BAC Information

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BAC

Clone NameB6Ng01-246I19
Chromosome11 (Build37)
Map Location 120,927,226 - 121,049,610
singlet/doubletdoublet
Overlap geneSectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik
Upstream geneAzi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b
Downstream geneHexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246I19.bB6Ng01-246I19.g
ACCGA055136GA055137
length8021,115
definitionB6Ng01-246I19.b B6Ng01-246I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,048,810 - 121,049,610)(120,927,226 - 120,928,346)
sequence
gaattccaggatagccagagctatgcagaaaaaccctgtctcaaaaaacc
aaaaaccaacataacccaaaccaaaatagaatcacaaaacaaaacaaaat
aaaacaaaacaaaaacccaaccaaccacacccactattctcctataaacc
accctcccccaccccctcctttcttcccttcctttctgtttctcagacac
ttactctttagtctgggctatactgtgtagcccagcctgtccttgaactt
ataatgatccttctcctatgtgctgggattataaattttaatattactaa
tttttttctttttacattccagctgtccacacatttgtaactaggagaaa
tgaatgttgtggtgtctgatgatagcagagatctgtcactttcccatgtg
aaagtcaattgcccagagaccattttaaaagtcacctggggtttccccac
taatctggggtgtcaatcacacaatttaccagttacacataaattcatat
gtgagtttctaagttctctcttctgttctaatatgtttactttatgacac
gtggatgggtgttttgcctacatatatgtccatgcagcacatgtgtgccc
acaagggccagaagatggtgcactggagcttaaaatagctgtgagccacc
atatagatgctgggaattgaacccaggttctccagaagatcaggtagtgt
tcttaactactgagccatccacctcctggttttttttctgtttctgattt
acattgtatttatttggggcatgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gt
gaattctatgtcctgagcgacttctgtctttgaccttgacagagaggacc
aggatagggagcaccgtgggactggcattcactaatccccaacagacaga
acctggaaagacaggagccataggggtgggaagagtggagacctctgact
cagtttccttctgggattcctgtagcttcaggggacagagggacttcgtg
gtcttggaagcttccccttttcagtagaggttcagaaattacttttaatg
gagcttcctgcatcagcacctgtgactggttgaggaaacacatgacaagc
ttcagagaccaggacacatagggccctgagcctaagtgtgcaaggagacc
gggagctaatgggctacaacaagacccgtggctgtcatcattcgatttga
ttacctttagaatgaccgtgaatcacctctccatatgtctatgccagtat
ttccacaaacatttaactgaggaggatgtgggtagcagcaccctatgggc
tgggattagaattccaaattgaacagcaagacaagtgtggtggcctacac
cttgcatcccagcacttgggaggcagaggcaggtgaaactctgtgagttc
aaggccagcctgttctacacagtgagttccaggacaccagggatacacag
agaaaccttgtcttgaaaaaccaaaaaaggaaaagagacagcgagctgag
ctgagcaccggccctgggtttttctgtctcctgagagaacacgacgtttc
cagttgcttcaaggttttgccaccaggccttccccactgatagagcctgt
cctcaaactcagacaaagcaaccccttcttccttaagctgcctggatcgg
cttactttgacctgacaaggctttctgcatctgggtcacaggctggagcc
tcagaaacaccatgaaggctgactctggaggacacaggcaccaccactgc
tctcagctttcattcggttcagtgtgtgagaattctggtaagattttatg
tttttaacactgtatttcctgagtggggctcaggagtctggctgaagaag
agcccccagggatccagatctctctatgatcggattgtctcatcattatt
aaagattagagctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_121048810_121049610
seq2: B6Ng01-246I19.b_49_850 (reverse)

seq1  ACACACACACACACACACACACACACACACATGCCCCAAATAAATACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACATGCCCCAAATAAATACAAT  50

seq1  GT-AATCAGAAACAGAAAAAAAACCAGGAGGTGGATGGCTCAGTAGTTAA  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCAGAAACAGAAAAAAAACCAGGAGGTGGATGGCTCAGTAGTTAA  100

seq1  GAACACTACCTGATCTTCTGGAGAACCTGGGTTCAATTCCCAGCATCTAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTACCTGATCTTCTGGAGAACCTGGGTTCAATTCCCAGCATCTAT  150

seq1  ATGGTGGCTCACAGCTATTTTAAGCTCCAGTGCACCATCTTCTGGCCCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCTCACAGCTATTTTAAGCTCCAGTGCACCATCTTCTGGCCCTT  200

seq1  GTGGGCACACATGTGCTGCATGGACATATATGTAGGCAAAACACCCATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCACACATGTGCTGCATGGACATATATGTAGGCAAAACACCCATCC  250

seq1  ACGTGTCATAAAGTAAACATATTAGAACAGAAGAGAGAACTTAGAAACTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCATAAAGTAAACATATTAGAACAGAAGAGAGAACTTAGAAACTC  300

seq1  ACATATGAATTTATGTGTAACTGGTAAATTGTGTGATTGACACCCCAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAATTTATGTGTAACTGGTAAATTGTGTGATTGACACCCCAGAT  350

seq1  TAGTGGGGAAACCCCAGGTGACTTTTAAAATGGTCTCTGGGCAATTGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGGAAACCCCAGGTGACTTTTAAAATGGTCTCTGGGCAATTGACT  400

seq1  TTCACATGGGAAAGTGACAGATCTCTGCTATCATCAGACACCACAACATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGGGAAAGTGACAGATCTCTGCTATCATCAGACACCACAACATT  450

seq1  CATTTCTCCTAGTTACAAATGTGTGGACAGCTGGAATGTAAAAAGAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCCTAGTTACAAATGTGTGGACAGCTGGAATGTAAAAAGAAAAA  500

seq1  AATTAGTAATATTAAAATTTATAATCCCAGCACATAGGAGAAGGATCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTAATATTAAAATTTATAATCCCAGCACATAGGAGAAGGATCATT  550

seq1  ATAAGTTCAAGGACAGGCTGGGCTACACAGTATAGCCCAGACTAAAGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTCAAGGACAGGCTGGGCTACACAGTATAGCCCAGACTAAAGAGT  600

seq1  AAGTGTCTGAGAAACAGAAAGGAAGGGAAGAAAGGAGGGGGTGGGGGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTGAGAAACAGAAAGGAAGGGAAGAAAGGAGGGGGTGGGGGAGG  650

seq1  GTGGTTTATAGGAGAATAGTGGGTGTGGTTGGTTGGGTTTTTGTTTTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTATAGGAGAATAGTGGGTGTGGTTGGTTGGGTTTTTGTTTTGTT  700

seq1  TTATTTTGTTTTGTTTTGTGATTCTATTTTGGTTTGGGTTATGTTGGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTTTTGTTTTGTGATTCTATTTTGGTTTGGGTTATGTTGGTTT  750

seq1  TTGGTTTTTTGAGACAGGGTTTTTCTGCATAGCTCTGGCTATCCTGGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTGAGACAGGGTTTTTCTGCATAGCTCTGGCTATCCTGGAAT  800

seq1  TC  801
      ||
seq2  TC  802

seq1: chr11_120927226_120928346
seq2: B6Ng01-246I19.g_68_1182

seq1  GAATTCTATGTCCTGAGCGACTTCTGTCTTTGACCTTGACAGAGAGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTCCTGAGCGACTTCTGTCTTTGACCTTGACAGAGAGGACC  50

seq1  AGGATAGGGAGCACCGTGGGACTGGCATTCACTAATCCCCAACAGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGGGAGCACCGTGGGACTGGCATTCACTAATCCCCAACAGACAGA  100

seq1  ACCTGGAAAGACAGGAGCCATAGGGGTGGGAAGAGTGGAGACCTCTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAAAGACAGGAGCCATAGGGGTGGGAAGAGTGGAGACCTCTGACT  150

seq1  CAGTTTCCTTCTGGGATTCCTGTAGCTTCAGGGGACAGAGGGACTTCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTTCTGGGATTCCTGTAGCTTCAGGGGACAGAGGGACTTCGTG  200

seq1  GTCTTGGAAGCTTCCCCTTTTCAGTAGAGGTTCAGAAATTACTTTTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGAAGCTTCCCCTTTTCAGTAGAGGTTCAGAAATTACTTTTAATG  250

seq1  GAGCTTCCTGCATCAGCACCTGTGACTGGTTGAGGAAACACATGACAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCCTGCATCAGCACCTGTGACTGGTTGAGGAAACACATGACAAGC  300

seq1  TTCAGAGACCAGGACACATAGGGCCCTGAGCCTAAGTGTGCAAGGAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGACCAGGACACATAGGGCCCTGAGCCTAAGTGTGCAAGGAGACC  350

seq1  GGGAGCTAATGGGCTACAACAAGACCCGTGGCTGTCATCATTCGATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTAATGGGCTACAACAAGACCCGTGGCTGTCATCATTCGATTTGA  400

seq1  TTACCTTTAGAATGACCGTGAATCACCTCTCCATATGTCTATGCCAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTAGAATGACCGTGAATCACCTCTCCATATGTCTATGCCAGTAT  450

seq1  TTCCACAAACATTTAACTGAGGAGGATGTGGGTAGCAGCACCCTATGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAACATTTAACTGAGGAGGATGTGGGTAGCAGCACCCTATGGGC  500

seq1  TGGGATTAGAATTCCAAATTGAACAGCAAGACAAGTGTGGTGGCCTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAGAATTCCAAATTGAACAGCAAGACAAGTGTGGTGGCCTACAC  550

seq1  CTTGCATCCCAGCACTTGGGAGGCAGAGGCAGGTGAAACTCTGTGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATCCCAGCACTTGGGAGGCAGAGGCAGGTGAAACTCTGTGAGTTC  600

seq1  AAGGCCAGCCTGTTCTACACAGTGAGTTCCAGGACACCAGGGATACACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCCTGTTCTACACAGTGAGTTCCAGGACACCAGGGATACACAG  650

seq1  AGAAACCTTGTCTTGAAAAACCAAAAAAGGAAAAGAGACAGCGAGCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTGTCTTGAAAAACCAAAAAAGGAAAAGAGACAGCGAGCTGAG  700

seq1  CTGAGCACCGGCCCTGGGTTTTTCTGTCTCCTGAGAGAACACGACGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACCGGCCCTGGGTTTTTCTGTCTCCTGAGAGAACACGACGTTTC  750

seq1  CAGTTGCTTCAAGGTTTTGCCACCAGGCCTTCCCCACTGATAGAGCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTTCAAGGTTTTGCCACCAGGCCTTCCCCACTGATAGAGCCTGT  800

seq1  CCTCAAACTCAGACAAAGCAACCCCTTCTTCCTTAAGCTGCCTGGATCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTCAGACAAAGCAACCCCTTCTTCCTTAAGCTGCCTGGATCGG  850

seq1  CTTACTTTGACCTGACAAGGCTTTCTGCATCT-GGTCACAGGCTGGAGCC  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTACTTTGACCTGACAAGGCTTTCTGCATCTGGGTCACAGGCTGGAGCC  900

seq1  TCAGAAACACCATG-AGGCTGACTCTGGAGGACACAGGCACCACCACTGC  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAGAAACACCATGAAGGCTGACTCTGGAGGACACAGGCACCACCACTGC  950

seq1  TCTCAGCTTTCATTCGGGTTCCAGTGTGTGAGAATTCTGGTAGATTTTTA  998
      |||||||||||||||||  | |||||||||||||||||||||   |||||
seq2  TCTCAGCTTTCATTCGG--TTCAGTGTGTGAGAATTCTGGTAAGATTTTA  998

seq1  TGTTTTTAACAACTGTATTTCCTGAGTTGGGGCTCAGGAGTCT-GCTGAA  1047
      |||||||||| ||||||||||||||| |||||||||||||||| ||||||
seq2  TGTTTTTAAC-ACTGTATTTCCTGAG-TGGGGCTCAGGAGTCTGGCTGAA  1046

seq1  GAGAGGCCCCCAGGGAATCCCAAGAT-TCTCTATGATCTGATTGTCTCAT  1096
      ||   |||||||||| ||||  |||| ||||||||||| |||||||||||
seq2  GAAGAGCCCCCAGGG-ATCC--AGATCTCTCTATGATCGGATTGTCTCAT  1093

seq1  CATTTATTTAAAGATTAGTAGCTAG  1121
      ||||   ||||||||||| ||||||
seq2  CATT--ATTAAAGATTAG-AGCTAG  1115