BAC Information

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BAC

Clone NameB6Ng01-241L15
Chromosome11 (Build37)
Map Location 120,049,500 - 120,198,640
singlet/doubletdoublet
Overlap geneLOC100042332, LOC100043384, LOC100043389, Bahcc1
Upstream geneTbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik
Downstream geneActg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241L15.bB6Ng01-241L15.g
ACCGA051567GA051568
length715647
definitionB6Ng01-241L15.b B6Ng01-241L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,049,500 - 120,050,214)(120,197,994 - 120,198,640)
sequence
ccccggactttggaaggtggccacaattaaggatcgctttgtcccagaaa
gagggaccttccccccggccgggacccttctctcctcggcgggatccgtg
ctcaaccagactctgggtagggaagtcacactcttcctcaccccaactac
gacgaagatggatacttggtgtgcgtggggccggaagtttttaaacgaga
ttccactcgcagcttccaaacgtccacctggtgctgcacgcttgggggcc
ttttcttctaatttaaggggtgggaaggatgggacaaaagaaaaacaacc
caccttactttgcaatcttcctcaaagagactgggagtacttttcattcc
ataggggtttctaccccaccagccagagccccgtttcttcttctgaaatg
gtcttctcacaaagccacccttagccgacaccgtgtaaaatcccactatc
gggtaagccagtggggacgcttctggctcagctgcagctaacttgggaga
aaagaaagtgaattcttcaagaactttaaaataaaagcggccctttcccg
gcaactcgcgtctagcttcgcctttgttttaaacacacatataaaaccct
tgtccttcctcggaacggggggcggggagaactgagggtccacattcaga
agcgctttccccttaaaaaatattctcggaggagctcttttgtttgaagt
gggtatgggggaggg
gaattcaggacctctagaagagcagtcagtgctcttaaccgctgagctat
ccctccagccctagatttatttattttagtattttgcttgtttgcttttc
tgtgcatgttgtatgcctggtgcctacagaggtcagaagagaacattaga
tctcatggagctgggattagaaatggttgtgagattagaaatggttgtga
actaccacgtagtatgtggaatcaaacccaggtgctctgtaagaacaaca
agtgctcttaactgagccaactctccaggcctagagctgatatctattcc
tactaaagcacaaagaccttcctctgtgtttagggccattgctcagtaga
tgggtaaaactgatgctccctcctgggtgctccttcctagcttccccgat
gatgctaatgggcctaggcctcatactcacttctttattccacaactcca
gaagtggccccctggaagctgtgcaggaaaccctgactgatggattctct
ccaggcctttcaggaaatacctgacattgcgctataggacccagaaaccc
agcccagggacatctcagaacttgggcaacaggaccaacccaaagagagg
tcagagcctctatgtcccatggaggatggatgagtggtgtggagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120049500_120050214
seq2: B6Ng01-241L15.b_55_769

seq1  CCCCGGACTTTGGAAGGTGGCCACAATTAAGGATCGCTTTGTCCCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGACTTTGGAAGGTGGCCACAATTAAGGATCGCTTTGTCCCAGAAA  50

seq1  GAGGGACCTTCCCCCCGGCCGGGACCCTTCTCTCCTCGGCGGGATCCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACCTTCCCCCCGGCCGGGACCCTTCTCTCCTCGGCGGGATCCGTG  100

seq1  CTCAACCAGACTCTGGGTAGGGAAGTCACACTCTTCCTCACCCCAACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCAGACTCTGGGTAGGGAAGTCACACTCTTCCTCACCCCAACTAC  150

seq1  GACGAAGATGGATACTTGGTGTGCGTGGGGCCGGAAGTTTTTAAACGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAGATGGATACTTGGTGTGCGTGGGGCCGGAAGTTTTTAAACGAGA  200

seq1  TTCCACTCGCAGCTTCCAAACGTCCACCTGGTGCTGCACGCTTGGGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTCGCAGCTTCCAAACGTCCACCTGGTGCTGCACGCTTGGGGGCC  250

seq1  TTTTCTTCTAATTTAAGGGGTGGGAAGGATGGGACAAAAGAAAAACAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTAATTTAAGGGGTGGGAAGGATGGGACAAAAGAAAAACAACC  300

seq1  CACCTTACTTTGCAATCTTCCTCAAAGAGACTGGGAGTACTTTTCATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTACTTTGCAATCTTCCTCAAAGAGACTGGGAGTACTTTTCATTCC  350

seq1  ATAGGGGTTTCTACCCCACCAGCCAGAGCCCCGTTTCTTCTTCTGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGTTTCTACCCCACCAGCCAGAGCCCCGTTTCTTCTTCTGAAATG  400

seq1  GTCTTCTCACAAAGCCACCCTTAGCCGACACCGTGTAAAATCCCACTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCACAAAGCCACCCTTAGCCGACACCGTGTAAAATCCCACTATC  450

seq1  GGGTAAGCCAGTGGGGACGCTTCTGGCTCAGCTGCAGCTAACTTGGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGCCAGTGGGGACGCTTCTGGCTCAGCTGCAGCTAACTTGGGAGA  500

seq1  AAAGAAAGTGAATTCTTCAAGAACTTTAAAATAAAAGCGGCCCTTTCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTGAATTCTTCAAGAACTTTAAAATAAAAGCGGCCCTTTCCCG  550

seq1  GCAACTCGCGTCTAGCTTCGCCTTTGTTTTAAACACACATATAAAACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCGCGTCTAGCTTCGCCTTTGTTTTAAACACACATATAAAACCCT  600

seq1  TGTCCTTCCTCGGAACGGGGGGCGGGGAGAACTGAGGGTCCACATTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCCTCGGAACGGGGGGCGGGGAGAACTGAGGGTCCACATTCAGA  650

seq1  AGCGCTTTCCCCTTAAAAAATATTCTCGGAGGAGCTCTTTTGTTTGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTTTCCCCTTAAAAAATATTCTCGGAGGAGCTCTTTTGTTTGAAGT  700

seq1  GGGTATGGGGGAGGG  715
      |||||||||||||||
seq2  GGGTATGGGGGAGGG  715

seq1: chr11_120197994_120198640
seq2: B6Ng01-241L15.g_67_713 (reverse)

seq1  ACCCTCCACACCACTCATCCATCCTCCATGGGACATAGAGGCTCTGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCACACCACTCATCCATCCTCCATGGGACATAGAGGCTCTGACCT  50

seq1  CTCTTTGGGTTGGTCCTGTTGCCCAAGTTCTGAGATGTCCCTGGGCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGGTTGGTCCTGTTGCCCAAGTTCTGAGATGTCCCTGGGCTGGG  100

seq1  TTTCTGGGTCCTATAGCGCAATGTCAGGTATTTCCTGAAAGGCCTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTCCTATAGCGCAATGTCAGGTATTTCCTGAAAGGCCTGGAGA  150

seq1  GAATCCATCAGTCAGGGTTTCCTGCACAGCTTCCAGGGGGCCACTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATCAGTCAGGGTTTCCTGCACAGCTTCCAGGGGGCCACTTCTGG  200

seq1  AGTTGTGGAATAAAGAAGTGAGTATGAGGCCTAGGCCCATTAGCATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGAATAAAGAAGTGAGTATGAGGCCTAGGCCCATTAGCATCATC  250

seq1  GGGGAAGCTAGGAAGGAGCACCCAGGAGGGAGCATCAGTTTTACCCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGCTAGGAAGGAGCACCCAGGAGGGAGCATCAGTTTTACCCATCT  300

seq1  ACTGAGCAATGGCCCTAAACACAGAGGAAGGTCTTTGTGCTTTAGTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAATGGCCCTAAACACAGAGGAAGGTCTTTGTGCTTTAGTAGGA  350

seq1  ATAGATATCAGCTCTAGGCCTGGAGAGTTGGCTCAGTTAAGAGCACTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATCAGCTCTAGGCCTGGAGAGTTGGCTCAGTTAAGAGCACTTGT  400

seq1  TGTTCTTACAGAGCACCTGGGTTTGATTCCACATACTACGTGGTAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTACAGAGCACCTGGGTTTGATTCCACATACTACGTGGTAGTTCA  450

seq1  CAACCATTTCTAATCTCACAACCATTTCTAATCCCAGCTCCATGAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTTCTAATCTCACAACCATTTCTAATCCCAGCTCCATGAGATCT  500

seq1  AATGTTCTCTTCTGACCTCTGTAGGCACCAGGCATACAACATGCACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTCTTCTGACCTCTGTAGGCACCAGGCATACAACATGCACAGAA  550

seq1  AAGCAAACAAGCAAAATACTAAAATAAATAAATCTAGGGCTGGAGGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAAGCAAAATACTAAAATAAATAAATCTAGGGCTGGAGGGATA  600

seq1  GCTCAGCGGTTAAGAGCACTGACTGCTCTTCTAGAGGTCCTGAATTC  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCGGTTAAGAGCACTGACTGCTCTTCTAGAGGTCCTGAATTC  647