BAC Information

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BAC

Clone NameB6Ng01-260H14
Chromosome11 (Build37)
Map Location 120,292,500 - 120,423,268
singlet/doubletdoublet
Overlap geneNploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb
Upstream geneLOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik
Downstream geneArhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260H14.bB6Ng01-260H14.g
ACCGA065389GA065390
length9921,132
definitionB6Ng01-260H14.b B6Ng01-260H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,292,500 - 120,293,404)(120,422,113 - 120,423,268)
sequence
gaattccaggacagccagggctacatagagaaaccctgtctcaaaaaaca
aaacaacaacaaaaaaaagaatcagggaaggaaggggtggcctgaagaga
tggctcaggggctaagagcaaaggctgctcttctaaaagacccaggttcc
attccaaacttatgtagcagctcacaaccacctgtaacccagttccaagg
gggatctgacaactattctggcctccacgggtactagacatacatatgtg
gtacacatatcctcatccgcatacctaaaaataacaaaattgccagaatc
tcccattgttctatttaataaacaagcatgcaggcaaatgtctacagacc
tggcaacacatgcaagcaaaacatccatatacctaaaaaaaaaaaatcgg
gagaggggcatggctggagagatgggtcagctgtttaaaacatttaaaac
attgcagaagacctggaatcagttaccaacaccacctgaaactccagttc
agaagaatccaacaccctcttttggtcatcatggacattgcacaaatgta
gtatacaaacatacatgcaagcaaaatactcatatacataagataaaaat
aaatcaaatcaaaaaagccaggcgtggtggatatgcctttaatcccagca
gaggcaggcagatttctgtgagtttgaggccagccttgtctacaaagtga
gttccaggatagccagggctatacagagaaaccctgtctcgagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagagaggaaagggagaagaaagaaagaaagaagaagaaaga
agaagaaagaaaggaaggaggaagataggtagataaatcaaatcagaagg
ctgaggcagacagacctttctgaattcaaaccagcatgtgaggacagcct
ggtggtctacaaaagagttccaggtcagtcagccctaagtag
gaattcactctgcagattaggattgcctcaaactgagagatccaccctcc
tctgcctcctgaatgctggaatcaaagttgtacgccagcactgcacagct
gattcctgttattgtgtacttaaacttctagccaattgtctgttgtttgc
tctgtggataccacacactagttactagactagagagtagacataggctg
cctcccactcagtagatctatacctaggaagctcggcttgcttatgactg
ttaaccttgatgttgctgatatggaggaagcagaaggcagatcaggattt
gatagggtggagcttgaggtccacctagaaatcctgttgaagtgagaggt
atactggccccaagggacctattggggagtagagtaagtgctgccttctg
tccatatgcagtactctgcactccacacacagcctggcaaagtaaccaac
ggctgctgtgctgcagcttgtgctgggcctgttgtccctgcctgggctgg
ggctctgcaggttcctagcaccattcctggttggctggggttcctgactg
gaagacatgccgtgtcttgccttatacacaaccaggccactgctggtgat
ggtggccaggtccttggtgatcagcgagtgctggtttcactgaggacagc
cagagtgtagctttgttcctttaactgccccttccttcatccaggacctc
gacctagaagaagctttagagccagacatggaggaagacgacgatcagaa
agctgtgaaggatgaactgtagtgcagaagccagatctgggcgcctgaac
ccaaaacctcggtgggccacgctcccagcagcccacatctccggagcctg
agcctcaccccaggagggagcgccatcagaacccagggaatctttctgaa
gccacactcatctgacacacgtacacttagacctgtctcttcttttgctt
ttcatttggaaagggatctctgtccaggtcagcccctctgaaggctacct
tttgtttatgtgtgtacttttttgtatgtgaattgtcccatgtgctgcta
aatgttgggatctcctcccactggtatgtcttctgtagagagtttatgct
acactcgcattcatctgtgaagcaatcatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120292500_120293404
seq2: B6Ng01-260H14.b_47_953

seq1  GAATTCCAGGACAGCCAGGGCTACATAGAGAAACCCTGTCTCAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACATAGAGAAACCCTGTCTCAAAAAACA  50

seq1  AAACAACAACAAAAAAAAGAATCAGGGAAGGAAGGGGTGGCCTGAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAACAAAAAAAAGAATCAGGGAAGGAAGGGGTGGCCTGAAGAGA  100

seq1  TGGCTCAGGGGCTAAGAGCAAAGGCTGCTCTTCTAAAAGACCCAGGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGGGGCTAAGAGCAAAGGCTGCTCTTCTAAAAGACCCAGGTTCC  150

seq1  ATTCCAAACTTATGTAGCAGCTCACAACCACCTGTAACCCAGTTCCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAACTTATGTAGCAGCTCACAACCACCTGTAACCCAGTTCCAAGG  200

seq1  GGGATCTGACAACTATTCTGGCCTCCACGGGTACTAGACATACATATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGACAACTATTCTGGCCTCCACGGGTACTAGACATACATATGTG  250

seq1  GTACACATATCCTCATCCGCATACCTAAAAATAACAAAATTGCCAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACATATCCTCATCCGCATACCTAAAAATAACAAAATTGCCAGAATC  300

seq1  TCCCATTGTTCTATTTAATAAACAAGCATGCAGGCAAATGTCTACAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGTTCTATTTAATAAACAAGCATGCAGGCAAATGTCTACAGACC  350

seq1  TGGCAACACATGCAAGCAAAACATCCATATACCTAAAAAAAAAAAATCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACACATGCAAGCAAAACATCCATATACCTAAAAAAAAAAAATCGG  400

seq1  GAGAGGGGCATGGCTGGAGAGATGGGTCAGCTGTTTAAAACATTTAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGCATGGCTGGAGAGATGGGTCAGCTGTTTAAAACATTTAAAAC  450

seq1  ATTGCAGAAGACCTGGAATCAGTTACCAACACCACCTGAAACTCCAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGAAGACCTGGAATCAGTTACCAACACCACCTGAAACTCCAGTTC  500

seq1  AGAAGAATCCAACACCCTCTTTTGGTCATCATGGACATTGCACAAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATCCAACACCCTCTTTTGGTCATCATGGACATTGCACAAATGTA  550

seq1  GTATACAAACATACATGCAAGCAAAATACTCATATACATAAGATAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAAACATACATGCAAGCAAAATACTCATATACATAAGATAAAAAT  600

seq1  AAATCAAATCAAAAAAGCCAGGCGTGGTGGATATGCCTTTAATCCCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATCAAAAAAGCCAGGCGTGGTGGATATGCCTTTAATCCCAGCA  650

seq1  GAGGCAGGCAGATTTCTGTGAGTTTGAGGCCAGCCTTGTCTACAAAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCAGATTTCTGTGAGTTTGAGGCCAGCCTTGTCTACAAAGTGA  700

seq1  GTTCCAGGATAGCCAGGGCTATACAGAGAAACCCTGTCTCGAGAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGATAGCCAGGGCTATACAGAGAAACCCTGTCTCGAGAAAGAAA  750

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  800

seq1  AAGAGAGGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGA--AAGAAAG  848
      |||| || ||  || |||||  || ||||||||||||||||  |||||||
seq2  AAGAAAGAAAGAGAGGAAAGGGAG-AAGAAAGAAAGAAAGAAGAAGAAAG  849

seq1  A--AAGAAAGAAAGGAAGGAAGGAAGATAGGTAGATAAATCAAATCAGAA  896
      |  |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGAAGAAAGAAAGGAAGG-AGGAAGATAGGTAGATAAATCAAATCAGAA  898

seq1  GGCTGAGGC  905
      |||||||||
seq2  GGCTGAGGC  907

seq1: chr11_120422113_120423268
seq2: B6Ng01-260H14.g_65_1196 (reverse)

seq1  AAGATGAAATGCCTCACAGATGAAATGCGAAGTGGTAGCATAAACCTCTC  50
      |||||| | ||| ||||||||| |||||| ||| |||||||||| |||||
seq2  AAGATG-ATTGCTTCACAGATG-AATGCG-AGT-GTAGCATAAA-CTCTC  45

seq1  TAACAGGAAAGACATTACCAGTGTGAGGAGATCCCCAAACATTTTAGCAA  100
      | ||||  |||||| |||||||| |||||||||||  |||| |||||| |
seq2  T-ACAG--AAGACA-TACCAGTGGGAGGAGATCCC--AACA-TTTAGC-A  87

seq1  GCACATGGGACAAATTCCACATACAAAAAAGTACACCACCAATTAAAACA  150
      |||||||||||||  | |||||||||||||||||| |||  ||  |||||
seq2  GCACATGGGACAA--TTCACATACAAAAAAGTACA-CAC--AT--AAACA  130

seq1  AAAGGTAGCCCTTCAAGAGGGGCTGACCTGGACAGAGATCCCTTTCCAAA  200
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGGTAG-CCTTC-AGAGGGGCTGACCTGGACAGAGATCCCTTTCCAAA  178

seq1  ATTGAAAAGCAAAAGAAGAGACAGGTCTAAGTGTACGTGTGTCAGATGAG  250
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --TGAAAAGCAAAAGAAGAGACAGGTCTAAGTGTACGTGTGTCAGATGAG  226

seq1  TGTGGCTTCAGAAAGATTCCCTGGGTTCTGATGGCGCTCCCTCCTGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTCAGAAAGATTCCCTGGGTTCTGATGGCGCTCCCTCCTGGGGT  276

seq1  GAGGCTCAGGCTCCGGAGATGTGGGCTGCTGGGAGCGTGGCCCACCGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAGGCTCCGGAGATGTGGGCTGCTGGGAGCGTGGCCCACCGAGG  326

seq1  TTTTGGGTTCAGGCGCCCAGATCTGGCTTCTGCACTACAGTTCATCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTTCAGGCGCCCAGATCTGGCTTCTGCACTACAGTTCATCCTTC  376

seq1  ACAGCTTTCTGATCGTCGTCTTCCTCCATGTCTGGCTCTAAAGCTTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTCTGATCGTCGTCTTCCTCCATGTCTGGCTCTAAAGCTTCTTC  426

seq1  TAGGTCGAGGTCCTGGATGAAGGAAGGGGCAGTTAAAGGAACAAAGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCGAGGTCCTGGATGAAGGAAGGGGCAGTTAAAGGAACAAAGCTAC  476

seq1  ACTCTGGCTGTCCTCAGTGAAACCAGCACTCGCTGATCACCAAGGACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGCTGTCCTCAGTGAAACCAGCACTCGCTGATCACCAAGGACCTG  526

seq1  GCCACCATCACCAGCAGTGGCCTGGTTGTGTATAAGGCAAGACACGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATCACCAGCAGTGGCCTGGTTGTGTATAAGGCAAGACACGGCAT  576

seq1  GTCTTCCAGTCAGGAACCCCAGCCAACCAGGAATGGTGCTAGGAACCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCAGTCAGGAACCCCAGCCAACCAGGAATGGTGCTAGGAACCTGC  626

seq1  AGAGCCCCAGCCCAGGCAGGGACAACAGGCCCAGCACAAGCTGCAGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCAGCCCAGGCAGGGACAACAGGCCCAGCACAAGCTGCAGCACA  676

seq1  GCAGCCGTTGGTTACTTTGCCAGGCTGTGTGTGGAGTGCAGAGTACTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCGTTGGTTACTTTGCCAGGCTGTGTGTGGAGTGCAGAGTACTGCA  726

seq1  TATGGACAGAAGGCAGCACTTACTCTACTCCCCAATAGGTCCCTTGGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACAGAAGGCAGCACTTACTCTACTCCCCAATAGGTCCCTTGGGGC  776

seq1  CAGTATACCTCTCACTTCAACAGGATTTCTAGGTGGACCTCAAGCTCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATACCTCTCACTTCAACAGGATTTCTAGGTGGACCTCAAGCTCCAC  826

seq1  CCTATCAAATCCTGATCTGCCTTCTGCTTCCTCCATATCAGCAACATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAAATCCTGATCTGCCTTCTGCTTCCTCCATATCAGCAACATCAA  876

seq1  GGTTAACAGTCATAAGCAAGCCGAGCTTCCTAGGTATAGATCTACTGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACAGTCATAAGCAAGCCGAGCTTCCTAGGTATAGATCTACTGAGT  926

seq1  GGGAGGCAGCCTATGTCTACTCTCTAGTCTAGTAACTAGTGTGTGGTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGCCTATGTCTACTCTCTAGTCTAGTAACTAGTGTGTGGTATC  976

seq1  CACAGAGCAAACAACAGACAATTGGCTAGAAGTTTAAGTACACAATAACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCAAACAACAGACAATTGGCTAGAAGTTTAAGTACACAATAACA  1026

seq1  GGAATCAGCTGTGCAGTGCTGGCGTACAACTTTGATTCCAGCATTCAGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGCTGTGCAGTGCTGGCGTACAACTTTGATTCCAGCATTCAGGA  1076

seq1  GGCAGAGGAGGGTGGATCTCTCAGTTTGAGGCAATCCTAATCTGCAGAGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGAGGGTGGATCTCTCAGTTTGAGGCAATCCTAATCTGCAGAGT  1126

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1132