BAC Information

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BAC

Clone NameB6Ng01-260J18
Chromosome11 (Build37)
Map Location 121,686,451 - 121,842,355
singlet/doubletdoublet
Overlap genePtchd3, LOC667879, LOC674842
Upstream geneCcdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260J18.bB6Ng01-260J18.g
ACCGA065488GA065489
length1,0951,117
definitionB6Ng01-260J18.b B6Ng01-260J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,841,256 - 121,842,355)(121,686,451 - 121,687,584)
sequence
gaattcatggctttttcacaagtccatgtactccttacctatctatgagg
ttgtgccttctgaggtttctgggtacctaaatttcatattataaactgaa
aatatcctttatcattccccaaatcttgctgaccattgtcctgtctgctg
ctttttccatgctagtaaatagcaggtggtgagctgcattgagacactga
catggaaggactcgttagatcatgttataatgtaactcggtgcagataac
ctacatatatgcaggatattattgtggggtataatttgaaatacaattta
gactttgttgtgcctgccaattggtattccttaaaaaagatggtcttgtt
tgtttctcttcctttttaaccttttaaaagtgttttgctcctaccctgag
cttttgcttaggctattttctttccagtgctgtctacatgctcatctaac
ttactatctttttttgttttgttttgttttctgagacagggtttctctgt
ttagccctggctgtcctggaactcactctgtagaccaggctggcctcaaa
ttcagaaatctgcctgtctctgcttcccaagtgttgggattaaaggtgtg
cgccaccactgtccagctgaccttcacctatttttgtcttctgaaaattt
actatgaggtcctaagtttttgatagtttgcgaaactattttactttcct
cttcttgatgctgaaggcttgcctcttctcattttttggcaactctgtct
tctggttgttacagtcagcaattttttgggtttttgctacttaagtgatt
gatatgtttaacacatttgatttgggttttttaaactttctggtttttgt
ttgtttgtttgtttgtttgtttttccgagacagggtttctctgtatagcc
tggctgtcctggaattcactttgtagaccaggctggcctcaaactcagaa
atctgcctgcctctgctcccgagtgctgggataaggtgtgtgtctccacg
cctggcaactttctgttttataatgtctctgtgtcctactatctccagtg
tcagcaatttagagatgactatagtcatctgagggagccctcatt
gaattctgtacatgaaagctctaaatacagcagtctcaataactgtgcca
acctttttactactgcccatgctttgtgtttgatctcccctgagaatcgc
ctggttcctaacctaatttgtaatatagacaagaaagaagactgcctttt
gttgtggccttccaaaacaaatgatctcaggtcctaacttatatttctga
gatgcttcactttaattattaaagcaaataggtcagtttgataatatatt
tatgtttcccagtttctttttctgcctgccaaaatattattggttcatta
aaattagattaaatgtgaataatataacaatgtcacagctaataatttta
tattggcagttgtatttctatatttctttaaacctgataaagtagttttt
ctatacaagttgattgttttttgtttttgaagggcaactaagtaaagttt
attgaaaattaaagaaatgtctccctgaaactggaagagggctaaagccc
aatttcccccaaattcactgctcttagacaccaaaataaatatgtatcta
cctaaatctttcacatatgtttttaatgcattatttcccactcaagtttg
gcctatgctcagatccactcactgggttcagaataagtggtagaaatggc
atgaaaaatctattgttagttcctcttctaaacaagacaaagccgaaaag
tagacctggagccttggaccccttaaaattgtctttatgtgtttagactt
ggagagggaagttgttacacagacttcttaagcggactcattttgtatct
ttttctttccttttgtttgtttttctagatagggtttctcccggtaccaa
ccagccctggctgatcaggctggcctctagctcaagagattcacctaact
ctgtctcctgagtgctggctttaaatgtgtataccactattcctagctac
ttattttgtattttttaagtctattttgtgtgactcttgttgtagattag
tttgatgttgcgtatgttatgggttcccaattggaggagatctgcatgta
gacgttgaggttctgcctcagtgattcattggtaaataaggttggcaagg
ttcattagctgggcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_121841256_121842355
seq2: B6Ng01-260J18.b_44_1138 (reverse)

seq1  AATGA-GGCTCCCTCAGATGACTATAGTCATCTCTAAAATGCTGACAACT  49
      ||||| |||||||||||||||||||||||||||||||| ||||||| |||
seq2  AATGAGGGCTCCCTCAGATGACTATAGTCATCTCTAAATTGCTGAC-ACT  49

seq1  GAAGATAATTAGGACACAGAGACAATAATAAAACAGAAAGTTGCCAGGCG  99
      | |||| | |||||||||||||| || |||||||||||||||||||||||
seq2  GGAGAT-AGTAGGACACAGAGAC-ATTATAAAACAGAAAGTTGCCAGGCG  97

seq1  TGGAGACACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGA  149
      ||||||||||||||||  |||||||||||||||| |||||||||||||||
seq2  TGGAGACACACACCTT--ATCCCAGCACTCGGGA-GCAGAGGCAGGCAGA  144

seq1  TTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAATTCCAGGACAGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAATTCCAGGACAGCC  194

seq1  AGGCTATACAGAGAAACCCTGTCTCGGAAAAACAAACAAACAAACAAACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATACAGAGAAACCCTGTCTCGGAAAAACAAACAAACAAACAAACA  244

seq1  AACAAAAACCAGAAAGTTTAAAAAACCCAAATCAAATGTGTTAAACATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACCAGAAAGTTTAAAAAACCCAAATCAAATGTGTTAAACATAT  294

seq1  CAATCACTTAAGTAGCAAAAACCCAAAAAATTGCTGACTGTAACAACCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACTTAAGTAGCAAAAACCCAAAAAATTGCTGACTGTAACAACCAG  344

seq1  AAGACAGAGTTGCCAAAAAATGAGAAGAGGCAAGCCTTCAGCATCAAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGTTGCCAAAAAATGAGAAGAGGCAAGCCTTCAGCATCAAGAA  394

seq1  GAGGAAAGTAAAATAGTTTCGCAAACTATCAAAAACTTAGGACCTCATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGTAAAATAGTTTCGCAAACTATCAAAAACTTAGGACCTCATAG  444

seq1  TAAATTTTCAGAAGACAAAAATAGGTGAAGGTCAGCTGGACAGTGGTGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTCAGAAGACAAAAATAGGTGAAGGTCAGCTGGACAGTGGTGGC  494

seq1  GCACACCTTTAATCCCAACACTTGGGAAGCAGAGACAGGCAGATTTCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTTTAATCCCAACACTTGGGAAGCAGAGACAGGCAGATTTCTGA  544

seq1  ATTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  594

seq1  AACAGAGAAACCCTGTCTCAGAAAACAAAACAAAACAAAAAAAGATAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAACCCTGTCTCAGAAAACAAAACAAAACAAAAAAAGATAGTA  644

seq1  AGTTAGATGAGCATGTAGACAGCACTGGAAAGAAAATAGCCTAAGCAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATGAGCATGTAGACAGCACTGGAAAGAAAATAGCCTAAGCAAAA  694

seq1  GCTCAGGGTAGGAGCAAAACACTTTTAAAAGGTTAAAAAGGAAGAGAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGTAGGAGCAAAACACTTTTAAAAGGTTAAAAAGGAAGAGAAAC  744

seq1  AAACAAGACCATCTTTTTTAAGGAATACCAATTGGCAGGCACAACAAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGACCATCTTTTTTAAGGAATACCAATTGGCAGGCACAACAAAGT  794

seq1  CTAAATTGTATTTCAAATTATACCCCACAATAATATCCTGCATATATGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTGTATTTCAAATTATACCCCACAATAATATCCTGCATATATGTA  844

seq1  GGTTATCTGCACCGAGTTACATTATAACATGATCTAACGAGTCCTTCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTGCACCGAGTTACATTATAACATGATCTAACGAGTCCTTCCAT  894

seq1  GTCAGTGTCTCAATGCAGCTCACCACCTGCTATTTACTAGCATGGAAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTCTCAATGCAGCTCACCACCTGCTATTTACTAGCATGGAAAAA  944

seq1  GCAGCAGACAGGACAATGGTCAGCAAGATTTGGGGAATGATAAAGGATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGACAGGACAATGGTCAGCAAGATTTGGGGAATGATAAAGGATAT  994

seq1  TTTCAGTTTATAATATGAAATTTAGGTACCCAGAAACCTCAGAAGGCACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTATAATATGAAATTTAGGTACCCAGAAACCTCAGAAGGCACA  1044

seq1  ACCTCATAGATAGGTAAGGAGTACATGGACTTGTGAAAAAGCCATGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATAGATAGGTAAGGAGTACATGGACTTGTGAAAAAGCCATGAATT  1094

seq1  C  1100
      |
seq2  C  1095

seq1: chr11_121686451_121687584
seq2: B6Ng01-260J18.g_67_1183

seq1  GAATTCTGTACATGAAAGCTCTAAATACAGCAGTCTCAATAACTGTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACATGAAAGCTCTAAATACAGCAGTCTCAATAACTGTGCCA  50

seq1  ACCTTTTTACTACTGCCCATGCTTTGTGTTTGATCTCCCCTGAGAATCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTACTACTGCCCATGCTTTGTGTTTGATCTCCCCTGAGAATCGC  100

seq1  CTGGTTCCTAACCTAATTTGTAATATAGACAAGAAAGAAGACTGCCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCTAACCTAATTTGTAATATAGACAAGAAAGAAGACTGCCTTTT  150

seq1  GTTGTGGCCTTCCAAAACAAATGATCTCAGGTCCTAACTTATATTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGCCTTCCAAAACAAATGATCTCAGGTCCTAACTTATATTTCTGA  200

seq1  GATGCTTCACTTTAATTATTAAAGCAAATAGGTCAGTTTGATAATATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTCACTTTAATTATTAAAGCAAATAGGTCAGTTTGATAATATATT  250

seq1  TATGTTTCCCAGTTTCTTTTTCTGCCTGCCAAAATATTATTGGTTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCCCAGTTTCTTTTTCTGCCTGCCAAAATATTATTGGTTCATTA  300

seq1  AAATTAGATTAAATGTGAATAATATAACAATGTCACAGCTAATAATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGATTAAATGTGAATAATATAACAATGTCACAGCTAATAATTTTA  350

seq1  TATTGGCAGTTGTATTTCTATATTTCTTTAAACCTGATAAAGTAGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCAGTTGTATTTCTATATTTCTTTAAACCTGATAAAGTAGTTTTT  400

seq1  CTATACAAGTTGATTGTTTTTTGTTTTTGAAGGGCAACTAAGTAAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAGTTGATTGTTTTTTGTTTTTGAAGGGCAACTAAGTAAAGTTT  450

seq1  ATTGAAAATTAAAGAAATGTCTCCCTGAAACTGGAAGAGGGCTAAAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAATTAAAGAAATGTCTCCCTGAAACTGGAAGAGGGCTAAAGCCC  500

seq1  AATTTCCCCCAAATTCACTGCTCTTAGACACCAAAATAAATATGTATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCCCAAATTCACTGCTCTTAGACACCAAAATAAATATGTATCTA  550

seq1  CCTAAATCTTTCACATATGTTTTTAATGCATTATTTCCCACTCAAGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCTTTCACATATGTTTTTAATGCATTATTTCCCACTCAAGTTTG  600

seq1  GCCTATGCTCAGATCCACTCACTGGGTTCAGAATAAGTGGTAGAAATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGCTCAGATCCACTCACTGGGTTCAGAATAAGTGGTAGAAATGGC  650

seq1  ATGAAAAATCTATTGTTAGTTCCTCTTCTAAACAAGACAAAGCCGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATCTATTGTTAGTTCCTCTTCTAAACAAGACAAAGCCGAAAAG  700

seq1  TAGACCTGGAGCCTTGGACCCCTTAAAATTGTCTTTATGTGTTTAGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTGGAGCCTTGGACCCCTTAAAATTGTCTTTATGTGTTTAGACTT  750

seq1  GGAGAGGGAAGTTGTTACACAGACTTCTTAAGCGGACTCATTTTGTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAAGTTGTTACACAGACTTCTTAAGCGGACTCATTTTGTATCT  800

seq1  TTTTCTTTCCTTTTGTTTGTTTTTCTAGATAGGGTTTCTCCCGGTACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCCTTTTGTTTGTTTTTCTAGATAGGGTTTCTCCCGGTACCAA  850

seq1  CCAGCCCTGGCTGATCAGGCTGGCCTCTAGCTCAAGAGATTCACCTAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTGGCTGATCAGGCTGGCCTCTAGCTCAAGAGATTCACCTAACT  900

seq1  CTGTCTCCTGAGTGCTGGCTTTAAATGTGTATACCACTATTCCTAGCTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTGAGTGCTGGCTTTAAATGTGTATACCACTATTCCTAGCTAC  950

seq1  TTATTTTGTATTTTTTAAGTCTATTTTGTGTGACTCTTTGTTGTAGATTT  1000
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  TTATTTTGTATTTTTTAAGTCTATTTTGTGTGACTC-TTGTTGTAGA-TT  998

seq1  AGTTTGATGTTTGCGTTATGTTAATTGGGTTCCCCAAATTGGAGGAGAAT  1050
      ||||||||| ||||| |||||||  |||||||||  ||||||||||||  
seq2  AGTTTGATG-TTGCG-TATGTTA--TGGGTTCCC--AATTGGAGGAGA--  1040

seq1  CCTGCATGTAAGACGTTGAGGGTTCCTGCCTCCAGTTGGTTTCCATTGGT  1100
       |||||||| |||||||||||  | |||||| ||||  | || |||||||
seq2  TCTGCATGT-AGACGTTGAGG--TTCTGCCT-CAGT--GATT-CATTGGT  1083

seq1  AAATAAAGTTGCCAGGGGTCAATAGCTGGGCAGA  1134
      |||||| |||| || || ||| ||||||||||||
seq2  AAATAAGGTTGGCAAGGTTCATTAGCTGGGCAGA  1117