BAC Information

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BAC

Clone NameB6Ng01-258B22
Chromosome11 (Build37)
Map Location 39,662,738 - 39,813,357
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258B22.bB6Ng01-258B22.g
ACCGA063641GA063642
length1,1391,155
definitionB6Ng01-258B22.b B6Ng01-258B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,812,207 - 39,813,357)(39,662,738 - 39,663,897)
sequence
gaattcatctcagctagattgtctgttcatgataattctgtttgaaatct
gtatttttttttaaatagaaagtcttttgaaaggcatggctgctaaccta
tcaagagcacacagacgcactgtgcctttaagcagggctgattaaaggac
caaattcaaggcttttagtgtattgtatacactaaggacagaggccactc
acttaatcatgtacttgaggcaggaagcaaagtcaccacaaaagatctca
gagggaggctgactgacattgtgtatttgctcattgattttcccttcaga
agaaatggaataaacgtaagaaactttcactaacaggataatggaatgaa
cagaattttgtggatataaacctttccaaatacggacttttctgtagaat
attaatcatagctatcaagaataaatctcatagagtacaatattcacttg
aaggtgttctaaggacatagaggcataaacacatattataatcttccatg
ttacatacattttatatgcatgttcattcataggcgtaatctgaaacttc
attctgaaggcatcttttaagattctgataaagcattcaagaatatcaag
catgcagattatatttctaaagtatttttaaaaagaagaaagccacttta
gaagggacttattcaaccgcatcctgctttttccaataataattgatgcc
tttgctacccaagtaccatggaaatggaccagttcctcctactgcaccct
attttttccctgtggaaatttgtaagagagagtttattcctgccagaata
tttttaaaaatattcaaagcagtgaatctacggtatccagccttctctcc
aagtattgattattgagagagagggttaaatcaactttttttggaaaaca
gaaattttaccagtccatttttatgctttccaaagggcagatgctgtttt
cagggccagtgaacattctgcagtgtgtgtctgtaaattctgggtctgct
gatttagtatcgtcctctcagcatctcagtgagtatggagcccctgggag
ctgtctcacctgaaagtgtaataaacagatgcatgcacacacagttactg
agtaggtacttattacttagtatgcatgtcattctagta

gaattccataattgataaaagtaatctatattggcagaaagtagctcaat
ggctgtctggacgaaggatggacatgaaatttactataaagggaaagaat
attttatggtaatggaaatactttatatctttattttcatatcattgagt
gtgtatgcatttattgaagttgatacttcaaagtggattcatcttatcac
atttaaattattccataataattccaatagatctatacataaggaataag
tacatgcatagccaagaataaggtacacatgatggttcttcttttacctc
cattgcaggcaacgtctatttcttgatattatgcaggtggactgaatttg
ctttttatcttacatgaagtttatacatcttgcttattaggaaatgagta
cagaaaaactcatgtgagaccatatatgaatatgtttcagacttaggtaa
ttttgaaagatgaaatttaaccttagcagcaatctagcatttctttagaa
acatgtttagtgtcctgtttctttcccccttgtagttactacactttatt
ctttaaatattctggcaattgtcagcctccttacatgtctattttcatta
tttgtaagaattgctttgttctttcccaaggctctacttcatcttcctca
ttggagttcagtgacttctcaggagcctgggtgagcctgggtgaacctgg
gggagcctgggggagcctgggtgaacctgggtgagcctggatgaggagtt
ggtttaaaagcattcatgagtcgctttctgtcacgtattctccaagtctc
ataacagcattttataaagtcctttatgaccttgccaaaacttgcttact
tctcacctagcaaacctctgatcttttcactgttttgtttcctgtgcctt
caagcatcagtctacttctgcctcctcctgtacttgaaattcttgcattt
gatacttcagctgtgtttgattcctttcaaaggccagagtatgaactaca
catctcttgctacacatcgtggaaacactgctaattgctgtctgctacac
ttttctttctatagaacctttcatttctgtgttttcgttctctgcctgat
tctaatggagcatcaagaaatccaccactgacattcgagaaggtccattc
tgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39812207_39813357
seq2: B6Ng01-258B22.b_45_1183 (reverse)

seq1  TACTAGAATGACATTTGCATTACTAAGTAATAAGTACTTACTCCAAGT-A  49
      |||||||||||||  |||| ||||||||||||||||| |||||  ||| |
seq2  TACTAGAATGACA--TGCA-TACTAAGTAATAAGTACCTACTC--AGTAA  45

seq1  CTGTGTGTGCATGGCCATCTGGTTTAATAACACTTTCAGGGTTGAGACAG  99
      |||||||||||||  ||||||  || || |||||||||||  ||||||||
seq2  CTGTGTGTGCATG--CATCTG--TTTATTACACTTTCAGG--TGAGACAG  89

seq1  CTCCCAGGGGCTCCATAACTCACTGAGATTGCTGAGAGGACGATACTAAA  149
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  CTCCCAGGGGCTCCAT-ACTCACTGAGA-TGCTGAGAGGACGATACTAAA  137

seq1  TCAGCAGACCCAGAATTTACAGACACACAACTGCAGAATGTTCACTGGCC  199
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAGCAGACCCAGAATTTACAGACACAC-ACTGCAGAATGTTCACTGGCC  186

seq1  CTGAAAACAGCATCTGCCCTTTGGAAAGCATAAAAATGGACTGGTAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACAGCATCTGCCCTTTGGAAAGCATAAAAATGGACTGGTAAAAT  236

seq1  TTCTGTTTTCC-AAAAAAGTTGATTTAACCCTCTCTCTCAATAATCAATA  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTCCAAAAAAAGTTGATTTAACCCTCTCTCTCAATAATCAATA  286

seq1  CTTGGAGAGAAGGCTGGATACCGTAGATTCACTGCTTTGAATATTTTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAGAAGGCTGGATACCGTAGATTCACTGCTTTGAATATTTTTAA  336

seq1  AAATATTCTGGCAGGAATAAACTCTCTCTTACAAATTTCCACAGGGAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTGGCAGGAATAAACTCTCTCTTACAAATTTCCACAGGGAAAA  386

seq1  AATAGGGTGCAGTAGGAGGAACTGGTCCATTTCCATGGTACTTGGGTAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGTGCAGTAGGAGGAACTGGTCCATTTCCATGGTACTTGGGTAGC  436

seq1  AAAGGCATCAATTATTATTGGAAAAAGCAGGATGCGGTTGAATAAGTCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATCAATTATTATTGGAAAAAGCAGGATGCGGTTGAATAAGTCCC  486

seq1  TTCTAAAGTGGCTTTCTTCTTTTTAAAAATACTTTAGAAATATAATCTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGTGGCTTTCTTCTTTTTAAAAATACTTTAGAAATATAATCTGC  536

seq1  ATGCTTGATATTCTTGAATGCTTTATCAGAATCTTAAAAGATGCCTTCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGATATTCTTGAATGCTTTATCAGAATCTTAAAAGATGCCTTCAG  586

seq1  AATGAAGTTTCAGATTACGCCTATGAATGAACATGCATATAAAATGTATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTTTCAGATTACGCCTATGAATGAACATGCATATAAAATGTATG  636

seq1  TAACATGGAAGATTATAATATGTGTTTATGCCTCTATGTCCTTAGAACAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGAAGATTATAATATGTGTTTATGCCTCTATGTCCTTAGAACAC  686

seq1  CTTCAAGTGAATATTGTACTCTATGAGATTTATTCTTGATAGCTATGATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTGAATATTGTACTCTATGAGATTTATTCTTGATAGCTATGATT  736

seq1  AATATTCTACAGAAAAGTCCGTATTTGGAAAGGTTTATATCCACAAAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTACAGAAAAGTCCGTATTTGGAAAGGTTTATATCCACAAAATT  786

seq1  CTGTTCATTCCATTATCCTGTTAGTGAAAGTTTCTTACGTTTATTCCATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATTCCATTATCCTGTTAGTGAAAGTTTCTTACGTTTATTCCATT  836

seq1  TCTTCTGAAGGGAAAATCAATGAGCAAATACACAATGTCAGTCAGCCTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAAGGGAAAATCAATGAGCAAATACACAATGTCAGTCAGCCTCC  886

seq1  CTCTGAGATCTTTTGTGGTGACTTTGCTTCCTGCCTCAAGTACATGATTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGATCTTTTGTGGTGACTTTGCTTCCTGCCTCAAGTACATGATTA  936

seq1  AGTGAGTGGCCTCTGTCCTTAGTGTATACAATACACTAAAAGCCTTGAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGGCCTCTGTCCTTAGTGTATACAATACACTAAAAGCCTTGAAT  986

seq1  TTGGTCCTTTAATCAGCCCTGCTTAAAGGCACAGTGCGTCTGTGTGCTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTTTAATCAGCCCTGCTTAAAGGCACAGTGCGTCTGTGTGCTCT  1036

seq1  TGATAGGTTAGCAGCCATGCCTTTCAAAAGACTTTCTATTTAAAAAAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGTTAGCAGCCATGCCTTTCAAAAGACTTTCTATTTAAAAAAAAA  1086

seq1  TACAGATTTCAAACAGAATTATCATGAACAGACAATCTAGCTGAGATGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATTTCAAACAGAATTATCATGAACAGACAATCTAGCTGAGATGAA  1136

seq1  TTC  1151
      |||
seq2  TTC  1139


seq1: chr11_39662738_39663897
seq2: B6Ng01-258B22.g_65_1219

seq1  GAATTCCATAATTGATAAAAGTAATCTATATTGGCAGAAAGTAGCTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATTGATAAAAGTAATCTATATTGGCAGAAAGTAGCTCAAT  50

seq1  GGCTGTCTGGACGAAGGATGGACATGAAATTTACTATAAAGGGAAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTGGACGAAGGATGGACATGAAATTTACTATAAAGGGAAAGAAT  100

seq1  ATTTTATGGTAATGGAAATACTTTATATCTTTATTTTCATATCATTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGTAATGGAAATACTTTATATCTTTATTTTCATATCATTGAGT  150

seq1  GTGTATGCATTTATTGAAGTTGATACTTCAAAGTGGATTCATCTTATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCATTTATTGAAGTTGATACTTCAAAGTGGATTCATCTTATCAC  200

seq1  ATTTAAATTATTCCATAATAATTCCAATAGATCTATACATAAGGAATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTATTCCATAATAATTCCAATAGATCTATACATAAGGAATAAG  250

seq1  TACATGCATAGCCAAGAATAAGGTACACATGATGGTTCTTCTTTTACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCATAGCCAAGAATAAGGTACACATGATGGTTCTTCTTTTACCTC  300

seq1  CATTGCAGGCAACGTCTATTTCTTGATATTATGCAGGTGGACTGAATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGGCAACGTCTATTTCTTGATATTATGCAGGTGGACTGAATTTG  350

seq1  CTTTTTATCTTACATGAAGTTTATACATCTTGCTTATTAGGAAATGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATCTTACATGAAGTTTATACATCTTGCTTATTAGGAAATGAGTA  400

seq1  CAGAAAAACTCATGTGAGACCATATATGAATATGTTTCAGACTTAGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAACTCATGTGAGACCATATATGAATATGTTTCAGACTTAGGTAA  450

seq1  TTTTGAAAGATGAAATTTAACCTTAGCAGCAATCTAGCATTTCTTTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGATGAAATTTAACCTTAGCAGCAATCTAGCATTTCTTTAGAA  500

seq1  ACATGTTTAGTGTCCTGTTTCTTTCCCCCTTGTAGTTACTACACTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTAGTGTCCTGTTTCTTTCCCCCTTGTAGTTACTACACTTTATT  550

seq1  CTTTAAATATTCTGGCAATTGTCAGCCTCCTTACATGTCTATTTTCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATATTCTGGCAATTGTCAGCCTCCTTACATGTCTATTTTCATTA  600

seq1  TTTGTAAGAATTGCTTTGTTCTTTCCCAAGGCTCTACTTCATCTTCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGAATTGCTTTGTTCTTTCCCAAGGCTCTACTTCATCTTCCTCA  650

seq1  TTGGAGTTCAGTGACTTCTCAGGAGCCTGGGTGAGCCTGGGTGAACCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTCAGTGACTTCTCAGGAGCCTGGGTGAGCCTGGGTGAACCTGG  700

seq1  GGGAGCCTGGGGGAGCCTGGGTGAACCTGGGTGAGCCTGGATGAGGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTGGGGGAGCCTGGGTGAACCTGGGTGAGCCTGGATGAGGAGTT  750

seq1  GGTTTAAAAGCATTCATGAGTCGCTTTCTGTCACGTATTCTCCAAGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAAGCATTCATGAGTCGCTTTCTGTCACGTATTCTCCAAGTCTC  800

seq1  ATAACAGCATTTTATAAAGTCCTTTATGACCTTGCCAAAACTTGCTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCATTTTATAAAGTCCTTTATGACCTTGCCAAAACTTGCTTACT  850

seq1  TCTCACCTAGCAAACCTCTGATCTTTTCACTGTTTTGTTTCCTGTGCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTAGCAAACCTCTGATCTTTTCACTGTTTTGTTTCCTGTGCCTT  900

seq1  CAAGCATCAGTCTACTTCTGCCTCCTCCTGTACTTGAATTCTTTGCATTT  950
      |||||||||||||||||||||||||||||||||||||| |  ||||||||
seq2  CAAGCATCAGTCTACTTCTGCCTCCTCCTGTACTTGAAATTCTTGCATTT  950

seq1  GATACTTCAGCTGTGTTTGATTCCTTTCAAAGGCCAGAGTATGAACTACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTCAGCTGTGTTTGATTCCTTTCAAAGGCCAGAGTATGAACTACA  1000

seq1  CATCTCTTGCTACACATCGTGGAAACACTGCTAATTGCTGTCTGCTACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTGCTACACATCGTGGAAACACTGCTAATTGCTGTCTGCTACAC  1050

seq1  TTTTCTTTCTATAGAACCTTTCCAATTTCTTGTTGTTTTCCTTCTTCTGC  1100
      ||||||||||||||||||||||  ||||||   ||||||| ||| |||||
seq2  TTTTCTTTCTATAGAACCTTTC--ATTTCT--GTGTTTTCGTTC-TCTGC  1095

seq1  TTGATTCCTAAT-GAGCATCCAAGAATCACCCACTGACATTCCAGAGAAG  1149
       ||||| ||||| ||||||| |  ||||  |||||||||||| ||| | |
seq2  CTGATT-CTAATGGAGCATCAAGAAATCCACCACTGACATTCGAGA-AGG  1143

seq1  TGCA-TCTGTGT  1160
      | || |||||||
seq2  TCCATTCTGTGT  1155


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