BAC Information

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BAC

Clone NameB6Ng01-243J08
Chromosome11 (Build37)
Map Location 25,519,125 - 25,606,710
singlet/doubletdoublet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243J08.bB6Ng01-243J08.g
ACCGA052928GA052929
length1,1541,135
definitionB6Ng01-243J08.b B6Ng01-243J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,519,125 - 25,520,289)(25,605,576 - 25,606,710)
sequence
gaattcagacatggtgatgaggagaaatgaagaattaacagataaataac
caatttggaaaattcaggctgagactcttttctcaatttctactctgtcc
ttcctctctgccccaattatctccagcaaatctccagtgaggtgagtggg
catctttattgtgttggttttctctcctgcacataagcacaacaaactac
acacactaggcttgtaccgaatgataccaagatgatcagtgtgaacaaaa
aagaaataaatttctaatgttgaaaatgactacaagaactaagactgaca
ggggcacacagagaaaggtcagggaattaaatatgaagtgtaaagataac
gatgctttcttcctaggattcattcatgcacttacttcgggacaggaatg
tttagaaaagagatcctctgaaatcactatggagtgcctccagcagccct
gtgtgggataacagagagagacaaagtaaacgctgaaaattaataataaa
gggaaatattgaagtcatatgattgccaccaaattcataaagtaaagctg
gaaattcacaaaagttaagctcataaagtctaggaaaaaatagttaaaat
aaaactcttgacaaatatcaacagacccacttaaaaattatccaggctgg
ttattttatctacttaatgtcaaaatagtttgattctttctcaaatagtt
aaaagatttaatgatggtagatttataaaactctagcacatagattttga
accaagcttgagataatacttttttaactacaaacaaaaaatgctaagaa
cagccaacccctaaagttaagccctgaagattcttctccaaacttcctaa
cactcagagaagcctggtgaggtcactcacacctgtattccccattctgg
agaagctaaggccagaagacgtccatgaaaacaaacaagctaatatccag
aacattttgtgtgggtgtatcccttttttggttacattttagtaatcttt
tttattttgatgggtatattgctaggatactttttttataactctcattt
gcaccttggagatgtatcattttgcagtgacatactccatcacatttcat
ctgtcttggcttctcatctagtacatcattgctctgtattgctacagcca
aaac

gaattctgatggtttatctttccattttactttcagatatttggtcttgc
tgtgcccaggctggctgaagtcctgggctgcaggcctgaaccactattcc
ctatgaatctgattatttatatttatatcccttcccccaacacacacacc
tcacacacacagtgcttagaactgtacatgggattcagtacaggcagagt
tggtgttttcctttcttaacaggactggatatatttattaatttccataa
aatgtcaattttgcatatgttttgtttttgtttttaaatttgtggctgtt
aagctaaaatcccaggaaatggagagatggctcagcagttaagggtgctt
actgttctaacagagaacacaagagtttggttccaagaccccacatggtg
actcacagctacccgcaactccatttcaaggcagatctgacaacctcttg
tgacttctgtaggcttctgcacacatgaagtgaacatacatatactcaga
aatacatacatacatacatacatacatacatacatacatatgaaatagaa
taataagcaactatgttttaagaagatgcaaaacccagacataggggccc
tagttaacacactcagaaattatatgtgacctgtcacttataagaaacaa
agtcatctctccagattctcctagggtgagaaggctggtggttgcctttg
tctgcttcatgagaagaaataaaaatgtaaagtatgtcttttatccatga
tttccctctcattgtactgtcattaaggacttctaagactgtaatgtcag
tctgagacattgcataatagacagtaattaaagacctaaatcttgactca
aatactgcaatattattgctctgaaagggagaaaaataaattaaaatcta
tttcaaatcactgtatggaaatacttatttgtaaattctcaacttagtgt
gtgtgttgcttttaaaaataatgggtatttttaagctaatgaatagtttt
aattcttcatctgtgcataggactcatatcaaaatatgaggattcttagt
gattatgagcactggacggtggagaggactagttatatagctaatggcag
gggcaatgcaaagatgttcttttacctcttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25519125_25520289
seq2: B6Ng01-243J08.b_44_1197

seq1  GAATTCAGACATGGTGATGAGGAGAAATGAAGAATTAACAGATAAATAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACATGGTGATGAGGAGAAATGAAGAATTAACAGATAAATAAC  50

seq1  CAATTTGGAAAATTCAGGCTGAGACTCTTTTCTCAATTTCTACTCTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGGAAAATTCAGGCTGAGACTCTTTTCTCAATTTCTACTCTGTCC  100

seq1  TTCCTCTCTGCCCCAATTATCTCCAGCAAATCTCCAGTGAGGTGAGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTGCCCCAATTATCTCCAGCAAATCTCCAGTGAGGTGAGTGGG  150

seq1  CATCTTTATTGTGTTGGTTTTCTCTCCTGCACATAAGCACAACAAACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTATTGTGTTGGTTTTCTCTCCTGCACATAAGCACAACAAACTAC  200

seq1  ACACACTAGGCTTGTACCGAATGATACCAAGATGATCAGTGTGAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTAGGCTTGTACCGAATGATACCAAGATGATCAGTGTGAACAAAA  250

seq1  AAGAAATAAATTTCTAATGTTGAAAATGACTACAAGAACTAAGACTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAAATTTCTAATGTTGAAAATGACTACAAGAACTAAGACTGACA  300

seq1  GGGGCACACAGAGAAAGGTCAGGGAATTAAATATGAAGTGTAAAGATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACACAGAGAAAGGTCAGGGAATTAAATATGAAGTGTAAAGATAAC  350

seq1  GATGCTTTCTTCCTAGGATTCATTCATGCACTTACTTCGGGACAGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTCTTCCTAGGATTCATTCATGCACTTACTTCGGGACAGGAATG  400

seq1  TTTAGAAAAGAGATCCTCTGAAATCACTATGGAGTGCCTCCAGCAGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAGAGATCCTCTGAAATCACTATGGAGTGCCTCCAGCAGCCCT  450

seq1  GTGTGGGATAACAGAGAGAGACAAAGTAAACGCTGAAAATTAATAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGATAACAGAGAGAGACAAAGTAAACGCTGAAAATTAATAATAAA  500

seq1  GGGAAATATTGAAGTCATATGATTGCCACCAAATTCATAAAGTAAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATATTGAAGTCATATGATTGCCACCAAATTCATAAAGTAAAGCTG  550

seq1  GAAATTCACAAAAGTTAAGCTCATAAAGTCTAGGAAAAAATAGTTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCACAAAAGTTAAGCTCATAAAGTCTAGGAAAAAATAGTTAAAAT  600

seq1  AAAACTCTTGACAAATATCAACAGACCCACTTAAAAATTATCCAGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTGACAAATATCAACAGACCCACTTAAAAATTATCCAGGCTGG  650

seq1  TTATTTTATCTACTTAATGTCAAAATAGTTTGATTCTTTCTCAAATAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATCTACTTAATGTCAAAATAGTTTGATTCTTTCTCAAATAGTT  700

seq1  AAAAGATTTAATGATGGTAGATTTATAAAACTCTAGCACATAGATTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTTAATGATGGTAGATTTATAAAACTCTAGCACATAGATTTTGA  750

seq1  ACCAAGCTTGAGATAATACTTTTTTAACTACAAACAAAAAATGCTAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTTGAGATAATACTTTTTTAACTACAAACAAAAAATGCTAAGAA  800

seq1  CAG-TAACCCTTAAAGTTAAGCCCTGAAGATTCTTCTCCAAACTTCCTAA  849
      |||  ||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAACCCCTAAAGTTAAGCCCTGAAGATTCTTCTCCAAACTTCCTAA  850

seq1  CACTCAGAGAAGCCTGGTGAGGTCACTCACACCTGTATTCCCCATTCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAGAAGCCTGGTGAGGTCACTCACACCTGTATTCCCCATTCTGG  900

seq1  AGAAGCTAAGGCCAGAAGACGTCCATGAAAACAAACAAGCTAATATCCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAAGGCCAGAAGACGTCCATGAAAACAAACAAGCTAATATCCAG  950

seq1  AACATTTTGTGTGGGTGTAT-CCTTTTTTGGTTACATTTTAGTAATC-TT  997
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  AACATTTTGTGTGGGTGTATCCCTTTTTTGGTTACATTTTAGTAATCTTT  1000

seq1  TTTATTTTGATGGTTATTAATTGCTAAGGATAC--TTTTTATAACTCCTC  1045
      ||||||||||||| |||  |||||| |||||||  ||||||||||| |||
seq2  TTTATTTTGATGGGTAT--ATTGCT-AGGATACTTTTTTTATAACT-CTC  1046

seq1  ATTTTGCAACCTTGGAGATGTATCATTTTGCAGGTGACATACTCCATTCA  1095
      | ||||| |||||||||||||||||||||||| ||||||||||||| |||
seq2  A-TTTGC-ACCTTGGAGATGTATCATTTTGCA-GTGACATACTCCA-TCA  1092

seq1  CATTTTCATCTGTCCTTTGCCTCCTTCCTTCTTAGTACATCATTTGTTTC  1145
      || |||||||||||  ||| || ||  | || ||||||||||||  |   
seq2  CA-TTTCATCTGTC--TTGGCTTCT--CATC-TAGTACATCATTGCT---  1133

seq1  CTTTATTGCTACAG-CAAAAC  1165
      || ||||||||||| ||||||
seq2  CTGTATTGCTACAGCCAAAAC  1154


seq1: chr11_25605576_25606710
seq2: B6Ng01-243J08.g_65_1199 (reverse)

seq1  AAAAAAAGA-GTAAAAG-ACATCTTTTTCATTTCCCCCTGCCA-TAGCTA  47
      ||||||||| ||||||| ||||| ||| || || ||||||||| ||||||
seq2  AAAAAAAGAGGTAAAAGAACATC-TTTGCA-TTGCCCCTGCCATTAGCTA  48

seq1  TATAACTAGT-CTCT-CACAATTCAGTGGCTCAATTAATCACTAAGAATT  95
      |||||||||| |||| |||  | |||| |||||  |||||||||||||| 
seq2  TATAACTAGTCCTCTCCACCGTCCAGT-GCTCA--TAATCACTAAGAATC  95

seq1  CTCATTATTTTGATATGAGTCTTATGCACAGATGAAGAAATTAAAACTAT  145
      |||| |||||||||||||||| ||||||||||||||| ||||||||||||
seq2  CTCA-TATTTTGATATGAGTCCTATGCACAGATGAAG-AATTAAAACTAT  143

seq1  TCATTAGCTT-AAAATAACCATTA-TTTTAAAAGCAACACACACACTAAG  193
      |||||||||| |||||| |||||| |||||||||||||||||||||||||
seq2  TCATTAGCTTAAAAATACCCATTATTTTTAAAAGCAACACACACACTAAG  193

seq1  TTGAGAATTTACAAATAAGTATTTCCATACAGTGATTTGAAATAGATTTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATTTACAAATAAGTATTTCCATACAGTGATTTGAAATAGATTTT  243

seq1  AATTTATTTTTCTCCCTTTCAGAGCAATAATATTGCAGTATTTGAGTCAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTTTCTCCCTTTCAGAGCAATAATATTGCAGTATTTGAGTCAA  293

seq1  GATTTAGGTCTTTAATTACTGTCTATTATGCAATGTCTCAGACTGACATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGGTCTTTAATTACTGTCTATTATGCAATGTCTCAGACTGACATT  343

seq1  ACAGTCTTAGAAGTCCTTAATGACAGTACAATGAGAGGGAAATCATGGAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTAGAAGTCCTTAATGACAGTACAATGAGAGGGAAATCATGGAT  393

seq1  AAAAGACATACTTTACATTTTTATTTCTTCTCATGAAGCAGACAAAGGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACATACTTTACATTTTTATTTCTTCTCATGAAGCAGACAAAGGCA  443

seq1  ACCACCAGCCTTCTCACCCTAGGAGAATCTGGAGAGATGACTTTGTTTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGCCTTCTCACCCTAGGAGAATCTGGAGAGATGACTTTGTTTCT  493

seq1  TATAAGTGACAGGTCACATATAATTTCTGAGTGTGTTAACTAGGGCCCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTGACAGGTCACATATAATTTCTGAGTGTGTTAACTAGGGCCCCT  543

seq1  ATGTCTGGGTTTTGCATCTTCTTAAAACATAGTTGCTTATTATTCTATTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGGTTTTGCATCTTCTTAAAACATAGTTGCTTATTATTCTATTT  593

seq1  CATATGTATGTATGTATGTATGTATGTATGTATGTATGTATTTCTGAGTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATGTATGTATGTATGTATGTATGTATGTATGTATTTCTGAGTA  643

seq1  TATGTATGTTCACTTCATGTGTGCAGAAGCCTACAGAAGTCACAAGAGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTTCACTTCATGTGTGCAGAAGCCTACAGAAGTCACAAGAGGT  693

seq1  TGTCAGATCTGCCTTGAAATGGAGTTGCGGGTAGCTGTGAGTCACCATGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATCTGCCTTGAAATGGAGTTGCGGGTAGCTGTGAGTCACCATGT  743

seq1  GGGGTCTTGGAACCAAACTCTTGTGTTCTCTGTTAGAACAGTAAGCACCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTGGAACCAAACTCTTGTGTTCTCTGTTAGAACAGTAAGCACCC  793

seq1  TTAACTGCTGAGCCATCTCTCCATTTCCTGGGATTTTAGCTTAACAGCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCTGAGCCATCTCTCCATTTCCTGGGATTTTAGCTTAACAGCCA  843

seq1  CAAATTTAAAAACAAAAACAAAACATATGCAAAATTGACATTTTATGGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAAAAACAAAAACAAAACATATGCAAAATTGACATTTTATGGAA  893

seq1  ATTAATAAATATATCCAGTCCTGTTAAGAAAGGAAAACACCAACTCTGCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAATATATCCAGTCCTGTTAAGAAAGGAAAACACCAACTCTGCC  943

seq1  TGTACTGAATCCCATGTACAGTTCTAAGCACTGTGTGTGTGAGGTGTGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGAATCCCATGTACAGTTCTAAGCACTGTGTGTGTGAGGTGTGTG  993

seq1  TGTTGGGGGAAGGGATATAAATATAAATAATCAGATTCATAGGGAATAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGGGAAGGGATATAAATATAAATAATCAGATTCATAGGGAATAGT  1043

seq1  GGTTCAGGCCTGCAGCCCAGGACTTCAGCCAGCCTGGGCACAGCAAGACC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGGCCTGCAGCCCAGGACTTCAGCCAGCCTGGGCACAGCAAGACC  1093

seq1  AAATATCTGAAAGTAAAATGGAAAGATAAACCATCAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTGAAAGTAAAATGGAAAGATAAACCATCAGAATTC  1135


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