BAC Information

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BAC

Clone NameB6Ng01-250L18
Chromosome11 (Build37)
Map Location 4,074,902 - 4,075,995
singlet/doubletsinglet
Overlap geneSf3a1
Upstream geneSfi1, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik
Downstream geneTbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250L18.bB6Ng01-250L18.g
ACCGA058198GA058199
length1,2451,081
definitionB6Ng01-250L18.b B6Ng01-250L18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatcaattgggaaatgagcattttaatatatgagcctatggggc
attctcattcaaaccaccacaatccacatcttgacccccctaagccatat
cataatacaaaatgcaattaccccagcttcaaaactccccatagtctttc
tcactttcaacactgtttaaaagtccagagtccaaagcctcttttgagac
tcaaggctatttattaattgtaactccctttaaaatcaaagaccagatta
tgtacttccaacataccatggcacagaatatacattgctattccaaaatg
gaataaaggggtgtagtgaggaaacactgaaagaccaaacccagcagggc
aaactccaaaggcagtagctccatgtctgatgtcaggggcttagatggct
ctgcccttccagctttgctgcctgcaacacacatctctctctggctggtc
ccacatcctgtctgcagctctccttagcagacatcgcccaatgcttgcat
ctctggaacctcagagaaatccaagcttcactttcacagtttctcttggg
tcctccatgaagagactcctctgccatgaagagactcttctgccacaggc
ttggcctcagtgactttccttaactgtagaggaagattccacaaccccct
tactctctatccttcaggactctaaagccagaaccggatgctgccaagtt
tgactacttgcttgggatggattgggtcccattcttggatcacatttgta
caagtttgattttgttgttgctctttgggaacaggaaattccataagcct
tttctttttgtaaatgggaggcttggctgatggcatcttgccccgagtcc
cccctcccttcattctatttcagattaggcctctccttaatctccttccc
tctttcagcataagccttggctccgacgttaaacttcccagtgccctgta
ctcctcagactgaatgctttaaaaaaaaaaaaaaagatgtatttatttat
tatgtgagtataactgtagcttatcttcagacactccaagaggaaggcat
cagaatcctcattatggatgggtgtggagccaccaatgtagttgcttggg
gtttggactccaggaccctcagaagagcaaggtcagtgcttctaaccact
ggagccatctcctttcaggccagaactgaatgcttgtaccttctttttgc
cttactttgcctcttttttttaaatgtgtaagggctcgtgcgcta
gaattctcttaagcagaccaggctggcctcgaacttacagagatccaact
gcctctggctccagagtgctgggctaaaggtgtgcaccacctcatccagt
cctatccttctgctttatacttggcagtgagactaattagtgagtgtcac
tcaaggagctttaaccacaagttcaaaagaacaaaggaataaatattccg
attgctagatcttgttattggataccagcagacaagtgacatccctgcca
gtgccagattttggaggattcctctacagtgtcctgggaaatacatacat
cctttgcaatatcataggctatacctacctacctcccaaactctcattga
ccgaaaccattttgtatctgcataaaagaagctacaggctgggagcctcc
atcccatctcacctggtgcataaacctcatcatcactctgcttctctcgg
atggagcggtcccgctgctccagccagcgggggtcaagaagcccaatgcg
catgtgctcctgcattttgctggcaggaatcttctccccagtgatggggg
atacaagatactcatcgggagcaggggctggagggaggggcttggaagct
agaggaaacagatgtctaagtaagaatactgggttaagaaagcggtgtat
tcagacatcgttcacggaaaacatccactcattaccacgtgaacctggag
atgactgcactctttcccaccatgaggcctgtaacatacgggccacctca
aactctcctagaaacagcccatctgaaaagcacataaaaccaaccacgac
tctctttaatataacaaggactgggaggcaggaccgtacctttgggatca
tagtccttccgcacaatgacttggtctggtgttgggggcagaggtggagg
catgggttgtctctgggggtggaggcactttctgccttcttctcatcatc
tgaaccctaaaaagcaaagcaatgtcacactcagaatgaaagccaccttc
caaagctcaaaaccactgcagctctcaggtggcaaggagctagtcctgca
gcagttccccgtgctagtctctggggcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4074902_4075995
seq2: B6Ng01-250L18.g_69_1149 (reverse)

seq1  AGCTGCCCCAGGAGACTTAGCACGGGGACTGGCTGGCAGGGACTAAGGCT  50
      |||||||||| ||||| |||||||||||   ||| ||| ||||||  |||
seq2  AGCTGCCCCA-GAGAC-TAGCACGGGGAACTGCT-GCA-GGACTA--GCT  44

seq1  CCTTGCCACCCTGAGAGCTGCCAGTGGTTTTGAGCTTTGGGAGGTGGCCT  100
      |||||||| ||||||||||| ||||||||||||||||||| |||||| ||
seq2  CCTTGCCA-CCTGAGAGCTG-CAGTGGTTTTGAGCTTTGGAAGGTGG-CT  91

seq1  TTCATTTCCTGAGTTGTGACATTGCTTTGCTTTTTAGGGTTCAGATGATG  150
      ||||||  ||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCATT--CTGAG-TGTGACATTGCTTTGCTTTTTAGGGTTCAGATGATG  138

seq1  AAGAAGAAGGGCAGAAAGTGCCTCCACCCCCAGAGAC-ACCCATGCCTCC  199
       ||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  -AGAAGAA-GGCAGAAAGTGCCTCCACCCCCAGAGACAACCCATGCCTCC  186

seq1  ACCTCTGCCCCCAACACCAGACCAAGTCATTGTGCGGAAGGACTATGATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCCCCCAACACCAGACCAAGTCATTGTGCGGAAGGACTATGATC  236

seq1  CCAAAGGTACGGTCCTGCCTCCCAGTCCTTGTTATATTAAAGAGAGTCGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGTACGGTCCTGCCTCCCAGTCCTTGTTATATTAAAGAGAGTCGT  286

seq1  GGTTGGTTTTATGTGCTTTTCAGATGGGCTGTTTCTAGGAGAGTTTGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTTTATGTGCTTTTCAGATGGGCTGTTTCTAGGAGAGTTTGAGG  336

seq1  TGGCCCGTATGTTACAGGCCTCATGGTGGGAAAGAGTGCAGTCATCTCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCGTATGTTACAGGCCTCATGGTGGGAAAGAGTGCAGTCATCTCCA  386

seq1  GGTTCACGTGGTAATGAGTGGATGTTTTCCGTGAACGATGTCTGAATACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACGTGGTAATGAGTGGATGTTTTCCGTGAACGATGTCTGAATACA  436

seq1  CCGCTTTCTTAACCCAGTATTCTTACTTAGACATCTGTTTCCTCTAGCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTTCTTAACCCAGTATTCTTACTTAGACATCTGTTTCCTCTAGCTT  486

seq1  CCAAGCCCCTCCCTCCAGCCCCTGCTCCCGATGAGTATCTTGTATCCCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCCTCCCTCCAGCCCCTGCTCCCGATGAGTATCTTGTATCCCCC  536

seq1  ATCACTGGGGAGAAGATTCCTGCCAGCAAAATGCAGGAGCACATGCGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGGGGAGAAGATTCCTGCCAGCAAAATGCAGGAGCACATGCGCAT  586

seq1  TGGGCTTCTTGACCCCCGCTGGCTGGAGCAGCGGGACCGCTCCATCCGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCTTGACCCCCGCTGGCTGGAGCAGCGGGACCGCTCCATCCGAG  636

seq1  AGAAGCAGAGTGATGATGAGGTTTATGCACCAGGTGAGATGGGATGGAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGAGTGATGATGAGGTTTATGCACCAGGTGAGATGGGATGGAGG  686

seq1  CTCCCAGCCTGTAGCTTCTTTTATGCAGATACAAAATGGTTGCGGTCAAT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCCCAGCCTGTAGCTTCTTTTATGCAGATACAAAATGGTTTCGGTCAAT  736

seq1  GAGAGTTTGGGAGGTAGGTAGGTATAGCCTATGATATTGCAAAGGATGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTGGGAGGTAGGTAGGTATAGCCTATGATATTGCAAAGGATGTA  786

seq1  TGTATTTCCCAGGACACTGTAGAGGAATCCTCCAAAATCTGGCACTGGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCCCAGGACACTGTAGAGGAATCCTCCAAAATCTGGCACTGGCA  836

seq1  GGGATGTCACTTGTCTGCTGGTATCCAATAACAAGATCTAGCAATCGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTCACTTGTCTGCTGGTATCCAATAACAAGATCTAGCAATCGGAA  886

seq1  TATTTATTCCTTTGTTCTTTTGAACTTGTGGTTAAAGCTCCTTGAGTGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTCCTTTGTTCTTTTGAACTTGTGGTTAAAGCTCCTTGAGTGAC  936

seq1  ACTCACTAATTAGTCTCACTGCCAAGTATAAAGCAGAAGGATAGGACTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTAATTAGTCTCACTGCCAAGTATAAAGCAGAAGGATAGGACTGG  986

seq1  ATGAGGTGGTGCACACCTTTAGCCCAGCACTCTGGAGCCAGAGGCAGTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGGTGCACACCTTTAGCCCAGCACTCTGGAGCCAGAGGCAGTTG  1036

seq1  GATCTCTGTAAGTTCGAGGCCAGCCTGGTCTGCTTAAGAGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGTAAGTTCGAGGCCAGCCTGGTCTGCTTAAGAGAATTC  1081