BAC Information

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BAC

Clone NameB6Ng01-249C22
Chromosome11 (Build37)
Map Location 102,278,280 - 102,405,517
singlet/doubletdoublet
Overlap geneGrn, BC025575, Itga2b
Upstream geneAarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39
Downstream geneMdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249C22.bB6Ng01-249C22.g
ACCGA057068GA057069
length1,087717
definitionB6Ng01-249C22.b B6Ng01-249C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,404,430 - 102,405,517)(102,278,280 - 102,278,996)
sequence
gaattcactctgtagaccaggcctgcctctgcctcccgagtgctgggatc
aaaggcttgcctggcctgaggtatgtttctgttttcctaagttctgctac
agtttcgtcttgaaacactgtgtacttttgtttgtcttgctgcccttgct
gcccttgccacactagcactgccatttacacttaagtgaaagagactaaa
ggaattataaaccactatacagatactgaaagaagtcattgatagtacag
caaataccagaagctgtggtgttgattttcctctgattaaaaagcaaatt
tgaccttttgactgtggaactgtaaccaaatatgcttattgcatattcta
ttagagtagaaagtgcagtatgctcacgataaaaaacagtggtgcacgcc
tgtagtcacagcattcgggaggcagaggcaggtggatcttttagtttgag
gccagcctggtctacagagcaagttctaggacagctagggctacacagag
aaaccctgtctccaacacccctgtactctcaaaaagaaaaaggggtagta
tattgtattatattaattttatttggttcgtttgtttgtagacagtgtct
cactgtgtagccccaattgtcctggaactcgttttgtaggccaggctgac
cttcagtttccaaaaatctggtctggatttgccttccaggtgctgggatt
aaaagtatgcattaacatacctggcttttttttaaagatttattattatt
gctgttgtttatttattttggttttctgagacaaggcctctctgtgagtc
ctgactgttctggaaacctgctctgtagactagggtggtcttgaactcag
atatctccctatatctgcctctggaatgctggaaattaaaggcatgtgtt
gtcactttgtggctttctgttttgcagtgaactttatactaataaactat
gccattatatccagaatgtctagttttctctgacttttttttttccccga
aaatcggtttgtatagccaacactgttggctttagttttctttttcaaga
tagtttatgttattctcctttttgaaaagttcttttt
gaattccacacccctaagccccttaccccataaaaaaacccctagctttc
gagcctcgcggcagacatccattatctcctgtgtgggatacatgtcggtc
tggagctccgtaattaaacgacctcatgtaattacatcaagatggtcctt
tgtgattttttgggtgtacactgaatcgggaattgagtgggggtttcccc
actaggttctatcagagcaaagcaagttggggagggataagtcagcctac
acttccacatcactgttcatcaccaaaggaagtcaggacaggaactcaca
caggacagggacttggagtcaggagctgatgcagaggccatggagggatg
ctgcttactggcttcctcacctggcttgctcatcctgatgttttatagaa
cccaggaccaccagtgtagggagagcaccacccacaatgagatgggccct
cccccatcaatcattaattaacaagttgccctggtggtggtaggtgacag
ctgcagctgggtacaagtttaatctcagctctagggagacagaggcagat
gcaggtggatctctgtgagtttgagggtagcctgatctacggagctagtg
ccaagatagccagagctacaacaaaaatgagagagagagagagagagaga
gatatgagaaagagacatgagagagaggagagagaggagagaaatgagag
agagagagggagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102404430_102405517
seq2: B6Ng01-249C22.b_49_1135 (reverse)

seq1  AAAAAGAAATGTCTCAAAAAGAAGAA-AACATAAAACCTATCTTTGAAAA  49
      |||||||| | | |||||||| |||| ||||||||  ||||| |||||||
seq2  AAAAAGAACT-TTTCAAAAAGGAGAATAACATAAA--CTATC-TTGAAAA  46

seq1  AGAAAACTAAGCCAAACAATGGTGGGCTATACAAACCGTTTTTTGGGG-A  98
      ||||||||||  | |||| | || |||||||||||||| |||| |||| |
seq2  AGAAAACTAAAGCCAACAGT-GTTGGCTATACAAACCGATTTTCGGGGAA  95

seq1  AAAAAAAAGTCAGAGAAAACTAGACATTCTGGATATTAATGGCATAGTTT  148
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AAAAAAAAGTCAGAGAAAACTAGACATTCTGGATA-TAATGGCATAG-TT  143

seq1  TATTAGTATAAAGTTCACTGC-AAACAG-AAGCCACAAAGTGACAACACA  196
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  TATTAGTATAAAGTTCACTGCAAAACAGAAAGCCACAAAGTGACAACACA  193

seq1  TGCCTTTAA-TTCCAGCATTCCAGAGGCAGATATAGGGAGATATCTGAGT  245
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATTTCCAGCATTCCAGAGGCAGATATAGGGAGATATCTGAGT  243

seq1  TCAAGACCACCCTAGTCTACAGAGCAGG-TTCCAGAACAGTCAGGACTCA  294
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAAGACCACCCTAGTCTACAGAGCAGGTTTCCAGAACAGTCAGGACTCA  293

seq1  CAGAGAGGCCTTGTCTCAGAAAACCAAAATAAATAAACAACAGCAATAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGCCTTGTCTCAGAAAACCAAAATAAATAAACAACAGCAATAAT  343

seq1  AATAAATCTTTAAAAAAAAGCCAGGTATGTTAATGCATACTTTTAATCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTTAAAAAAAAGCCAGGTATGTTAATGCATACTTTTAATCCC  393

seq1  AGCACCTGGAAGGCAAATCCAGACCAGATTTTTGGAAACTGAAGGTCAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGGAAGGCAAATCCAGACCAGATTTTTGGAAACTGAAGGTCAGC  443

seq1  CTGGCCTACAAAACGAGTTCCAGGACAATTGGGGCTACACAGTGAGACAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTACAAAACGAGTTCCAGGACAATTGGGGCTACACAGTGAGACAC  493

seq1  TGTCTACAAACAAACGAACCAAATAAAATTAATATAATACAATATACTAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACAAACAAACGAACCAAATAAAATTAATATAATACAATATACTAC  543

seq1  CCCTTTTTCTTTTTGAGAGTACAGGGGTGTTGGAGACAGGGTTTCTCTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTCTTTTTGAGAGTACAGGGGTGTTGGAGACAGGGTTTCTCTGT  593

seq1  GTAGCCCTAGCTGTCCTAGAACTTGCTCTGTAGACCAGGCTGGCCTCAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTAGCTGTCCTAGAACTTGCTCTGTAGACCAGGCTGGCCTCAAA  643

seq1  CTAAAAGATCCACCTGCCTCTGCCTCCCGAATGCTGTGACTACAGGCGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGATCCACCTGCCTCTGCCTCCCGAATGCTGTGACTACAGGCGTG  693

seq1  CACCACTGTTTTTTATCGTGAGCATACTGCACTTTCTACTCTAATAGAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGTTTTTTATCGTGAGCATACTGCACTTTCTACTCTAATAGAAT  743

seq1  ATGCAATAAGCATATTTGGTTACAGTTCCACAGTCAAAAGGTCAAATTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATAAGCATATTTGGTTACAGTTCCACAGTCAAAAGGTCAAATTTG  793

seq1  CTTTTTAATCAGAGGAAAATCAACACCACAGCTTCTGGTATTTGCTGTAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAATCAGAGGAAAATCAACACCACAGCTTCTGGTATTTGCTGTAC  843

seq1  TATCAATGACTTCTTTCAGTATCTGTATAGTGGTTTATAATTCCTTTAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGACTTCTTTCAGTATCTGTATAGTGGTTTATAATTCCTTTAGT  893

seq1  CTCTTTCACTTAAGTGTAAATGGCAGTGCTAGTGTGGCAAGGGCAGCAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCACTTAAGTGTAAATGGCAGTGCTAGTGTGGCAAGGGCAGCAAG  943

seq1  GGCAGCAAGACAAACAAAAGTACACAGTGTTTCAAGACGAAACTGTAGCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAAGACAAACAAAAGTACACAGTGTTTCAAGACGAAACTGTAGCA  993

seq1  GAACTTAGGAAAACAGAAACATACCTCAGGCCAGGCAAGCCTTTGATCCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGGAAAACAGAAACATACCTCAGGCCAGGCAAGCCTTTGATCCC  1043

seq1  AGCACTCGGGAGGCAGAGGCAGGCCTGGTCTACAGAGTGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCGGGAGGCAGAGGCAGGCCTGGTCTACAGAGTGAATTC  1087

seq1: chr11_102278280_102278996
seq2: B6Ng01-249C22.g_66_782

seq1  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAAAACCCCTAGCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAAAACCCCTAGCTTTC  50

seq1  GAGCCTCGCGGCAGACATCCATTATCTCCTGTGTGGGATACATGTCGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCGCGGCAGACATCCATTATCTCCTGTGTGGGATACATGTCGGTC  100

seq1  TGGAGCTCCGTAATTAAACGACCTCATGTAATTACATCAAGATGGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCCGTAATTAAACGACCTCATGTAATTACATCAAGATGGTCCTT  150

seq1  TGTGATTTTTTGGGTGTACACTGAATCGGGAATTGAGTGGGGGTTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTTTGGGTGTACACTGAATCGGGAATTGAGTGGGGGTTTCCCC  200

seq1  ACTAGGTTCTATCAGAGCAAAGCAAGTTGGGGAGGGATAAGTCAGCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTTCTATCAGAGCAAAGCAAGTTGGGGAGGGATAAGTCAGCCTAC  250

seq1  ACTTCCACATCACTGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACATCACTGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACA  300

seq1  CAGGACAGGGACTTGGAGTCAGGAGCTGATGCAGAGGCCATGGAGGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGGACTTGGAGTCAGGAGCTGATGCAGAGGCCATGGAGGGATG  350

seq1  CTGCTTACTGGCTTCCTCACCTGGCTTGCTCATCCTGATGTTTTATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACTGGCTTCCTCACCTGGCTTGCTCATCCTGATGTTTTATAGAA  400

seq1  CCCAGGACCACCAGTGTAGGGAGAGCACCACCCACAATGAGATGGGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACCACCAGTGTAGGGAGAGCACCACCCACAATGAGATGGGCCCT  450

seq1  CCCCCATCAATCATTAATTAACAAGTTGCCCTGGTGGTGGTAGGTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCAATCATTAATTAACAAGTTGCCCTGGTGGTGGTAGGTGACAG  500

seq1  CTGCAGCTGGGTACAAGTTTAATCTCAGCTCTAGGGAGACAGAGGCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGGGTACAAGTTTAATCTCAGCTCTAGGGAGACAGAGGCAGAT  550

seq1  GCAGGTGGATCTCTGTGAGTTTGAGGGTAGCCTGATCTACGGAGCTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATCTCTGTGAGTTTGAGGGTAGCCTGATCTACGGAGCTAGTG  600

seq1  CCAAGATAGCCAGAGCTACAACAAAAATGAGAGAGAGAGAGAGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAGCCAGAGCTACAACAAAAATGAGAGAGAGAGAGAGAGAGAGA  650

seq1  GATATGAGAAAGAGACATGAGAGAGAGGAGAGAGAGGAGAGAAATGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAGAAAGAGACATGAGAGAGAGGAGAGAGAGGAGAGAAATGAGAG  700

seq1  AGAGAGAGGGAGAGAGA  717
      |||||||||||||||||
seq2  AGAGAGAGGGAGAGAGA  717