAAGTGCTGTCTTCAT  800

seq1  CCTGTCCTTAAATGGCTCCTGTTCTACTGGGGAGGAGGAAACG-TAATCC  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTGTCCTTAAATGGCTCCTGTTCTACTGGGGAGGAGGAAACGTTAATCC  850

seq1  -TGTGTAAGGTAGAATAGCAA-TGTGC-TGTCCAGCTTGTTT--GGTTGT  894
       |||||||||||||||||||| ||||| ||||||||||||||  ||||||
seq2  TTGTGTAAGGTAGAATAGCAATTGTGCTTGTCCAGCTTGTTTTGGGTTGT  900

seq1  AAGAGCTTACTCAGGGTAGGTCAC--ATAAAGGGATGG-CTGGTTC-TGG  940
      ||||||||||||||||||| ||||  |||||||||||| ||||||| |||
seq2  AAGAGCTTACTCAGGGTAGTTCACATATAAAGGGATGGCCTGGTTCTTGG  950

seq1  AAGCAGC-TGCATGCCTTTATA-CCTTAAAT-CCTGCCTCCACTACTTAA  987
      ||||||| |||||||||||||| |||||||| ||||||||||||||| | 
seq2  AAGCAGCTTGCATGCCTTTATACCCTTAAATCCCTGCCTCCACTACTAAC  1000

seq1  CGGG-CTGCCA-GCCTTG-AGCATG-TTACACACCTCATGTTATGTG--A  1031
      |||| ||||||  ||||| | |||| |||||||||||||||||||||  |
seq2  CGGGTCTGCCATCCCTTGAACCATGTTTACACACCTCATGTTATGTGGAA  1050

seq1  CAAAAC--TTTTAA-TTTACCCTC-GAT-AGGGAGTC-CA--CAACAGAC  1073
      ||||||  |||||| || |||||| ||| ||| |||| ||   ||| |||
seq2  CAAAACCTTTTTAACTTAACCCTCTGATAAGGTAGTCTCAACAAACGGAC  1100

seq1  CAAA-GTACA--GATA-CCACCAAAG--TCCAACTTGGTGAACCAATGAG  1117
      |||| |||||   ||| | ||| |||   ||| ||||| |||||||||||
seq2  CAAAGGTACATGAATATCTACCTAAGGTCCCACCTTGGGGAACCAATGAG  1150

seq1  TTTT--ATTGGGGT  1129
      ||||   |||||||
seq2  TTTTTATTTGGGGT  1164


seq1: chr11_70581005_70581991
seq2: B6Ng01-239O08.g_66_1068 (reverse)

seq1  GGGAGGTGGG-AAGTACATAG-ATGCTGAAATACCTGCTCCTG-AAAACT  47
      |||||||||| |||||||||| ||||||||||||||||||||| ||||||
seq2  GGGAGGTGGGAAAGTACATAGAATGCTGAAATACCTGCTCCTGAAAAACT  50

seq1  G-TTCTT-GGTTGGGTATTTG-GGAGACATTTGCTTGCAGAAA--TAATT  92
      | ||||| ||| ||||||||| |||||||||||||||||||||   ||||
seq2  GTTTCTTGGGTGGGGTATTTGAGGAGACATTTGCTTGCAGAAAATAAATT  100

seq1  CTTTTTTA-TTTTTATTTTACACAGCATCCTGTATGC-AATCCAGACTGG  140
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  CTTTTTTATTTTTTATTTTACACAGCATCCTGTATGCAAATCCAGACTGG  150

seq1  CTT-CAATTCATGATCCTTCTGCCTCTTAAG-TGCTGAGATTAAA--GAG  186
      ||| ||||||||||||||||||||||||||| |||||||||||||   ||
seq2  CTTCCAATTCATGATCCTTCTGCCTCTTAAGTTGCTGAGATTAAAAGAAG  200

seq1  ACTGTAAAGGAA-TTTGTGACAGTGCTTCCCAAAGG-AAACGATGCCATA  234
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  ACTGTAAAGGAATTTTGTGACAGTGCTTCCCAAAGGAAAACGATGCCATA  250

seq1  GATAGAGAAGATAGTCACCAGTTCGGCATGGTGGGGTGTGCCTTTAGCCC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAAGATAGTCACCAGTTCGGCATGGTGGGGTGTGCCTTTAGCCC  300

seq1  CAGTGCTCGGGAGGCAGAAACAGGAGATCTCTGTAAAATTGAAGCCATCT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCGGGAGGCAGAAACAGGAGATCTCTGTAAAATTGAAGCCATCT  350

seq1  TGTGAGTTCTAGGCCAGCCAGACTTACATTGTTCCAAAACCAGATAGTCA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCTAGGCCAGCCAGACTTACATTGTTCCAAAACCAGATAGTCA  400

seq1  CAACTCCATAATATATCCTTAGAGTTACATAGATTTTGACCAAAAAAAAA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCATAATATATCCTTAGAGTTACATAGATTTTGACCAAAAAAAAA  450

seq1  AAGGAGAAGTCTAGTTTTGGGGTCTTTCCTTGCTCCATGGGAAAGCATGA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGTCTAGTTTTGGGGTCTTTCCTTGCTCCATGGGAAAGCATGA  500

seq1  GAAGACGCTGGGGGCTTCTGGCCCACTTTGAGGGAGATAACAAAGAGCTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACGCTGGGGGCTTCTGGCCCACTTTGAGGGAGATAACAAAGAGCTT  550

seq1  CCTAGGCTTCAGGGTTCCAGTAGAGATCACGTTCTCTATATAGCCCAGGC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTTCAGGGTTCCAGTAGAGATCACGTTCTCTATATAGCCCAGGC  600

seq1  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCC  650

seq1  ACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACCA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACCA  700

seq1  CCCCGCGTTTTTTTTTTTTTTTTTAATTAAAAAAAATGTTTTACAACTAT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCGTTTTTTTTTTTTTTTTTAATTAAAAAAAATGTTTTACAACTAT  750

seq1  GAGTGGTTGCCCGAATACATATATGTGTGTCGGGTACCTGACGGTGCCCA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTGCCCGAATACATATATGTGTGTCGGGTACCTGACGGTGCCCA  800

seq1  AGGAAACCAGAAGAGGACATCAGACACCTCGGAACTGGAGTTATAGATAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCAGAAGAGGACATCAGACACCTCGGAACTGGAGTTATAGATAG  850

seq1  TTATAGATAGCTGTGAAGCATCCTGCGGTGCTGGGAACTGAGTCTGGGCC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATAGCTGTGAAGCATCCTGCGGTGCTGGGAACTGAGTCTGGGCC  900

seq1  CATTGCAGGAACAGCAGCCAGTGTTCTTAGGCACTGAGCCATCTCTCCAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGGAACAGCAGCCAGTGTTCTTAGGCACTGAGCCATCTCTCCAG  950

seq1  TCCACTCGCTCTTCTTTACACTTTGATATCACATACTAGGTGTTATGGAA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCGCTCTTCTTTACACTTTGATATCACATACTAGGTGTTATGGAA  1000

seq1  TTC  987
      |||
seq2  TTC  1003


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