BAC Information

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BAC

Clone NameB6Ng01-258I10
Chromosome11 (Build37)
Map Location 86,228,787 - 86,407,993
singlet/doubletdoublet
Overlap gene0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
Downstream genePtrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258I10.bB6Ng01-258I10.g
ACCGA063942GA063943
length5261,115
definitionB6Ng01-258I10.b B6Ng01-258I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,228,787 - 86,229,318)(86,406,878 - 86,407,993)
sequence
actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcc
tcccgagtgctgggattaaaggcgtgtgccaccacacctggcccacattt
taaaatttaaaaaagccctcaatacatgcacatgttaccatgcctttgca
tttctgttcttttgacttagactctcagccttgtagagatagcaagtacc
ctgctgtatccattttgtgttatctgtatgatatgagtacactgtgtgta
catgcttatgtgggtgcatttgcacatgtgtgcccatgggtaaagggcag
aggtcgatgttgtgtgtatttcttaatagatctaccttgttttttgatac
aggatcccaaactgaacatggagtttgccaattcaactaggatgtcctac
aaatgttagagatccacctgggcttacctcctcaacactgatattatgta
tagtgtataaaagtagtgtacctagcttttattcttattgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcttgcctggtagctcactccggtaatcttcacagttgggaagctg
aagcaggaggattatcatgatttccagtccagcctgagctacagagtatt
tctctgtcttaaatacagcctgatgtgtttattagcctctgttctttgaa
aaccggaatgaagatgtgtttccaaggcttgctgagagcaccacagaagg
cagtgtttgtccctcagtcttggaagtcggagatgagcatggagagccag
tctcagtctcaggcagctgtttgaatacagccagcacgatcgtttttacc
ccattacagcagaccattccttaaactcctgctttaccattgacagaagt
gcctgcctgtccttcctgctcaggtctgcattctgaagaaaccatcccaa
acattgaaaagcaagggcattgcaaaaccctgcgtgctagaaaccccttg
tgaagcacaagcgaccatatgcctgaagtgtctggaaaaagcaatgtggt
ctgtcttccaccaagcctcgaagaaagggatgctatcatgtgtataaata
atgccactgggtacacagtgacctaagttgaatacaaaagaatttttaat
tatttcagagggacacagatgcaaattaaattcaagatgttttcatccca
aaccctgaggtagaatcacagcatattttagaaggtgccagagactgtca
gtgcaaacaagtccatatataaaaggcctagaatttccagtgcagtatgt
aattctcactctacgttcattgtatgttgggatccgcttccaaaaccctg
gtgtataaagaaagccactttttcaaattccaaagaggtaaaatagtcaa
gtcaatttgccaatttttcccctggccaacatcagcttcttagattgtgt
tctatgttcagtgaaatggtaacaatagtacactttcatgcccagtaccc
agaattcctagatctacttttcacccaagtttaaaatgctggttttcagt
cagtgccagtcactcgctcgctccgcaatagttaagtacaacctgagtcc
taattttccctcctatcctcccatggccagacagtattatatttaatgag
gcctatgaggtggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86228787_86229318
seq2: B6Ng01-258I10.b_47_578

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACACCTGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACACCTGGCCC  100

seq1  ACATTTTAAAATTTAAAAAAGCCCTCAATACATGCACATGTTACCATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAAATTTAAAAAAGCCCTCAATACATGCACATGTTACCATGCC  150

seq1  TTTGCATTTCTGTTCTTTTGACTTAGACTCTCAGCCTTGTAGAGATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTCTGTTCTTTTGACTTAGACTCTCAGCCTTGTAGAGATAGCA  200

seq1  AGTACCCTGCTGTATCCATTTTGTGTTATCTGTATGATATGAGTACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCTGCTGTATCCATTTTGTGTTATCTGTATGATATGAGTACACTG  250

seq1  TGTGTACATGCTTATGTGGGTGCATTTGCACATGTGTGCCCATGGGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACATGCTTATGTGGGTGCATTTGCACATGTGTGCCCATGGGTAAA  300

seq1  GGGCAGAGGTCGATGTTGTGTGTATTTCTTAATAGATCTACCTTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGGTCGATGTTGTGTGTATTTCTTAATAGATCTACCTTGTTTTT  350

seq1  TGATACAGGATCCCAAACTGAACATGGAGTTTGCCAATTCAACTAGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGGATCCCAAACTGAACATGGAGTTTGCCAATTCAACTAGGATG  400

seq1  TCCTACAAATGTTAGAGATCCACCTGGGCTTACCTCCTCAACACTGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAAATGTTAGAGATCCACCTGGGCTTACCTCCTCAACACTGATAT  450

seq1  TATGTATAGTGTATAAAAGTAGTGTACCTAGCTTTTATTCTTATTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATAGTGTATAAAAGTAGTGTACCTAGCTTTTATTCTTATTGTGTG  500

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  532
      ||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  532

seq1: chr11_86406878_86407993
seq2: B6Ng01-258I10.g_72_1186 (reverse)

seq1  GGCCACCTCATAAGCCTTCATTAATATTAATACCTGTCCTGCCCATTGGA  50
      |||||||||||| ||| |||||||   ||||| |||| ||| |||| |||
seq2  GGCCACCTCATAGGCC-TCATTAAATATAATA-CTGT-CTGGCCATGGGA  47

seq1  GATTAGAGGGAAAAAATAAGACATCAGTTGTTACCTAACTATTGCGGGAG  100
      |  |||  || |||| || ||| |||| |  ||| |||||||||| ||||
seq2  GGATAGGAGGGAAAATTAGGAC-TCAGGTTGTACTTAACTATTGC-GGAG  95

seq1  CGAGCGAGTGGACTGGCACTGACTGAAAACCAGCATTTTTAACTT-GGTG  149
      ||||||||| ||||||||||||||||||||||||||||| ||||| ||||
seq2  CGAGCGAGT-GACTGGCACTGACTGAAAACCAGCATTTTAAACTTGGGTG  144

seq1  AAAGTAAGATCTAGGAATTCTGGGTACTGGGCATGAAAGTGTTACTATTG  199
      |||   ||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAAGTAGATCTAGGAATTCTGGGTACTGGGCATGAAAGTG-TACTATTG  193

seq1  TTACCATTTCACTGAACATAGAACACAATCTAAGAAGCTGATGTT-GCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTACCATTTCACTGAACATAGAACACAATCTAAGAAGCTGATGTTGGCCA  243

seq1  GGG--AAAATTGGCAAATTGACTTGACTATTTTACCTCTTTTGAATTTG-  295
      |||  |||||||||||||||||||||||||||||||||||| ||||||| 
seq2  GGGGAAAAATTGGCAAATTGACTTGACTATTTTACCTCTTTGGAATTTGA  293

seq1  AAAAGT-GCTTTCTTTATACACCAGGGTTTTGGAAGCGGATCCCAACATA  344
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGCTTTCTTTATACACCAGGGTTTTGGAAGCGGATCCCAACATA  343

seq1  CAATGAACGTAGAGTGAGAATTACATACTGCACTGGAAATTCTAGGCCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACGTAGAGTGAGAATTACATACTGCACTGGAAATTCTAGGCCTT  393

seq1  TTATATATGGACTTGTTTGCACTGACAGTCTCTGGCACCTTCTAAAATTT  444
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTATATATGGACTTGTTTGCACTGACAGTCTCTGGCACCTTCTAAAATAT  443

seq1  GCTGTGATTCTACCTCAGGGTTTGGGATGAAAACATCTTGAATTTAATTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATTCTACCTCAGGGTTTGGGATGAAAACATCTTGAATTTAATTT  493

seq1  GCATCTGTGTCCCTCTGAAATAATTAAAAATTCTTTTGTATTCAACTTAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTGTCCCTCTGAAATAATTAAAAATTCTTTTGTATTCAACTTAG  543

seq1  GTCACTGTGTACCCAGTGGCATTATTTATACACATGATAGCATCCCTTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGTACCCAGTGGCATTATTTATACACATGATAGCATCCCTTTC  593

seq1  TTCGAGGCTTGGTGGAAGACAGACCACATTGCTTTTTCCAGACACTTCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCTTGGTGGAAGACAGACCACATTGCTTTTTCCAGACACTTCAG  643

seq1  GCATATGGTCGCTTGTGCTTCACAAGGGGTTTCTAGCACGCAGGGTTTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGTCGCTTGTGCTTCACAAGGGGTTTCTAGCACGCAGGGTTTTG  693

seq1  CAATGCCCTTGCTTTTCAATGTTTGGGATGGTTTCTTCAGAATGCAGACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCTTGCTTTTCAATGTTTGGGATGGTTTCTTCAGAATGCAGACC  743

seq1  TGAGCAGGAAGGACAGGCAGGCACTTCTGTCAATGGTAAAGCAGGAGTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGAAGGACAGGCAGGCACTTCTGTCAATGGTAAAGCAGGAGTTT  793

seq1  AAGGAATGGTCTGCTGTAATGGGGTAAAAACGATCGTGCTGGCTGTATTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGGTCTGCTGTAATGGGGTAAAAACGATCGTGCTGGCTGTATTC  843

seq1  AAACAGCTGCCTGAGACTGAGACTGGCTCTCCATGCTCATCTCCGACTTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGCCTGAGACTGAGACTGGCTCTCCATGCTCATCTCCGACTTC  893

seq1  CAAGACTGAGGGACAAACACTGCCTTCTGTGGTGCTCTCAGCAAGCCTTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTGAGGGACAAACACTGCCTTCTGTGGTGCTCTCAGCAAGCCTTG  943

seq1  GAAACACATCTTCATTCCGGTTTTCAAAGAACAGAGGCTAATAAACACAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACATCTTCATTCCGGTTTTCAAAGAACAGAGGCTAATAAACACAT  993

seq1  CAGGCTGTATTTAAGACAGAGAAATACTCTGTAGCTCAGGCTGGACTGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTATTTAAGACAGAGAAATACTCTGTAGCTCAGGCTGGACTGGA  1043

seq1  AATCATGATAATCCTCCTGCTTCAGCTTCCCAACTGTGAAGATTACCGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGATAATCCTCCTGCTTCAGCTTCCCAACTGTGAAGATTACCGGA  1093

seq1  GTGAGCTACCAGGCAAGAATTC  1116
      ||||||||||||||||||||||
seq2  GTGAGCTACCAGGCAAGAATTC  1115