BAC Information

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BAC

Clone NameB6Ng01-240J16
Chromosome11 (Build37)
Map Location 57,856,524 - 57,857,587
singlet/doubletsinglet
Overlap geneLarp1
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605
Downstream geneLOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240J16.bB6Ng01-240J16.g
ACCGA050732GA050733
length1,1141,067
definitionB6Ng01-240J16.b B6Ng01-240J16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtaatctgattgcctctgcctctgaatactgactgggattaaa
aatgtatgccactacacccagcttttctcatgtgggttctggggagtgaa
ctcaggtcctcgtgtactctgttaactgaatcatctccccaacctggata
aacttattgtttataatcaaattatgaaatttggaatgatatttaccagt
aactacccacatgggaaatacctgtgacccatcaactccagcagacacgt
caaatcaaacttcccaaataacctaatgattctggcgttttgcttgtttg
gtttttagattgatttgtatgtatgtgtgttttgcccacatgtatatcta
cataatatacataatgacactaatataagaattcagattattctgcaaac
gggttggctgaatcctcaccatgagatcaagcattgtgagcctctcggtt
gcaatgagaattgggtgaggtgaccgagtgggctgtattgaagatacatg
actcccttgctattcctaggtaacaggcctgtgtagtgggtttgccctaa
tgctgcttgtactctaatgttaatttgggtccccaaaactgcttacaggt
ttctaggaacttgcccccaattggttctgactggtaaataaaaattccat
cagccagtagctgggaagacatacagaggtgggtttttggaatttcccag
gcttgggatcaggagagaggaagaagaagggagagtgtcgaggaaaggag
agacgacatgtcagagaaaagtacagggcgagagaggtatggatgccatg
tgaaggaaccaggagagtgcagcccagaccagtgggtccagagcacaaaa
cagaacacagaattcttgaaattctctgttacaaggtagattccatcagt
agtggaggtcaggcagtggcccagctattgtgctgagttaggcacatacc
aatacaacaaaggttatgtgttgtgtctttcattctctggaactataacc
gccaggaattattcaatttatattttcaacaggccttccttcacaattgc
caccatacaggattgttgggaaccagaatttgctgaaacttaaatctggt
tcttcttaagaatc
gaattctgttcattaccacttaggaaagtagagactaccactaacaggca
agcaccctggctcccttctgtgttcccatggtcacgaagcagcgtgtcag
cagcatggtgaatgctgtcaagcatctcctttaaccatcactgtagccag
gctttttcctgtttgtaggccttgttcttatctcatgactgttgcaggcc
tgacatagatgacttggatttcctgtccctattttataggagaacaagca
gtccagtaattcatccaaagtcaccgctagtgagtcacaaagcacaggct
taatgctgtttctgtctggctattattttttgctcttattcatactgaag
tgctggctcgcagaccaaaggagaacccatataaagaagcaggtagtaga
gtaagagggttagtgttttagtagcagaatagtgttggacctgagtttca
aaagaggattagtttgttgggctcacctgtgatagctgaaagactgggtg
atttgactcaaagcaatagtacatcatttcttttcagcctttaagccagt
gattttcaaactttctaatgctgggactctttaatacagttcttccttgt
gttatggtgacctccaaccataaaattattcttgttgctactttataact
gtagttttgctactgttatgaatcataatgtaaatatttatgttctctag
tggtcttaggtgacccgtgtgtaagggacacaccccaggtgtcacaaccc
acaggttgaaagacagctgccttaagctgtccagcaggagaagagtgaag
tcaggaatgtgaggttgtggggacggagagggagcaggaaaggcccatag
cccctcagtgatgcctttttttcccctccacttagtgaatattacttcag
cgtggacaatttagagcgagaacttcttcctgagacggaaaatggatgct
gatggcttccttcccaatcaccctattgcttccttcaccgtgtaccaggc
cctaaccactgacatttcacctcatctttgcggtatgtctcttcctggga
tgatggtggggaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57856524_57857587
seq2: B6Ng01-240J16.g_67_1133

seq1  GAATTCTGTTCATTACCACTTAGGAAAGTAGAGACTACCACTAACAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCATTACCACTTAGGAAAGTAGAGACTACCACTAACAGGCA  50

seq1  AGCACCCTGGCTCCCTTCTGTGTTCCCATGGTCACGAAGCAGCGTGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCTGGCTCCCTTCTGTGTTCCCATGGTCACGAAGCAGCGTGTCAG  100

seq1  CAGCATGGTGAATGCTGTCAAGCATCTCCTTTAACCATCACTGTAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGTGAATGCTGTCAAGCATCTCCTTTAACCATCACTGTAGCCAG  150

seq1  GCTTTTTCCTGTTTGTAGGCCTTGTTCTTATCTCATGACTGTTGCAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCCTGTTTGTAGGCCTTGTTCTTATCTCATGACTGTTGCAGGCC  200

seq1  TGACATAGATGACTTGGATTTCCTGTCCCTATTTTATAGGAGAACAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGATGACTTGGATTTCCTGTCCCTATTTTATAGGAGAACAAGCA  250

seq1  GTCCAGTAATTCATCCAAAGTCACCGCTAGTGAGTCACAAAGCACAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTAATTCATCCAAAGTCACCGCTAGTGAGTCACAAAGCACAGGCT  300

seq1  TAATGCTGTTTCTGTCTGGCTATTATTTTTTGCTCTTATTCATACTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGTTTCTGTCTGGCTATTATTTTTTGCTCTTATTCATACTGAAG  350

seq1  TGCTGGCTCGCAGACCAAAGGAGAACCCATATAAAGAAGCAGGTAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTCGCAGACCAAAGGAGAACCCATATAAAGAAGCAGGTAGTAGA  400

seq1  GTAAGAGGGTTAGTGTTTTAGTAGCAGAATAGTGTTGGACCTGAGTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGGGTTAGTGTTTTAGTAGCAGAATAGTGTTGGACCTGAGTTTCA  450

seq1  AAAGAGGATTAGTTTGTTGGGCTCACCTGTGATAGCTGAAAGACTGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGATTAGTTTGTTGGGCTCACCTGTGATAGCTGAAAGACTGGGTG  500

seq1  ATTTGACTCAAAGCAATAGTACATCATTTCTTTTCAGCCTTTAAGCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTCAAAGCAATAGTACATCATTTCTTTTCAGCCTTTAAGCCAGT  550

seq1  GATTTTCAAACTTTCTAATGCTGGGACTCTTTAATACAGTTCTTCCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCAAACTTTCTAATGCTGGGACTCTTTAATACAGTTCTTCCTTGT  600

seq1  GTTATGGTGACCTCCAACCATAAAATTATTCTTGTTGCTACTTTATAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGTGACCTCCAACCATAAAATTATTCTTGTTGCTACTTTATAACT  650

seq1  GTAGTTTTGCTACTGTTATGAATCATAATGTAAATATTTATGTTCTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTGCTACTGTTATGAATCATAATGTAAATATTTATGTTCTCTAG  700

seq1  TGGTCTTAGGTGACCCGTGTGTAAGGGACACACCCCAGGTGTCACAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTAGGTGACCCGTGTGTAAGGGACACACCCCAGGTGTCACAACCC  750

seq1  ACAGGTTGAAAGACAGCTGCCTTAAGCTGTCCAGCAGGAGAAGAGTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTGAAAGACAGCTGCCTTAAGCTGTCCAGCAGGAGAAGAGTGAAG  800

seq1  TCAGGAATGTGAGGTTGTGGGGACGGAGAGGGAGCAGGGAAGGCCCATAG  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAGGAATGTGAGGTTGTGGGGACGGAGAGGGAGCAGGAAAGGCCCATAG  850

seq1  CCCCTCAGTGATGCC-TTTTTTCCCCTCCACTTAGTGAATATTACTTCAG  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCCTCAGTGATGCCTTTTTTTCCCCTCCACTTAGTGAATATTACTTCAG  900

seq1  CGTGGACAATTTAGAGCGAG-ACTTCTTCCTGAGACGGAAAATGGATGCT  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CGTGGACAATTTAGAGCGAGAACTTCTTCCTGAGACGGAAAATGGATGCT  950

seq1  GATGGCTTCCTTCCC-ATCACCCTTATTGCTTCCTTTCACCGTGTA-CAG  996
      ||||||||||||||| ||||||| |||||||||| ||||||||||| |||
seq2  GATGGCTTCCTTCCCAATCACCC-TATTGCTTCC-TTCACCGTGTACCAG  998

seq1  GCCCTAACCACTGACATTTCA-CTCATCTTTGCGGTATGTCTCTTCCTGG  1045
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  GCCCTAACCACTGACATTTCACCTCATCTTTGCGGTATGTCTCTTCCT-G  1047

seq1  GGATGATGGT-GGGAAAATA  1064
      |||||||||| |||||||||
seq2  GGATGATGGTGGGGAAAATA  1067