BAC Information

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BAC

Clone NameB6Ng01-252A15
Chromosome11 (Build37)
Map Location 120,434,941 - 120,603,039
singlet/doubletdoublet
Overlap geneArhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2
Upstream gene4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb
Downstream geneHmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252A15.bB6Ng01-252A15.g
ACCGA059145GA059146
length1,092427
definitionB6Ng01-252A15.b B6Ng01-252A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,434,941 - 120,436,024)(120,602,607 - 120,603,039)
sequence
gtgcccgagacctctgcggaagctgctggggaagtggagaaagcagtccg
tgccgtccgctttatactgaccacatgttgaaatggctcttgagttcgtt
gggctgaataataaaaaggtttggcttctgtgaatcagcctttccattac
gtacgagagtcacattttgtctcggttggacttccttttccagaatcatc
ttctactttgtgtctctatcccttagtgacttggaactcattgtacacag
gctggcctggaacccgaggaaatacttaaaagatctgcaccggcccactg
ggtgctgtagttacagctgtgagcagtccctgtccgtgttcggtccatct
ttctctttctttactgctccccggctgtcaaccgacctgctctccacgcc
cagcccgggagctcactcctagaagcatcttcttttttcacttcccacta
cgaaaactatcctgattgtcaagggtcattagaaaaggcaaacacccaaa
tattaagtatatagattgactagtactacactgctctcagaaatggataa
aaaacaagaaatatggcatatggttttgtattttgatagttttttttttt
ttaattgtttttagtttttcaagacagtgttttcctgtatagccctggaa
ctcgatagacaccaacctggccttggactcagagatccatttacctctgc
ctcctcagagtgctggcatcaaagatgtgtgccatcactgcctggcagta
gcttctttagcaacgttgtcataaggacatgcatgtattacctttcctac
tagaaactcctcttatctagtgtgagtttcttcccttgaagaccaagtcc
tttgtgccccaacccattcagtgtaggcagagagggagttcagatcctgg
gtcggagctcacctgggaaactttcgagtattattacgtgatgacttttg
cagccttaggagagctaatgattgaattttgccctggagagtactaatct
agcagcagcttggctaggtgccttggtttttcctcgcctatccttagtgc
cctgttcacattctcggacttgggtacataaagaaatagctt
atctgcgccccttgggaagggaccatcgtctgggcttgttgactgttcac
agcccctcgtggaggggtggggggagccatgagagcttcaactggaggtt
gaagaagggcaggaattatgtcaggatgtacgcttgtccctgattggatg
aacaacactgaaagtgcattgccttgggtttggcctttataggcacctga
ctgatttaatccagtgccactcttcgggaatccagtcccagctatggacc
tggccagtgtcggtcttcctggacactatcaaataaagcttgctttaact
gtatagtcatggacttggtccttcttctagacagcgacaggtttaacatt
tgcttgcaaccgtgtcttagttgtatgtggcctaagggaggggccatggg
agactaggattggggggtgaggggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120434941_120436024
seq2: B6Ng01-252A15.b_51_1142

seq1  GTGCCCGAGACCTCTGCGGAAGCTGCTGGGGAAGTGGAGAAAGCAGTCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGAGACCTCTGCGGAAGCTGCTGGGGAAGTGGAGAAAGCAGTCCG  50

seq1  TGCCGTCCGCTTTATACTGACCACATGTTGAAATGGCTCTTGAGTTCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTCCGCTTTATACTGACCACATGTTGAAATGGCTCTTGAGTTCGTT  100

seq1  GGGCTGAATAATAAAAAGGTTTGGCTTCTGTGAATCAGCCTTTCCATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAATAATAAAAAGGTTTGGCTTCTGTGAATCAGCCTTTCCATTAC  150

seq1  GTACGAGAGTCACATTTTGTCTCGGTTGGACTTCCTTTTCCAGAATCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGAGAGTCACATTTTGTCTCGGTTGGACTTCCTTTTCCAGAATCATC  200

seq1  TTCTACTTTGTGTCTCTATCCCTTAGTGACTTGGAACTCATTGTACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTGTGTCTCTATCCCTTAGTGACTTGGAACTCATTGTACACAG  250

seq1  GCTGGCCTGGAACCCGAGGAAATACTTAAAAGATCTGCACCGGCCCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTGGAACCCGAGGAAATACTTAAAAGATCTGCACCGGCCCACTG  300

seq1  GGTGCTGTAGTTACAGCTGTGAGCAGTCCCTGTCCGTGTTCGGTCCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTAGTTACAGCTGTGAGCAGTCCCTGTCCGTGTTCGGTCCATCT  350

seq1  TTCTCTTTCTTTACTGCTCCCCGGCTGTCAACCGACCTGCTCTCCACGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCTTTACTGCTCCCCGGCTGTCAACCGACCTGCTCTCCACGCC  400

seq1  CAGCCCGGGAGCTCACTCCTAGAAGCATCTTCTTTTTTCACTTCCCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCGGGAGCTCACTCCTAGAAGCATCTTCTTTTTTCACTTCCCACTA  450

seq1  CGAAAACTATCCTGATTGTCAAGGGTCATTAGAAAAGGCAAACACCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAACTATCCTGATTGTCAAGGGTCATTAGAAAAGGCAAACACCCAAA  500

seq1  TATTAAGTATATAGATTGACTAGTACTACACTGCTCTCAGAAATGGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTATATAGATTGACTAGTACTACACTGCTCTCAGAAATGGATAA  550

seq1  AAAACAAGAAATATGGCATATGGTTTTGTATTTTGATAGTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGAAATATGGCATATGGTTTTGTATTTTGATAGTTTTTTTTTTT  600

seq1  TTAATTGTTTTTAGTTTTTCAAGACAGTGTTTTCCTGTATAGCCCTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTTTTTAGTTTTTCAAGACAGTGTTTTCCTGTATAGCCCTGGAA  650

seq1  CTCGATAGACACCAACCTGGCCTTGGACTCAGAGATCCATTTACCTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATAGACACCAACCTGGCCTTGGACTCAGAGATCCATTTACCTCTGC  700

seq1  CTCCTCAGAGTGCTGGCATCAAAGATGTGTGCCATCACTGCCTGGCAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAGTGCTGGCATCAAAGATGTGTGCCATCACTGCCTGGCAGTA  750

seq1  GCTTCTTTAGCAACGTTGTCAATAAGGACATGCATGTATTACCTTTCCTA  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCTTCTTTAGCAACGTTGTC-ATAAGGACATGCATGTATTACCTTTCCTA  799

seq1  CTAGAAACTCCTCTTATCTAGTGTGAGTTTCTTCCCTTGAAGACCAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACTCCTCTTATCTAGTGTGAGTTTCTTCCCTTGAAGACCAAGTC  849

seq1  CTTTGTGCCCCAACCCATTCAGTGTAGGCAGAGAGGGAG-TCAGATCCT-  898
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  CTTTGTGCCCCAACCCATTCAGTGTAGGCAGAGAGGGAGTTCAGATCCTG  899

seq1  GGTCGGAGCTCA-CTGGGAAACCTTCGAGTAT--ATACGGGATGAC-TTT  944
      |||||||||||| ||||||||| |||||||||   |||| |||||| |||
seq2  GGTCGGAGCTCACCTGGGAAACTTTCGAGTATTATTACGTGATGACTTTT  949

seq1  GCAGGCCTAGGAGAGCT-ATGAATGAA-TTTGCCCTGGAAGAGTACCTAA  992
      |||| | |||||||||| |||| |||| |||||||||| |||||| ||||
seq2  GCAGCCTTAGGAGAGCTAATGATTGAATTTTGCCCTGG-AGAGTA-CTAA  997

seq1  TCTAGCAGCAGCTTGGCTAGGTG-CTTGGTTTTTTCTCTGCCTATCTTTA  1041
      ||||||||||||||||||||||| |||||||||| ||| ||||||| |||
seq2  TCTAGCAGCAGCTTGGCTAGGTGCCTTGGTTTTTCCTC-GCCTATCCTTA  1046

seq1  GTG-CCTGTACACATTC-CTGACTTGGGTACA-ATAGAAATAGCTT  1084
      ||| ||||| ||||||| | |||||||||||| | |||||||||||
seq2  GTGCCCTGTTCACATTCTCGGACTTGGGTACATAAAGAAATAGCTT  1092

seq1: chr11_120602607_120603039
seq2: B6Ng01-252A15.g_69_501 (reverse)

seq1  CATCCCCTCACCCCCCAATCCTAGTCTCCCATGGCCCCTCCCTTAGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTCACCCCCCAATCCTAGTCTCCCATGGCCCCTCCCTTAGGCCA  50

seq1  CATACAACTAAGACACGGTTGCAAGCAAATGTTAAACCTGTCGCTGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAACTAAGACACGGTTGCAAGCAAATGTTAAACCTGTCGCTGTCTA  100

seq1  GAAGAAGGACCAAGTCCATGACTATACAGTTAAAGCAAGCTTTATTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGACCAAGTCCATGACTATACAGTTAAAGCAAGCTTTATTTGAT  150

seq1  AGTGTCCAGGAAGACCGACACTGGCCAGGTCCATAGCTGGGACTGGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCAGGAAGACCGACACTGGCCAGGTCCATAGCTGGGACTGGATTC  200

seq1  CCGAAGAGTGGCACTGGATTAAATCAGTCAGGTGCCTATAAAGGCCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGAGTGGCACTGGATTAAATCAGTCAGGTGCCTATAAAGGCCAAAC  250

seq1  CCAAGGCAATGCACTTTCAGTGTTGTTCATCCAATCAGGGACAAGCGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCAATGCACTTTCAGTGTTGTTCATCCAATCAGGGACAAGCGTAC  300

seq1  ATCCTGACATAATTCCTGCCCTTCTTCAACCTCCAGTTGAAGCTCTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACATAATTCCTGCCCTTCTTCAACCTCCAGTTGAAGCTCTCATG  350

seq1  GCTCCCCCCACCCCTCCACGAGGGGCTGTGAACAGTCAACAAGCCCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCCCACCCCTCCACGAGGGGCTGTGAACAGTCAACAAGCCCAGAC  400

seq1  GATGGTCCCTTCCCAAGGGGCGCAGATGAATTC  433
      |||||||||||||||||||||||||||||||||
seq2  GATGGTCCCTTCCCAAGGGGCGCAGATGAATTC  433