BAC Information

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BAC

Clone NameB6Ng01-257H01
Chromosome11 (Build37)
Map Location 116,539,413 - 116,702,437
singlet/doubletdoublet
Overlap geneSt6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6
Upstream geneGrb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik
Downstream gene1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257H01.bB6Ng01-257H01.g
ACCGA063139GA063140
length5901,142
definitionB6Ng01-257H01.b B6Ng01-257H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,539,413 - 116,540,008)(116,701,306 - 116,702,437)
sequence
cttctgcttgcctcacctgcgttctgaccctaggcgtgcttttgaaaacg
cactcagcctccctctaaccccttgcatgtcactaggcagagcctaccag
gaaccttttaccagtttcattttttttttttttttttttttttttttttg
atgtggaaggcaaaacctgctgtcccgtgccagctctaggatatccccag
tcagttttgagagtttgctttcataaaagtagtttggccacttgcccctt
aaataccacaaaggagggaagcaggacaggagggcaggggaagctgaggc
taggctgacccagaacccaccctcctggctaacgggctcgtcccacttct
gggccacccacctggtcacaggtgtgcaagggtgtcagcagcatgagcgc
tcccgtgctaggcatatacatgtctccaaatcgtgtgttaatcagcttgg
atttcagaaacctggaagggcatcagaaacgttaaaaccaagaaggggct
agcaagcagacagagttcagttaagtacagccctggtactctctgagccc
tccagataatttcttgtgtgtgggaggggtgttatttgtt
gaattcaaacccctggagatattacagaaaccaggagaaactgtctttgt
accaggtatagatgagctagaagaaactatacctgttcgtcccagctccg
actggtccggacttgtcctgtattgccattttggagtagaatcatagaat
gagacagaagggccctttttatctgttgggtgtgtgcactccctcctgtg
gcgacagagttagggactcaagtccaaagggagagagagcacctccatgt
cccacatgcctgtgtccagtagtaggccaggttctgcctgctttccctgg
ctttttgctggagtgagtgcagaactggatagatgcagtttcagcagtga
gagtttcaaggctaggggtcctcctagaacctttgcttttgcagtgttgg
tcacagctggcttcccaggaggcagacagtctgtgtcaccattgctcgct
cggctctgccttccagggcccattcccagtggagagagagcacaggccgg
cctgtgctgagttggcccccagggtgtctgcatctgcagggctgatcgtc
actgaattcttcatttgttggatttcagggggctggtggcatgttgtcct
caaccttgacaccaccattgccatcacccagaactttgccagcagcacca
acttccctgttgtgtggcacaagacggtaagagggagaccaaagttatca
aggaagtggtataggtgagaaaccgtttattccctctgctttgttccagc
tttttccccaaagaggaaaagggaagcggtccctgctgccatgtttgtgt
gtggggacagccgggcctttaccgacctgtgggtagaaagggcccaggtc
agagctagtcggcaggggggtctgctagcctccaggtggcatcgtgcttg
ggtacgttgcggctggcttctgcatgtgtggcccaacatcacagtcaaga
catggtcacgattggggactggtttcttatttttgtttcgtgctggtttc
ctccttttttctaatcctttttatccttatcgttggttgtattttttaca
taaaagctaggcactagccaactatcaaccacaacaaaagcctttgttga
ggttttttatttcccttgggagccattcatcttttgaactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116539413_116540008
seq2: B6Ng01-257H01.b_42_637

seq1  GAATTCCTTCTGCTTGCCTCACCTGCGTTCTGACCCTAGGCGTGCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGCTTGCCTCACCTGCGTTCTGACCCTAGGCGTGCTTTTG  50

seq1  AAAACGCACTCAGCCTCCCTCTAACCCCTTGCATGTCACTAGGCAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGCACTCAGCCTCCCTCTAACCCCTTGCATGTCACTAGGCAGAGCC  100

seq1  TACCAGGAACCTTTTACCAGTTTCATTTTTTTTTTTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGAACCTTTTACCAGTTTCATTTTTTTTTTTTTTTTTTTTTTTTT  150

seq1  TTTTTGATGTGGAAGGCAGAACCTGCTGTCCCGTGCCAGCTCTAGGATAT  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTTGATGTGGAAGGCAAAACCTGCTGTCCCGTGCCAGCTCTAGGATAT  200

seq1  CCCCAGTCAGTTTTGAGAGTTTGCTTTCATAAGAGTAGTTTGGCCACTTG  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCCCAGTCAGTTTTGAGAGTTTGCTTTCATAAAAGTAGTTTGGCCACTTG  250

seq1  CCCCTTAAATACCACAAAGGAGGGAAGCAGGACAGGAGGGCAGGGGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTAAATACCACAAAGGAGGGAAGCAGGACAGGAGGGCAGGGGAAGC  300

seq1  TGAGGCTAGGCTGACCCAGAACCCACCCTCCTGGCTAACGGGCTCGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTAGGCTGACCCAGAACCCACCCTCCTGGCTAACGGGCTCGTCCC  350

seq1  ACTTCTGGGCCACCCACCTGGTCACAGGTGTGCAAGGCTGTCAGCAGCAT  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTTCTGGGCCACCCACCTGGTCACAGGTGTGCAAGGGTGTCAGCAGCAT  400

seq1  GAGCGCTCCCGTGCTAGGCATATACATGTCTCCAAATCGTGTGTTAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCTCCCGTGCTAGGCATATACATGTCTCCAAATCGTGTGTTAATCA  450

seq1  GCTTGGATTTCAGAAACCTGGAAGGGCATCAGAAACGTTAAAACCAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGATTTCAGAAACCTGGAAGGGCATCAGAAACGTTAAAACCAAGAA  500

seq1  GGGGCTAGCAAGCAGACAGAGTTCAGTTAAGTACAGCCCTGGTACTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAGCAAGCAGACAGAGTTCAGTTAAGTACAGCCCTGGTACTCTCT  550

seq1  GAGCCCTCCAGATAATTTCTTGTGTGTGGGAGGGGTGTTATTTGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTCCAGATAATTTCTTGTGTGTGGGAGGGGTGTTATTTGTT  596

seq1: chr11_116701306_116702437
seq2: B6Ng01-257H01.g_68_1209 (reverse)

seq1  TAAGTTCAA---ATGAATGCTTCC--AGGGAAAATAAAAACCTCAACAAA  45
      |||||||||   |||||||  |||  |||||||  |||||||||||||||
seq2  TAAGTTCAAAAGATGAATGGCTCCCAAGGGAAATAAAAAACCTCAACAAA  50

seq1  GGCTTTTGTTGTTGTTGTTGTTTTGGCTAGTG-CTAGCTTTTATGTTTAA  94
      |||||||||||| |||| |   |||||||||| |||||||||||| | ||
seq2  GGCTTTTGTTGTGGTTGAT-AGTTGGCTAGTGCCTAGCTTTTATG-TAAA  98

seq1  AAATAACAAACAAACGAATAAGAATAAAAAGAATAAGAAAAAA-GAAGAA  143
      |||||   ||| |||| ||||| |||||||| || |||||||| || |||
seq2  AAATA--CAACCAACG-ATAAGGATAAAAAGGATTAGAAAAAAGGAGGAA  145

seq1  AACAGCACGAAAACAAAATAAGAAACAA--TCCCAATCGTGACCATGTCT  191
      | ||||||||||  |||||||||||| |   |||||||||||||||||||
seq2  ACCAGCACGAAACAAAAATAAGAAACCAGTCCCCAATCGTGACCATGTCT  195

seq1  TGACTGTGATGTT-GGCCACACATGCAG-AGCCAGCCGC-ACGTACCCAA  238
      ||||||||||||| |||||||||||||| |||||||||| ||||||||||
seq2  TGACTGTGATGTTGGGCCACACATGCAGAAGCCAGCCGCAACGTACCCAA  245

seq1  GCACGATGCCACCTGGAGGCTAGCAGA-CCCCCTGCCGACTAGCTCTGAC  287
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCACGATGCCACCTGGAGGCTAGCAGACCCCCCTGCCGACTAGCTCTGAC  295

seq1  CTGGGCCCTTTCTACCCACAGGTCGGT-AAGGCCCGGCTGTCCCCACACA  336
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGGGCCCTTTCTACCCACAGGTCGGTAAAGGCCCGGCTGTCCCCACACA  345

seq1  C-AACATGGCAGCAGGGACCGCTTCCCTTTTCCTCTTTGGGGAAAAAGCT  385
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGGCAGCAGGGACCGCTTCCCTTTTCCTCTTTGGGGAAAAAGCT  395

seq1  GGAACAAAGCAGAGGGAATAAACGGTTTCTCACCTATACCACTTCCTTGA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAGCAGAGGGAATAAACGGTTTCTCACCTATACCACTTCCTTGA  445

seq1  TAACTTTGGTCTCCCTCTTACCGTCTTGTGCCACACAACAGGGAAGTTGG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGGTCTCCCTCTTACCGTCTTGTGCCACACAACAGGGAAGTTGG  495

seq1  TGCTGCTGGCAAAGTTCTGGGTGATGGCAATGGTGGTGTCAAGGTTGAGG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGGCAAAGTTCTGGGTGATGGCAATGGTGGTGTCAAGGTTGAGG  545

seq1  ACAACATGCCACCAGCCCCCTGAAATCCAACAAATGAAGAATTCAGTGAC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATGCCACCAGCCCCCTGAAATCCAACAAATGAAGAATTCAGTGAC  595

seq1  GATCAGCCCTGCAGATGCAGACACCCTGGGGGCCAACTCAGCACAGGCCG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCCCTGCAGATGCAGACACCCTGGGGGCCAACTCAGCACAGGCCG  645

seq1  GCCTGTGCTCTCTCTCCACTGGGAATGGGCCCTGGAAGGCAGAGCCGAGC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCTCTCTCTCCACTGGGAATGGGCCCTGGAAGGCAGAGCCGAGC  695

seq1  GAGCAATGGTGACACAGACTGTCTGCCTCCTGGGAAGCCAGCTGTGACCA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGGTGACACAGACTGTCTGCCTCCTGGGAAGCCAGCTGTGACCA  745

seq1  ACACTGCAAAAGCAAAGGTTCTAGGAGGACCCCTAGCCTTGAAACTCTCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAAAAGCAAAGGTTCTAGGAGGACCCCTAGCCTTGAAACTCTCA  795

seq1  CTGCTGAAACTGCATCTATCCAGTTCTGCACTCACTCCAGCAAAAAGCCA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAAACTGCATCTATCCAGTTCTGCACTCACTCCAGCAAAAAGCCA  845

seq1  GGGAAAGCAGGCAGAACCTGGCCTACTACTGGACACAGGCATGTGGGACA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGCAGGCAGAACCTGGCCTACTACTGGACACAGGCATGTGGGACA  895

seq1  TGGAGGTGCTCTCTCTCCCTTTGGACTTGAGTCCCTAACTCTGTCGCCAC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGCTCTCTCTCCCTTTGGACTTGAGTCCCTAACTCTGTCGCCAC  945

seq1  AGGAGGGAGTGCACACACCCAACAGATAAAAAGGGCCCTTCTGTCTCATT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGTGCACACACCCAACAGATAAAAAGGGCCCTTCTGTCTCATT  995

seq1  CTATGATTCTACTCCAAAATGGCAATACAGGACAAGTCCGGACCAGTCGG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATTCTACTCCAAAATGGCAATACAGGACAAGTCCGGACCAGTCGG  1045

seq1  AGCTGGGACGAACAGGTATAGTTTCTTCTAGCTCATCTATACCTGGTACA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGACGAACAGGTATAGTTTCTTCTAGCTCATCTATACCTGGTACA  1095

seq1  AAGACAGTTTCTCCTGGTTTCTGTAATATCTCCAGGGGTTTGAATTC  1132
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTTTCTCCTGGTTTCTGTAATATCTCCAGGGGTTTGAATTC  1142