BAC Information

Click to search

BAC

Clone NameB6Ng01-254B12
Chromosome11 (Build37)
Map Location 118,756,357 - 118,897,082
singlet/doubletdoublet
Overlap geneD11Bwg0517e, Enpp7, Cbx2
Upstream geneSocs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneCbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254B12.bB6Ng01-254B12.g
ACCGA060653GA060654
length4881,151
definitionB6Ng01-254B12.b B6Ng01-254B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,896,595 - 118,897,082)(118,756,357 - 118,757,508)
sequence
cggctattgctaggcaactgcctgcttggagccggcgcagagcgcgctga
tgtgattagtgagctgggagccgccgaccctcagccccgcgctcccacca
ccagtccctacggcttcttggaccctagtgttctttcgggtagataccac
aaggttggatgaggggctgccgatggagaacatagcatggggtgatgatg
gtgggtgttctcagtcttctaggctgcagacttctcagcagagaggcggg
gtcctgaggctgcaaaggcgacccatactccggattcccaaagaggacct
taccagtactgaacctagttccacctccatattcctgggtagacgtcgct
cccttgcagaaaaagctgtaatccgtgcgaacacgcagagcccaagggga
gggaggggggaatacggaccatgtcacatcttttgcccttggccccacct
tcctcctccagctcagtgacctgcgcgggaggctgtgg
gctcccagaaaagagtgctgaggacagtcacccataaggaaggccctgtg
tgtccttcctgcagatgtcctacatggctactgctgtgcatacagccaca
agtcactgtagaagtccagacctccttcccgttgctattgtcacttactt
agcataacaagcagctcccatgatgctccgtgagaggtgtacaagccagc
ttgggcctcactctcctaccttccagccacaggacctatacaacccaatt
gtttccttcagaaaatgctgccaccaagatggtgacacaagagagtgtgt
tcgccacctgcttgctgctgaggtgtccctgctgaggagaaacaaggcca
gcccaaggcgtaacaggagcctgctggtacctcaagtttgtgctagcaat
gagtgagggctggctattgagcagatgagaggtatacgggtcttcagcag
actggagaaggctttcggtacctggccctgctcaggggtcagaaacaaga
gtcacaccccaaacccctctgcagtcccccatgttactgagtggcctcaa
agctcggcatcagcccatgaggagggatgagatgccccagcagtggtgtg
gagtagaaagactagaaggttctttgcacaggagaccccaggaaggccct
catttgtcacctaagtccccctacctggaatgtgtcccctggctccacct
ggtgcgcccactatcacaccaccctgctgagtgtcccacatgggctggaa
agaaaatcagcttcaccaagtggtcaacaggaaaccccaccaccaccgcc
acgaaactacagagtccccagtccaaaagtgaccagccactcagcctttc
aggggaataggcaaccttgactccatgacatggcacatgggtgaaagact
gtctgtaccttggcctcttctccatgtggcttggtcacataggtattgtg
tgtgatatatgagcatattataggaatatgcttaacacatataaatatcc
tggctcccgcactgactttcagcaagaggatcatggtgaatcttcatgca
gaagaagccaagccaaagggtcctgggttgcttctgttcttgccccggaa
ggctttgcaagagcactgctccagcacagctgcatagcaggcctgcctgg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_118896595_118897082
seq2: B6Ng01-254B12.b_51_538 (reverse)

seq1  CCACAGCCTCCCACGCAGGTCACTGAGCTGGAGGAGGAAGGTGGGGCCAA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCTCCCGCGCAGGTCACTGAGCTGGAGGAGGAAGGTGGGGCCAA  50

seq1  GGGCAAAAGATGTGACCTGGTCCGTATTCCCCCCTCCCTCCCCTTGGGCT  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGCAAAAGATGTGACATGGTCCGTATTCCCCCCTCCCTCCCCTTGGGCT  100

seq1  CTGCGTGTTCGCACGGATTACAGCTTTTTCTGCAAGGGAGCGACGTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGTTCGCACGGATTACAGCTTTTTCTGCAAGGGAGCGACGTCTAC  150

seq1  CCAGGAATATGGAGGTGGAACTAGGTTCAGTACTGGTAAGGTCCTCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATATGGAGGTGGAACTAGGTTCAGTACTGGTAAGGTCCTCTTTG  200

seq1  GGAATCCGGAGTATGGGTCGCCTTTGCAGCCTCAGGACCCCGCCTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCGGAGTATGGGTCGCCTTTGCAGCCTCAGGACCCCGCCTCTCTG  250

seq1  CTGAGAAGTCTGCAGCCTAGAAGACTGAGAACACCCACCATCATCACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGTCTGCAGCCTAGAAGACTGAGAACACCCACCATCATCACCCC  300

seq1  ATGCTATGTTCTCCATCGGCAGCCCCTCATCCAACCTTGTGGTATCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATGTTCTCCATCGGCAGCCCCTCATCCAACCTTGTGGTATCTACC  350

seq1  CGAAAGAACACTAGGGTCCAAGAAGCCGTAGGGACTGGTGGTGGGAGCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGAACACTAGGGTCCAAGAAGCCGTAGGGACTGGTGGTGGGAGCGC  400

seq1  GGGGCTGAGGGTCGGCGGCTCCCAGCTCACTAATCACATCAGCGCGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGAGGGTCGGCGGCTCCCAGCTCACTAATCACATCAGCGCGCTCT  450

seq1  GCGCCGGCTCCAAGCAGGCAGTTGCCTAGCAATAGCCG  488
      ||||||||||||||||||||||||||||||||||||||
seq2  GCGCCGGCTCCAAGCAGGCAGTTGCCTAGCAATAGCCG  488

seq1: chr11_118756357_118757508
seq2: B6Ng01-254B12.g_77_1227

seq1  GCTCCCAGAAAAGAGTGCTGAGGACAGTCACCCATAAGGAAGGCCCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGAAAAGAGTGCTGAGGACAGTCACCCATAAGGAAGGCCCTGTG  50

seq1  TGTCCTTCCTGCAGATGTCCTACATGGCTACTGCTGTGCATACAGCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCCTGCAGATGTCCTACATGGCTACTGCTGTGCATACAGCCACA  100

seq1  AGTCACTGTAGAAGTCCAGACCTCCTTCCCGTTGCTATTGTCACTTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGTAGAAGTCCAGACCTCCTTCCCGTTGCTATTGTCACTTACTT  150

seq1  AGCATAACAAGCAGCTCCCATGATGCTCCGTGAGAGGTGTACAAGCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACAAGCAGCTCCCATGATGCTCCGTGAGAGGTGTACAAGCCAGC  200

seq1  TTGGGCCTCACTCTCCTACCTTCCAGCCACAGGACCTATACAACCCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCTCACTCTCCTACCTTCCAGCCACAGGACCTATACAACCCAATT  250

seq1  GTTTCCTTCAGAAAATGCTGCCACCAAGATGGTGACACAAGAGAGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTCAGAAAATGCTGCCACCAAGATGGTGACACAAGAGAGTGTGT  300

seq1  TCGCCACCTGCTTGCTGCTGAGGTGTCCCTGCTGAGGAGAAACAAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCACCTGCTTGCTGCTGAGGTGTCCCTGCTGAGGAGAAACAAGGCCA  350

seq1  GCCCAAGGCGTAACAGGAGCCTGCTGGTACCTCAAGTTTGTGCTAGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGGCGTAACAGGAGCCTGCTGGTACCTCAAGTTTGTGCTAGCAAT  400

seq1  GAGTGAGGGCTGGCTATTGAGCAGATGAGAGGTATACGGGTCTTCAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGGCTGGCTATTGAGCAGATGAGAGGTATACGGGTCTTCAGCAG  450

seq1  ACTGGAGAAGGCTTTCGGTACCTGGCCCTGCTCAGGGGTCAGAAACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAAGGCTTTCGGTACCTGGCCCTGCTCAGGGGTCAGAAACAAGA  500

seq1  GTCACACCCCAAACCCCTCTGCAGTCCCCCATGTTACTGAGTGGCCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACCCCAAACCCCTCTGCAGTCCCCCATGTTACTGAGTGGCCTCAA  550

seq1  AGCTCGGCATCAGCCCATGAGGAGGGATGAGATGCCCCAGCAGTGGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGGCATCAGCCCATGAGGAGGGATGAGATGCCCCAGCAGTGGTGTG  600

seq1  GAGTAGAAAGACTAGAAGGTTCTTTGCACAGGAGACCCCAGGAAGGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAAAGACTAGAAGGTTCTTTGCACAGGAGACCCCAGGAAGGCCCT  650

seq1  CATTTGTCACCTAAGTCCCCCTACCTGGAATGTGTCCCCTGGCTCCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCACCTAAGTCCCCCTACCTGGAATGTGTCCCCTGGCTCCACCT  700

seq1  GGTGCGCCCACTATCACACCACCCTGCTGAGTGTCCCACATGGGCTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGCCCACTATCACACCACCCTGCTGAGTGTCCCACATGGGCTGGAA  750

seq1  AGAAAATCAGCTTCACCAAGTGGTCAACAGGAAACCCCACCACCACCGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCAGCTTCACCAAGTGGTCAACAGGAAACCCCACCACCACCGCC  800

seq1  ACGAAACTACAGAGTCCCCAGTCCAAAAGTGACCAGCCACTCAGCCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAACTACAGAGTCCCCAGTCCAAAAGTGACCAGCCACTCAGCCTTTC  850

seq1  AGGGGAATAGGCAACC-TGACTCCATGACATGGCACATGGGTG-AAGACT  898
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  AGGGGAATAGGCAACCTTGACTCCATGACATGGCACATGGGTGAAAGACT  900

seq1  GTCTGTACC-TGGCCTCTTCTCCATGTGGC-TGGTCACATAGGTATTGTG  946
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  GTCTGTACCTTGGCCTCTTCTCCATGTGGCTTGGTCACATAGGTATTGTG  950

seq1  TGTGATATATGAGCATA-TATAGGAATATGCTTACACA-ATATAAATATC  994
      ||||||||||||||||| |||||||||||||||| ||| |||||||||||
seq2  TGTGATATATGAGCATATTATAGGAATATGCTTA-ACACATATAAATATC  999

seq1  CTGGGCTCCCGCACTGAACTTCAGCAGAGAGGATCATGGTGAAATCTCAT  1044
      || ||||||||||||||  ||||||| ||||||||||||||||   ||||
seq2  CT-GGCTCCCGCACTGACTTTCAGCA-AGAGGATCATGGTGAATCTTCAT  1047

seq1  GCAGGAAGAAGCCAAGCCAAAGGGGTCCTGGTTGGCTTCCTGTTC-TGCC  1093
      ||| ||||||||||||||||| ||||||||| | |||| |||||| ||||
seq2  GCA-GAAGAAGCCAAGCCAAA-GGGTCCTGGGTTGCTT-CTGTTCTTGCC  1094

seq1  CCGGAAAGGCCTTGTCAAAGAGCACTGGCTCAGCACAGCTGCATAGCAGG  1143
      |||| ||||| |||   ||||||||||   ||||||||||||||||||||
seq2  CCGG-AAGGCTTTG--CAAGAGCACTGCTCCAGCACAGCTGCATAGCAGG  1141

seq1  CCTG-CTGGA  1152
      |||| |||||
seq2  CCTGCCTGGA  1151