BAC Information

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BAC

Clone NameB6Ng01-243E12
Chromosome11 (Build37)
Map Location 120,928,205 - 121,074,413
singlet/doubletdoublet
Overlap geneSectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc
Upstream geneAzi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b
Downstream geneBC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243E12.bB6Ng01-243E12.g
ACCGA052708GA052709
length1,0471,107
definitionB6Ng01-243E12.b B6Ng01-243E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,928,205 - 120,929,237)(121,073,311 - 121,074,413)
sequence
gaattctggtagatttttatgtttttaacaactgtatttcctgagttggg
gctcaggagtctgctgaagagaggcccccagggaatcccaagattctcta
tgatctgattgtctcatcatttatttaaagattagtagctaggatagagt
atggacatctagtgttcagtgacagggctcagctcataaaagcatttgcc
tgatgacttgaatttgatttttggaatctgtaaaagtcagatgtggtgca
cgtatctgccatctgggcactcttagcaccgctgaggtagagactagaga
attgtttggatactaatgggtttggatagttaatctgcaacatataccat
agtagcagaatcaagagagattctgcctgaaaacaaggtgaaaggcaata
actgattcccaaaatgcacctctgccctccataatgcaccctggcatgta
catacacactcatgcacaacaatgataataaaataataataaattaaaaa
taaataaagtatgaagtttctacaaaaatcattttttaattgtaagaaaa
aataacattgtaactaggacaaaagtttagaaaagaacagtgggtagtgg
ctgttgaatcagggagttggggctcaggagtctgctgaagagaagccccc
agggaatcccaagatgctctatgatcctcaggagagcaatgcctgccaac
caacactacatccttccacagacccctgttcctgacagcactctgccttg
caggggtgggagtgggggagatgattcatctgaaagtcttagctccctat
tttggcccctggaacctgacatctgggcttcccgaactcgtttctgttgt
gagtcagaaatcaggtacgccccccaagttgtacctgaagcaaatctttg
gtgcagcatccaggcttacactggagctctttgggttggttagtgagacc
cctaaccctcagagggtttagcagaaataatgaagccctatgccgatcgt
ccaagagctgtgcgggctggaattcccaattttgggggaagaagttg
gaattcacacacacaccccccccacaaggacccccacgccaaaaataaaa
aatgcaacccagtcccagctgccccatgactacttactcttccttgtagg
gtcagaatagatatttattttctcttttaaatgtttcctgattaccttta
atgtacatgttttattttaaaatatgttctgccgggcggtggtggcgcac
acctttaatcctagcacttgagaggcagaggcaggcggatttctgagttc
aaggccagcctggtctacagaatgagttccaggacagccagggctataca
gagaaaccctgtctcaaaaaagccaaaaaaataaaaaaattttaaaaata
aaaataaaaatatgttctacatatgtgtgtgtgtgccatgtgtatgtgtg
tgtaccatctgtatgtgtgccatgtgtatgtatgtgtaccacgtgtatgt
gtgtgtaccacgtatatgtatgtgtaccatgtgtatgtatgtgtaccatg
tgtatgtatgtgtaccatgtgtatgcaggaacctgcggaggtcagccgag
ggcactggctgtcctggacctggaattgcaggtggttgggagccactatg
tgagtactgggaaccaaacccaggtctgtttttgagacaggatttcaatc
tgcagcccaagatggcctttgactttcaataatcatcctgttgttaaaag
cctcccaaatgctgggatcataggtgtgatccactacacgtggctacatg
tcttaattttataaccaaattttatacacacacacacacaaatgtgtata
tatatatatatatatatatatgtacatgcacttaggaagacaaaaaggac
tgtaaaatgttagtttccaattatcccatccacagtaatgcccatgcctt
tctcccctcccccaccccctacttggcacccttcagctagctttgatacc
tgtatgcatgcttgggccctcagcagcctcaggtggcccctcaataggga
aacatgtctttcgtactcaatgaagaggcccattttgcacaagtgcatgg
aacaaggggaaaatctggatagagacgaaggggtgtggaaaagggcatct
gaacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120928205_120929237
seq2: B6Ng01-243E12.b_45_1091

seq1  GAATTCTGGTAGATTTTTATGTTTTTAACAACTGTATTTCCTGAGTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTAGATTTTTATGTTTTTAACAACTGTATTTCCTGAGTTGGG  50

seq1  GCTCAGGAGTCTGCTGAAGAGAGGCCCCCAGGGAATCCCAAGATTCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGAGTCTGCTGAAGAGAGGCCCCCAGGGAATCCCAAGATTCTCTA  100

seq1  TGATCTGATTGTCTCATCATTTATTTAAAGATTAGTAGCTAGGATAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGATTGTCTCATCATTTATTTAAAGATTAGTAGCTAGGATAGAGT  150

seq1  ATGGACATCTAGTGTTCAGTGACAGGGCTCAGCTCATAAAAGCATTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATCTAGTGTTCAGTGACAGGGCTCAGCTCATAAAAGCATTTGCC  200

seq1  TGATGACTTGAATTTGATTTTTGGAATCTGTAAAAGTCAGATGTGGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTTGAATTTGATTTTTGGAATCTGTAAAAGTCAGATGTGGTGCA  250

seq1  CGTATCTGCCATCTGGGCACTCTTAGCACCGCTGAGGTAGAGACTAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTGCCATCTGGGCACTCTTAGCACCGCTGAGGTAGAGACTAGAGA  300

seq1  ATTGTTTGGATACTAATGGGTTTGGATAGTTAATCTGCAACATATACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGGATACTAATGGGTTTGGATAGTTAATCTGCAACATATACCAT  350

seq1  AGTAGCAGAATCAAGAGAGATTCTGCCTGAAAACAAGGTGAAAGGCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGAATCAAGAGAGATTCTGCCTGAAAACAAGGTGAAAGGCAATA  400

seq1  ACTGATTCCCAAAATGCACCTCTGCCCTCCATAATGCACCCTGGCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTCCCAAAATGCACCTCTGCCCTCCATAATGCACCCTGGCATGTA  450

seq1  CATACACACTCATGCACAACAATGATAATAAAATAATAATAAATTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACTCATGCACAACAATGATAATAAAATAATAATAAATTAAAAA  500

seq1  TAAATAAAGTATGAAGTTTCTACAAAAATCATTTTTTAATTGTAAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGTATGAAGTTTCTACAAAAATCATTTTTTAATTGTAAGAAAA  550

seq1  AATAACATTGTAACTAGGACAAAAGTTTAGAAAAGAACAGTGGGTAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATTGTAACTAGGACAAAAGTTTAGAAAAGAACAGTGGGTAGTGG  600

seq1  CTGTTGAATCAGGGAGTTGGGGCTCAGGAGTCTGCTGAAGAGAAGCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAATCAGGGAGTTGGGGCTCAGGAGTCTGCTGAAGAGAAGCCCCC  650

seq1  AGGGAATCCCAAGATGCTCTATGATCCTCAGGAGAGCAATGCCTGCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCCCAAGATGCTCTATGATCCTCAGGAGAGCAATGCCTGCCAAC  700

seq1  CAACACTACATCCTTCCACAGACCCCTGTTCCTGACAGCACTCTGCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTACATCCTTCCACAGACCCCTGTTCCTGACAGCACTCTGCCTTG  750

seq1  CAGGGGTGGGAGT-GGGGAGATGATTCATCTGAAAGTCTTAGCTCCCTAT  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTGGGAGTGGGGGAGATGATTCATCTGAAAGTCTTAGCTCCCTAT  800

seq1  TTTGGCCCCTGGAACCTGACATCTGGGCTTCCCGAACTCGTTTCTGTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCCTGGAACCTGACATCTGGGCTTCCCGAACTCGTTTCTGTTGT  850

seq1  GAGTCAGAAATCAGGTACG-CCCCCAAGTTGTACCTGAAGCAAATC-TTG  897
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  GAGTCAGAAATCAGGTACGCCCCCCAAGTTGTACCTGAAGCAAATCTTTG  900

seq1  GTGCAGCAT-CAGGCTTACACTGGAGCTCTTTGGGT--GGTAGTGAGA-C  943
      ||||||||| ||||||||||||||||||||||||||  | |||||||| |
seq2  GTGCAGCATCCAGGCTTACACTGGAGCTCTTTGGGTTGGTTAGTGAGACC  950

seq1  CCTAA-CCTCAGA-GGTTTAGCAGAAATAATGAAG-CCTATGCCGATCGT  990
      ||||| ||||||| ||||||||||||||||||||| ||||||||||||||
seq2  CCTAACCCTCAGAGGGTTTAGCAGAAATAATGAAGCCCTATGCCGATCGT  1000

seq1  -CAAGAGCTGTGCGGCTGGGAATTCCCAATTT--GGGGAAG-AGTTG  1033
       ||||||||||||||   ||||||||||||||  ||||||| |||||
seq2  CCAAGAGCTGTGCGGGCTGGAATTCCCAATTTTGGGGGAAGAAGTTG  1047

seq1: chr11_121073311_121074413
seq2: B6Ng01-243E12.g_64_1170 (reverse)

seq1  GGTGTTCAGATTGCCCCTTTTCCAACACCCTCTGTCTCTATCCAGGTTTT  50
      |||||||||||   ||||||||||   ||||  |||||||||||| ||||
seq2  GGTGTTCAGAT--GCCCTTTTCCACACCCCTTCGTCTCTATCCAGATTTT  48

seq1  TCCCTTGTTCCATGCACTTGGTGCAAA--TGGCCTCCTCATTGAGTACG-  97
       |||||||||||||||||| |||||||   |||||| |||||||||||| 
seq2  CCCCTTGTTCCATGCACTT-GTGCAAAATGGGCCTCTTCATTGAGTACGA  97

seq1  AAGACATGTTTCCCTA-TGA-GGGCCACCTGAGGCTGCTGAGGG-CCAAG  144
      |||||||||||||||| ||| ||||||||||||||||||||||| |||||
seq2  AAGACATGTTTCCCTATTGAGGGGCCACCTGAGGCTGCTGAGGGCCCAAG  147

seq1  CATGCATACAGGTATCAAAGCTAGCTG-AGGGTGCCAAGTAGGGGGTGGG  193
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATGCATACAGGTATCAAAGCTAGCTGAAGGGTGCCAAGTAGGGGGTGGG  197

seq1  GGAGGGGAGAAAGGCATGGGCATTACTGTGGATGGGATAATTGGAAACTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAGAAAGGCATGGGCATTACTGTGGATGGGATAATTGGAAACTA  247

seq1  ACATTTTACAGTCCTTTTTGTCTTCCTAAGTGCATGTACATATATATATA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTACAGTCCTTTTTGTCTTCCTAAGTGCATGTACATATATATATA  297

seq1  TATATATATATATACACATTTGTGTGTGTGTGTGTATAAAATTTGGTTAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATACACATTTGTGTGTGTGTGTGTATAAAATTTGGTTAT  347

seq1  AAAATTAAGACATGTAGCCACGTGTAGTGGATCACACCTATGATCCCAGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAGACATGTAGCCACGTGTAGTGGATCACACCTATGATCCCAGC  397

seq1  ATTTGGGAGGCTTTTAACAACAGGATGATTATTGAAAGTCAAAGGCCATC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGAGGCTTTTAACAACAGGATGATTATTGAAAGTCAAAGGCCATC  447

seq1  TTGGGCTGCAGATTGAAATCCTGTCTCAAAAACAGACCTGGGTTTGGTTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGCAGATTGAAATCCTGTCTCAAAAACAGACCTGGGTTTGGTTC  497

seq1  CCAGTACTCACATAGTGGCTCCCAACCACCTGCAATTCCAGGTCCAGGAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACTCACATAGTGGCTCCCAACCACCTGCAATTCCAGGTCCAGGAC  547

seq1  AGCCAGTGCCCTCGGCTGACCTCCGCAGGTTCCTGCATACACATGGTACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGCCCTCGGCTGACCTCCGCAGGTTCCTGCATACACATGGTACA  597

seq1  CATACATACACATGGTACACATACATACACATGGTACACATACATATACG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACACATGGTACACATACATACACATGGTACACATACATATACG  647

seq1  TGGTACACACACATACACGTGGTACACATACATACACATGGCACACATAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACACACACATACACGTGGTACACATACATACACATGGCACACATAC  697

seq1  AGATGGTACACACACATACACATGGCACACACACACATATGTAGAACATA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTACACACACATACACATGGCACACACACACATATGTAGAACATA  747

seq1  TTTTTATTTTTATTTTTAAAATTTTTTTATTTTTTTGGCTTTTTTGAGAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTATTTTTAAAATTTTTTTATTTTTTTGGCTTTTTTGAGAC  797

seq1  AGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCATTCTGTAGACCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCATTCTGTAGACCA  847

seq1  GGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCTCAAGTGCTAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCTCAAGTGCTAG  897

seq1  GATTAAAGGTGTGCGCCACCACCGCCCGGCAGAACATATTTTAAAATAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGCGCCACCACCGCCCGGCAGAACATATTTTAAAATAAA  947

seq1  ACATGTACATTAAAGGTAATCAGGAAACATTTAAAAGAGAAAATAAATAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACATTAAAGGTAATCAGGAAACATTTAAAAGAGAAAATAAATAT  997

seq1  CTATTCTGACCCTACAAGGAAGAGTAAGTAGTCATGGGGCAGCTGGGACT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGACCCTACAAGGAAGAGTAAGTAGTCATGGGGCAGCTGGGACT  1047

seq1  GGGTTGCATTTTTTATTTTTGGCGTGGGGGTCCTTGTGGGGGGGGTGTGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCATTTTTTATTTTTGGCGTGGGGGTCCTTGTGGGGGGGGTGTGT  1097

seq1  GTGTGAATTC  1103
      ||||||||||
seq2  GTGTGAATTC  1107