BAC Information

Click to search

BAC

Clone NameB6Ng01-246E01
Chromosome11 (Build37)
Map Location 89,867,515 - 89,998,385
singlet/doubletdoublet
Overlap geneTmem100
Upstream geneTrim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1, Pctp
Downstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246E01.bB6Ng01-246E01.g
ACCGA054917GA054918
length6301,047
definitionB6Ng01-246E01.b B6Ng01-246E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,867,515 - 89,868,144)(89,997,333 - 89,998,385)
sequence
gaattccagaagaagagaacaggaaggtggggtgtttgggtgagtaggcg
gtgggggagatagagaggagcgagggtgagaaggactcaggaagctgaaa
cgtaatgaaaatgttcaacaacacggaaaacagcacaaggtgaggcagag
ttctgtttaagaggtcaataagagattgattaacttggtgttgtttaact
gtgcagtaaaaacaaggatatgaactcctcagtgtcaatataaaaaaaaa
cctatggaaaacaaaagtgaatataatatttaattatgtatctcacctag
aagctattaccaaatgacagggaaagaggttcggcattattggtccttca
gacagtttgcattaaaaccagagtgaggtattactgtatagttattagaa
tggctaaaggcaaagaattcatcagggctaggaaggaggctccatgggaa
aaggtgcttgctgcagagtctcatgagctgagttcaagtcccagaacaca
caggatggaaggaggaagccgaattacataggttgtcttctgacctccac
acctgtgttaatggcatttttataccacaaaccacacacacactctgaga
gagagagagagagagagagagagagagaga
gaattcttgttgtttaagctaagacctaaatggtgggaggagccagacag
ggaaagtcatgggaggcatgttatagacagagggactgtaaactcatcag
ccgcaatgggctgaggacgaatttaggaagaatggagggacagcttagtt
ttaaagtgtccatctagatcagtggttctcaacctgtgggtcatgaccat
catgggagtcacatataagatatttacattacggttcataacggtaacaa
aattaccgttatgaagtagcaacgaaactattttatggttggggtgggga
taaccatatcatgatgaactgtatgtattaaagggtcacagcattaggaa
ggttgagaaccactgccctagatcatacaagaataaacctcagccatttt
cccacgatatcttggcaaagaaatgaggacatgcagctcagacgttcaga
ccccagcgtgtactttgtgctaatattccggtatctggttctgttggttt
gtgagaatgccaccaattactgatgttcttatggcctttccacgtttcct
gcctatgtttctaggctgacttatcatctgtgcctggcttttatcaccat
tgtggtggcacagttgacgtcaatgatttacatggagctgcatctacagc
tgttcggctatttgtgttttaggtaagatagctgcttcattagttgtctc
ttcaaaactgttttttttttctccagggggagggatcttggagagttctg
tattacattattcttgctgatgagaaagtcagagaagacagactttatga
aagtaactataaattgtgatgtattctttattttcaggcagttgcctcag
tttccaaaacagatgtccacatctgagagtataggtcgggataaagaaac
atgagacccttacagttcaagtttagaactgaagcctacctaagcccatc
tgggggttttgcaaatctgtaagacaggatataataattgctcccaccac
attagacaaatagtctcagtttcctgggcctcaatgactagtatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_89867515_89868144
seq2: B6Ng01-246E01.b_47_676

seq1  GAATTCCAGAAGAAGAGAACAGGAAGGTGGGGTG-TGGGGTGAGTAGGCG  49
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  GAATTCCAGAAGAAGAGAACAGGAAGGTGGGGTGTTTGGGTGAGTAGGCG  50

seq1  GTGGGGGAGATAGAGAGGAGCGAGGGTGAGAAGGACTCAGGAAGCTGAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGAGATAGAGAGGAGCGAGGGTGAGAAGGACTCAGGAAGCTGAAA  100

seq1  CGTAATGAAAATGTTCAACAACACGGAAAACAGCACAAGGTGAGGCAGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATGAAAATGTTCAACAACACGGAAAACAGCACAAGGTGAGGCAGAG  150

seq1  TTCTGTTTAAGAGGTCAATAAGAGATTGATTAACTTGGTGTTGTTTAACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTAAGAGGTCAATAAGAGATTGATTAACTTGGTGTTGTTTAACT  200

seq1  GTGCAGTAAAAACAAGGATATGAACTCCTCAGTGTCAATATAAAAAAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTAAAAACAAGGATATGAACTCCTCAGTGTCAATATAAAAAAAAA  250

seq1  CCTATGGAAAACAAAAGTGAATATAATATTTAATTATGTATCTCACCTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGAAAACAAAAGTGAATATAATATTTAATTATGTATCTCACCTAG  300

seq1  AAGCTATTACCAAATGACAGGGAAAGAGGTTCGGCATTATTGGTCCTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTACCAAATGACAGGGAAAGAGGTTCGGCATTATTGGTCCTTCA  350

seq1  GACAGTTTGCATTAAAACCAGAGTGAGGTATTACTGTATAGTTATTAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTGCATTAAAACCAGAGTGAGGTATTACTGTATAGTTATTAGAA  400

seq1  TGGCTAAAGGCAAAGAATTCATCAGGGCTAGGAAGGAGGCTCCATGGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAAGGCAAAGAATTCATCAGGGCTAGGAAGGAGGCTCCATGGGAA  450

seq1  AAGGTGCTTGCTGCAGAGTCTCATGAGCTGAGTTCAAGTCCCAGAACACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTTGCTGCAGAGTCTCATGAGCTGAGTTCAAGTCCCAGAACACA  500

seq1  CAGGATGGAAGGAGGAAGCCGAATTACATAGGTTGTCTTCTGACCTCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGAAGGAGGAAGCCGAATTACATAGGTTGTCTTCTGACCTCCAC  550

seq1  ACCTGTGTTAATGGCATTTTTATACCACAAACACACACACACACACAGAG  599
      |||||||||||||||||||||||||||||||| ||||||||||| | |||
seq2  ACCTGTGTTAATGGCATTTTTATACCACAAAC-CACACACACACTCTGAG  599

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  630
      |||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  630

seq1: chr11_89997333_89998385
seq2: B6Ng01-246E01.g_67_1113 (reverse)

seq1  GAGATTCACTAGTTCATTTGAGGGCCCCAGGAACCTGAGACTATTTTGTC  50
      |||||  ||||| ||| ||||||  |||||||| ||||||||| ||||||
seq2  GAGAT--ACTAG-TCA-TTGAGG--CCCAGGAAACTGAGACTA-TTTGTC  43

seq1  TAATGTTGGTGTGAGCAATTATTTTATATCCTGTCTTTACAGATTTGCAA  100
      ||||| ||||| |||||||||  |||||||||||| ||||||||||||||
seq2  TAATG-TGGTGGGAGCAATTA--TTATATCCTGTC-TTACAGATTTGCAA  89

seq1  AACCCCCAGATGGGGCTTAGGTAGGCTTCAAGTTCT-AACTTG-ACTGTA  148
      ||||||||||| ||||||||||||||||| |||||| |||||| ||||||
seq2  AACCCCCAGAT-GGGCTTAGGTAGGCTTC-AGTTCTAAACTTGAACTGTA  137

seq1  AGGGTCTCATGTT--CTTATCCCGA-CTATACTCTCAGATGTGGACATCT  195
      |||||||||||||   ||||||||| ||||||||||||||||||||||||
seq2  AGGGTCTCATGTTTCTTTATCCCGACCTATACTCTCAGATGTGGACATCT  187

seq1  GTTTTGGAAACTGAGGC-ACTGCCTGAAAATAAAGAATACATCACAATTT  244
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTTTGGAAACTGAGGCAACTGCCTGAAAATAAAGAATACATCACAATTT  237

seq1  ATAGTTACTTTCAT-AAGTCTGTCTTCTCTGACTTTCTCATCAGCAAGAA  293
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATAGTTACTTTCATAAAGTCTGTCTTCTCTGACTTTCTCATCAGCAAGAA  287

seq1  TAATGTAATACAGAACTCTCCAAGATCCCTCCCCCTGGAGAAAAAAAAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAATACAGAACTCTCCAAGATCCCTCCCCCTGGAGAAAAAAAAAA  337

seq1  CAGTTTTGAAGAGACAACTAATGAAGCAGCTATCTTACCTAAAACACAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGAAGAGACAACTAATGAAGCAGCTATCTTACCTAAAACACAAA  387

seq1  TAGCCGAACAGCTGTAGATGCAGCTCCATGTAAATCATTGACGTCAACTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGAACAGCTGTAGATGCAGCTCCATGTAAATCATTGACGTCAACTG  437

seq1  TGCCACCACAATGGTGATAAAAGCCAGGCACAGATGATAAGTCAGCCTAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACAATGGTGATAAAAGCCAGGCACAGATGATAAGTCAGCCTAG  487

seq1  AAACATAGGCAGGAAACGTGGAAAGGCCATAAGAACATCAGTAATTGGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGGCAGGAAACGTGGAAAGGCCATAAGAACATCAGTAATTGGTG  537

seq1  GCATTCTCACAAACCAACAGAACCAGATACCGGAATATTAGCACAAAGTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCACAAACCAACAGAACCAGATACCGGAATATTAGCACAAAGTA  587

seq1  CACGCTGGGGTCTGAACGTCTGAGCTGCATGTCCTCATTTCTTTGCCAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTGGGGTCTGAACGTCTGAGCTGCATGTCCTCATTTCTTTGCCAAG  637

seq1  ATATCGTGGGAAAATGGCTGAGGTTTATTCTTGTATGATCTAGGGCAGTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTGGGAAAATGGCTGAGGTTTATTCTTGTATGATCTAGGGCAGTG  687

seq1  GTTCTCAACCTTCCTAATGCTGTGACCCTTTAATACATACAGTTCATCAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAACCTTCCTAATGCTGTGACCCTTTAATACATACAGTTCATCAT  737

seq1  GATATGGTTATCCCCACCCCAACCATAAAATAGTTTCGTTGCTACTTCAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGTTATCCCCACCCCAACCATAAAATAGTTTCGTTGCTACTTCAT  787

seq1  AACGGTAATTTTGTTACCGTTATGAACCGTAATGTAAATATCTTATATGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTAATTTTGTTACCGTTATGAACCGTAATGTAAATATCTTATATGT  837

seq1  GACTCCCATGATGGTCATGACCCACAGGTTGAGAACCACTGATCTAGATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCATGATGGTCATGACCCACAGGTTGAGAACCACTGATCTAGATG  887

seq1  GACACTTTAAAACTAAGCTGTCCCTCCATTCTTCCTAAATTCGTCCTCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTAAAACTAAGCTGTCCCTCCATTCTTCCTAAATTCGTCCTCAG  937

seq1  CCCATTGCGGCTGATGAGTTTACAGTCCCTCTGTCTATAACATGCCTCCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGCGGCTGATGAGTTTACAGTCCCTCTGTCTATAACATGCCTCCC  987

seq1  ATGACTTTCCCTGTCTGGCTCCTCCCACCATTTAGGTCTTAGCTTAAACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTCCCTGTCTGGCTCCTCCCACCATTTAGGTCTTAGCTTAAACA  1037

seq1  ACAAGAATTC  1053
      ||||||||||
seq2  ACAAGAATTC  1047