BAC Information

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BAC

Clone NameB6Ng01-255H18
Chromosome11 (Build37)
Map Location 119,678,645 - 119,815,216
singlet/doubletdoublet
Overlap gene4932417H02Rik, Chmp6, Baiap2
Upstream geneD11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1
Downstream geneAatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255H18.bB6Ng01-255H18.g
ACCGA061680GA061681
length1,0871,090
definitionB6Ng01-255H18.b B6Ng01-255H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,678,645 - 119,679,739)(119,814,135 - 119,815,216)
sequence
gaattccctttttcctctcccaattaaatatagattgggatagatcacca
ctccctcctcctgcttacatgttaggaactaatgaagtgtcactgccaac
gaaccttgctatggtgcagaatcttggcatcaccacctccttctgtttgg
aaggacacgagataaaagtttgtcctgtgaggaaagggtgaggccaccaa
gcagatcctaacggggctatgacatcatttcctgaccaataccagagcag
cacagacagaccaggtccttgctgtggtcctcagaaaaacaggaccttct
ctatgtgtcagcaattcatgtgcaaactggtctggttctgggggacccat
ttactgcctgctgactgaaatgacatggggcagggatatgaatagtggat
ttgtcatcacagttgggtagataagtcacaaagattgtgtctcattaaat
gtgtgtttgtgggagaaactgataagctaggctgtgactaagaaaagacc
ttttactcgggaaccattgactagatcagatacctaggattggcaactta
ctgtaaaagccagaaaatactatttatcaagtttccagggcagttgagct
caggcagaagctgtggaaatcatgagggtgtaccacttggaaggttagga
agcctgtatctctggaggagcagagggcaggctcccctctcagtgggagg
ggcagagcttgccaagggccagggatggggccatcactctccaaagcact
cgttataatcagccagacccatggtctgatttccacctgcctaaggacat
tgcctcgcttctttcaaagaaggccttgtgtttgctcattagggctgcta
accacattgtgtggacaaccctccatcttcactgtgccaaatgctcagag
caactgtagctcacagtgtctccgcagagcacagtgccctccccacccta
ccccatccccaccagagcctcttcccacagcacagccagcctcccatctc
agagtgattcacctatcccagaccttgggtttctcctgtctaagcccggt
atctcagccagcaaaaaataattaatatttttttaaa
gaattcttttacttatccacctgctcattcagtacttattaaagatacct
tccacatgccactaaggggtgcctgcaaactcacaggagactattctatg
gaacacgtcccaaaaggactggggctttgggaaactcaccgagagatcag
cagagctcaagccaagtttaatgtggcatttctgccaggaggtcacaagc
agggtgtcctgcagctcacccctgccctcttttaaagacaagacctcact
atttagccctagctggcctggaactttctatacagaccaggttgtcctgg
aactcacagagttccacctgcttctgcctcttgagtgctagattaaaggt
gtgtccctctaccctgagctcaggcccaattctgtggcttcacccctgca
gccaggactcactagagaagcaaagcaggcatcagctttgcagcccaagc
agtacctaggtaagagggagccccacagcatcgtgtagctccagtgcagg
ctgctttgcaggatatccagcaagacttgcctaggatgtcatgtacgaag
ggaaaaagatcaattccaggtattatgtgagcatagaagcctgcctgaag
gaggtggagcctgagctgtgccttgcttggttagagtcaaaaaggtagga
atgtgtgtgcattcttttagataaaaagaggcatgggtttctggaaggaa
atgggctttggggtaaaaagggaagagtgaaggcgacaggggtctcggac
acagagccagggtagcctcggcaaccaccctccatgcctcatttctgcag
tgtgcccctgcccaaggctgtggccaacccctctctgttctgggcagaag
agaaagaaacagactgagtgagaatactcctggcacataggccttagccc
agggctccttagcagcccgtggaaaggctctgaagcatgtgcagcatcag
aaaaccttatgtcttctcttgtgaagcaggaagagaaacaggactgtttc
cagaaacagagccctagactcctagcttctgaggggaggtgtagttccta
ccagaccccacaggccagcttcagtccacttaggatgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_119678645_119679739
seq2: B6Ng01-255H18.b_48_1134

seq1  GAATTCCCTTTTTCCTCTCCCAATTAAATATAGATTGGGATAGATCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTTTCCTCTCCCAATTAAATATAGATTGGGATAGATCACCA  50

seq1  CTCCCTCCTCCTGCTTACATGTTAGGAACTAATGAAGTGTCACTGCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCTCCTGCTTACATGTTAGGAACTAATGAAGTGTCACTGCCAAC  100

seq1  GAACCTTGCTATGGTGCAGAATCTTGGCATCACCACCTCCTTCTGTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTGCTATGGTGCAGAATCTTGGCATCACCACCTCCTTCTGTTTGG  150

seq1  AAGGACACGAGATAAAAGTTTGTCCTGTGAGGAAAGGGTGAGGCCACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACACGAGATAAAAGTTTGTCCTGTGAGGAAAGGGTGAGGCCACCAA  200

seq1  GCAGATCCTAACGGGGCTATGACATCATTTCCTGACCAATACCAGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCTAACGGGGCTATGACATCATTTCCTGACCAATACCAGAGCAG  250

seq1  CACAGACAGACCAGGTCCTTGCTGTGGTCCTCAGAAAAACAGGACCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAGACCAGGTCCTTGCTGTGGTCCTCAGAAAAACAGGACCTTCT  300

seq1  CTATGTGTCAGCAATTCATGTGCAAACTGGTCTGGTTCTGGGGGACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTCAGCAATTCATGTGCAAACTGGTCTGGTTCTGGGGGACCCAT  350

seq1  TTACTGCCTGCTGACTGAAATGACATGGGGCAGGGATATGAATAGTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCCTGCTGACTGAAATGACATGGGGCAGGGATATGAATAGTGGAT  400

seq1  TTGTCATCACAGTTGGGTAGATAAGTCACAAAGATTGTGTCTCATTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCACAGTTGGGTAGATAAGTCACAAAGATTGTGTCTCATTAAAT  450

seq1  GTGTGTTTGTGGGAGAAACTGATAAGCTAGGCTGTGACTAAGAAAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGTGGGAGAAACTGATAAGCTAGGCTGTGACTAAGAAAAGACC  500

seq1  TTTTACTCGGGAACCATTGACTAGATCAGATACCTAGGATTGGCAACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCGGGAACCATTGACTAGATCAGATACCTAGGATTGGCAACTTA  550

seq1  CTGTAAAAGCCAGAAAATACTATTTATCAAGTTTCCAGGGCAGTTGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAGCCAGAAAATACTATTTATCAAGTTTCCAGGGCAGTTGAGCT  600

seq1  CAGGCAGAAGCTGTGGAAATCATGAGGGTGTACCACTTGGAAGGTTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGAAGCTGTGGAAATCATGAGGGTGTACCACTTGGAAGGTTAGGA  650

seq1  AGCCTGTATCTCTGGAGGAGCAGAGGGCAGGCTCCCCTCTCAGTGGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTATCTCTGGAGGAGCAGAGGGCAGGCTCCCCTCTCAGTGGGAGG  700

seq1  GGCAGAGCTTGCCAAGGGCCAGGGATGGGGCCATCACTCTCCAAAGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTTGCCAAGGGCCAGGGATGGGGCCATCACTCTCCAAAGCACT  750

seq1  CGTTATAATCAGCCAGACCCATGGTCTGATTTCCACCTGCCTAAGGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATAATCAGCCAGACCCATGGTCTGATTTCCACCTGCCTAAGGACAT  800

seq1  TGCCTCGCTTCTTTCAAAGAAGGCCTTGTGTTTGCTCATTAGGGCTGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCGCTTCTTTCAAAGAAGGCCTTGTGTTTGCTCATTAGGGCTGCTA  850

seq1  ACCACATTGTGTGGACAACCCTCCATCTTCACTGTGCCAAATGCTCAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTGTGTGGACAACCCTCCATCTTCACTGTGCCAAATGCTCAGAG  900

seq1  CAACTGTAGCTCAACAGTGTCTCCGCAGAGCACAGTGCCCTCCCCACCCT  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAGCTC-ACAGTGTCTCCGCAGAGCACAGTGCCCTCCCCACCCT  949

seq1  ACCCCATCCCCCACCAGAGCCTC-TCCCACAGCACAGCCAGCCTCCCAAT  999
      ||||||| ||||||||||||||| ||||||||||||||||||||||| ||
seq2  ACCCCAT-CCCCACCAGAGCCTCTTCCCACAGCACAGCCAGCCTCCC-AT  997

seq1  CTCAGGAGGTGATTCACCTATCCCAGACCTTGGGTTTCTCCCTGTCTAAA  1049
      |||||   ||||||||||||||||||||||||||||||| ||||||||| 
seq2  CTCAG--AGTGATTCACCTATCCCAGACCTTGGGTTTCT-CCTGTCTAA-  1043

seq1  GCCCCGGTAATCTCAGCCAGCAAAAAATAAATAATATTTTTTTAAA  1095
        |||||| ||||||||||||||||||||| |||||||||||||||
seq2  -GCCCGGT-ATCTCAGCCAGCAAAAAATAATTAATATTTTTTTAAA  1087

seq1: chr11_119814135_119815216
seq2: B6Ng01-255H18.g_68_1157 (reverse)

seq1  CTACATCCCTAGTGGACTGAAGCTGGCCTGT-GGGTCTGGTAGGACCTAC  49
      ||||||||  ||||||||||||||||||||| ||||||||||||| ||||
seq2  CTACATCCTAAGTGGACTGAAGCTGGCCTGTGGGGTCTGGTAGGAACTAC  50

seq1  CACT-CCCTCAGAAGCTAGGAGTCTAGTGCTCTG-TTCTGG-AACAGTCC  96
        || |||||||||||||||||||||| |||||| |||||| ||||||||
seq2  ACCTCCCCTCAGAAGCTAGGAGTCTAGGGCTCTGTTTCTGGAAACAGTCC  100

seq1  TGTTTCTCTTCCTGCTTCAC-AGAG-AGACAT-AGGTTTTCTGATGCTGC  143
      |||||||||||||||||||| |||| |||||| |||||||||||||||||
seq2  TGTTTCTCTTCCTGCTTCACAAGAGAAGACATAAGGTTTTCTGATGCTGC  150

seq1  ACATGCTTCAGAGCC-TTCCACGGGCTGCTAAGGAGCCCTGGGCTAAGGC  192
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACATGCTTCAGAGCCTTTCCACGGGCTGCTAAGGAGCCCTGGGCTAAGGC  200

seq1  CTATGTGCCAGGAGTATTCTCACTCAGTCTGTTTCTTTCTCTTCTGCCCA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGCCAGGAGTATTCTCACTCAGTCTGTTTCTTTCTCTTCTGCCCA  250

seq1  GAACAGAGAGGGGTTGGCCACAGCCTTGGGCAGGGGCACACTGCAGAAAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGAGGGGTTGGCCACAGCCTTGGGCAGGGGCACACTGCAGAAAT  300

seq1  GAGGCATGGAGGGTGGTTGCCGAGGCTACCCTGGCTCTGTGTCCGAGACC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATGGAGGGTGGTTGCCGAGGCTACCCTGGCTCTGTGTCCGAGACC  350

seq1  CCTGTCGCCTTCACTCTTCCCTTTTTACCCCAAAGCCCATTTCCTTCCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCGCCTTCACTCTTCCCTTTTTACCCCAAAGCCCATTTCCTTCCAG  400

seq1  AAACCCATGCCTCTTTTTATCTAAAAGAATGCACACACATTCCTACCTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATGCCTCTTTTTATCTAAAAGAATGCACACACATTCCTACCTTT  450

seq1  TTGACTCTAACCAAGCAAGGCACAGCTCAGGCTCCACCTCCTTCAGGCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTAACCAAGCAAGGCACAGCTCAGGCTCCACCTCCTTCAGGCAG  500

seq1  GCTTCTATGCTCACATAATACCTGGAATTGATCTTTTTCCCTTCGTACAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATGCTCACATAATACCTGGAATTGATCTTTTTCCCTTCGTACAT  550

seq1  GACATCCTAGGCAAGTCTTGCTGGATATCCTGCAAAGCAGCCTGCACTGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCTAGGCAAGTCTTGCTGGATATCCTGCAAAGCAGCCTGCACTGG  600

seq1  AGCTACACGATGCTGTGGGGCTCCCTCTTACCTAGGTACTGCTTGGGCTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACACGATGCTGTGGGGCTCCCTCTTACCTAGGTACTGCTTGGGCTG  650

seq1  CAAAGCTGATGCCTGCTTTGCTTCTCTAGTGAGTCCTGGCTGCAGGGGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGATGCCTGCTTTGCTTCTCTAGTGAGTCCTGGCTGCAGGGGTG  700

seq1  AAGCCACAGAATTGGGCCTGAGCTCAGGGTAGAGGGACACACCTTTAATC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGAATTGGGCCTGAGCTCAGGGTAGAGGGACACACCTTTAATC  750

seq1  TAGCACTCAAGAGGCAGAAGCAGGTGGAACTCTGTGAGTTCCAGGACAAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTCAAGAGGCAGAAGCAGGTGGAACTCTGTGAGTTCCAGGACAAC  800

seq1  CTGGTCTGTATAGAAAGTTCCAGGCCAGCTAGGGCTAAATAGTGAGGTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGTATAGAAAGTTCCAGGCCAGCTAGGGCTAAATAGTGAGGTCT  850

seq1  TGTCTTTAAAAGAGGGCAGGGGTGAGCTGCAGGACACCCTGCTTGTGACC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTAAAAGAGGGCAGGGGTGAGCTGCAGGACACCCTGCTTGTGACC  900

seq1  TCCTGGCAGAAATGCCACATTAAACTTGGCTTGAGCTCTGCTGATCTCTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAGAAATGCCACATTAAACTTGGCTTGAGCTCTGCTGATCTCTC  950

seq1  GGTGAGTTTCCCAAAGCCCCAGTCCTTTTGGGACGTGTTCCATAGAATAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTTCCCAAAGCCCCAGTCCTTTTGGGACGTGTTCCATAGAATAG  1000

seq1  TCTCCTGTGAGTTTGCAGGCACCCCTTAGTGGCATGTGGAAGGTATCTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGAGTTTGCAGGCACCCCTTAGTGGCATGTGGAAGGTATCTTT  1050

seq1  AATAAGTACTGAATGAGCAGGTGGATAAGTAAAAGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTACTGAATGAGCAGGTGGATAAGTAAAAGAATTC  1090