BAC Information

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BAC

Clone NameB6Ng01-253G21
Chromosome11 (Build37)
Map Location 88,519,050 - 88,520,118
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253G21.bB6Ng01-253G21.g
ACCGA060164GA060165
length1,0411,070
definitionB6Ng01-253G21.b B6Ng01-253G21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataccctcttctggtctctcaggacattccatgcatgtgatgc
acagacgcccatacatatagaatacaaataaataaatctttaaaagctca
cacctcctgggatagtcacactttcgactcatagttaagttgagcagaaa
gcagaagtttctcacattaccccatccccgggcttgcccagacaccatga
tttaacagcaacgtctcaccccagattgttaccgtggttacaatggataa
accagctgagccaatcagttgaagtccatagatcaaactgagattcaact
ttgagttgtgtgcctgtgcctgtgcatgcatatgtgcgtctgtgtgtgtg
ttttgagcatgtgcgatgtatgtgtgcggtgtgtggtttattttgttttg
aggcagggcagggactcattatgcagccctggctggctagcaccctttat
gtaagccaggggtacctcaaactcacctcttgagcatggagatttgagat
gtgcatcaccatgctgggcccgttcatgggcttcgcactttttggggact
tttgatgacttcacgtatccatctttaaagtatcagacagaaaagtttca
ctgtcttgagttttgtgtgctttccagcccctcccccatccagagcaact
gctgatctttccactgtgtcatggctgttccttttcccgcacacggtaca
gctggaatcccgtttgggcaaccacacacctcctatatgtcattcttttt
cttgcttgaatgatattccattgtatagatataccacaaccattcatcca
cttacttgatggctgccattaggtaagtggtttccttcttttgtgtattg
tgaggagtgttgttatgaacacttttgaaactttggtttgagtgaaagct
gaacccattttctgttctttgagtcatacgggaactctatgcttaaccat
gtagaaaactgcccgggcgtggtggcgcacgccttaatcccggcacttgg
ggaggcagaggcaagccagattttcttggggtccaaggcca
gaattcaaacaacatccctccctcccagcaatgagacctaagatagctcc
tgaagcagcaggtgcctggacctcagggcccaatgagtgtcttcctgcag
gaccactacatgaatgacaaatggaagtgcataaggtgttaagaacagag
cctggtaatcaacgcatgcctaataacactaataagcattggggacaatt
atcctttcacccaggacactcttagggctattcgttcttacgttaccagt
tgctcctgaagacactaaggaaatataaatcattgctcaagacatggtcc
accagtccttactaggaatgcgaagatgccaacttgaacaggcagtctag
aattctttatccaaggcttgcattttggaggtttctgatttcggacaggc
aacaagatgtgtgcatcgtattctacagcacccacctccctgctctgcct
gcttctactcaaagacattagaagtttttcagaaaaatccatgtaccctc
atagtcagcaggatggagacgccatatagtctgaggacaggcaggtcaga
ttctgtagcccacggagttatagaaaagctgaggccgtgacacgctagac
ctgtagccacggggtaacacggaggcaggaactgtagaaagggggactag
gcaagtaactagggtaagactaaggacaggctcagttaacacctgaagaa
gaaacaagagcctcctgagagaaaggctctctctggcagaggctgcagca
gatgcaaaggagaaccttctagaacggcatcaaccataatggacacccaa
gaggccatgcaaggcaacaagaaagctgacaaatgaggctagggtcagag
tctggtgactgagaccatactaaaggacctccccttaaaactgtggctca
accagtactttaaaaaagaatatgatagccgggtgtggtggcgcacgccc
tttagtcccagcactcggggagcagagtcagcgatttctgagttcgagca
gcctggtctacaagtgagttccaggacagtcaggcttacacagagaaaca
ctgtctcgtaaatcaaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88519050_88520118
seq2: B6Ng01-253G21.g_65_1134

seq1  GAATTCAAACAACATCCCTCCCTCCCAGCAATGAGACCTAAGATAGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAACATCCCTCCCTCCCAGCAATGAGACCTAAGATAGCTCC  50

seq1  TGAAGCAGCAGGTGCCTGGACCTCAGGGCCCAATGAGTGTCTTCCTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGCAGGTGCCTGGACCTCAGGGCCCAATGAGTGTCTTCCTGCAG  100

seq1  GACCACTACATGAATGACAAATGGAAGTGCATAAGGTGTTAAGAACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTACATGAATGACAAATGGAAGTGCATAAGGTGTTAAGAACAGAG  150

seq1  CCTGGTAATCAACGCATGCCTAATAACACTAATAAGCATTGGGGACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAATCAACGCATGCCTAATAACACTAATAAGCATTGGGGACAATT  200

seq1  ATCCTTTCACCCAGGACACTCTTAGGGCTATTCGTTCTTACGTTACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCACCCAGGACACTCTTAGGGCTATTCGTTCTTACGTTACCAGT  250

seq1  TGCTCCTGAAGACACTAAGGAAATATAAATCATTGCTCAAGACATGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGAAGACACTAAGGAAATATAAATCATTGCTCAAGACATGGTCC  300

seq1  ACCAGTCCTTACTAGGAATGCGAAGATGCCAACTTGAACAGGCAGTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCCTTACTAGGAATGCGAAGATGCCAACTTGAACAGGCAGTCTAG  350

seq1  AATTCTTTATCCAAGGCTTGCATTTTGGAGGTTTCTGATTTCGGACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTATCCAAGGCTTGCATTTTGGAGGTTTCTGATTTCGGACAGGC  400

seq1  AACAAGATGTGTGCATCGTATTCTACAGCACCCACCTCCCTGCTCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATGTGTGCATCGTATTCTACAGCACCCACCTCCCTGCTCTGCCT  450

seq1  GCTTCTACTCAAAGACATTAGAAGTTTTTCAGAAAAATCCATGTACCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACTCAAAGACATTAGAAGTTTTTCAGAAAAATCCATGTACCCTC  500

seq1  ATAGTCAGCAGGATGGAGACGCCATATAGTCTGAGGACAGGCAGGTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGCAGGATGGAGACGCCATATAGTCTGAGGACAGGCAGGTCAGA  550

seq1  TTCTGTAGCCCACGGAGTTATAGAAAAGCTGAGGCCGTGACACGCTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGCCCACGGAGTTATAGAAAAGCTGAGGCCGTGACACGCTAGAC  600

seq1  CTGTAGCCACGGGGTAACACGGAGGCAGGAACTGTAGAAAGGGGGACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCACGGGGTAACACGGAGGCAGGAACTGTAGAAAGGGGGACTAG  650

seq1  GCAAGTAACTAGGGTAAGACTAAGGACAGGCTCAGTTAACACCTGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAACTAGGGTAAGACTAAGGACAGGCTCAGTTAACACCTGAAGAA  700

seq1  GAAACAAGAGCCTCCTGAGAGAAAGGCTCTCTCTGGCAGAGGCTGCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGAGCCTCCTGAGAGAAAGGCTCTCTCTGGCAGAGGCTGCAGCA  750

seq1  GATGCAAAGGAGAACCTTCTAGAACGGCATCAACCATAATGGACACCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGGAGAACCTTCTAGAACGGCATCAACCATAATGGACACCCAA  800

seq1  GAGGCCATGCAAGGCAACAAGAAGGCTGACAAATGAGGCTAGGGTCAGAG  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGGCCATGCAAGGCAACAAGAAAGCTGACAAATGAGGCTAGGGTCAGAG  850

seq1  TCTGGTGACTGAGACCATACTAAAGGACCTCCCCTTAAAACTGTGGCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGACTGAGACCATACTAAAGGACCTCCCCTTAAAACTGTGGCTCA  900

seq1  ACCAGTACTTTAAAAAAAGAATATGATAGCCGGGTGTGGTGGCGCACG-C  949
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  ACCAGTACTTT-AAAAAAGAATATGATAGCCGGGTGTGGTGGCGCACGCC  949

seq1  CTTTAGTCCCAGCACTCGGGAAGCAGAGGCAGGCGGATTTCTGAGTTCGA  999
      |||||||||||||||||||| ||||||| |||   |||||||||||||||
seq2  CTTTAGTCCCAGCACTCGGGGAGCAGAGTCAG--CGATTTCTGAGTTCGA  997

seq1  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGGGCTACACAGA  1049
      |  ||||||||||||| |||||||||||||||||||||||  ||||||||
seq2  G--CAGCCTGGTCTAC-AAGTGAGTTCCAGGACAGTCAGGCTTACACAGA  1044

seq1  GAAACACTGTCTCG------AAAAAC  1069
      ||||||||||||||      ||||||
seq2  GAAACACTGTCTCGTAAATCAAAAAC  1070