BAC Information

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BAC

Clone NameB6Ng01-261J03
Chromosome11 (Build37)
Map Location 59,317,412 - 59,489,787
singlet/doubletdoublet
Overlap geneZkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749
Upstream geneOlfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565
Downstream gene4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261J03.bB6Ng01-261J03.g
ACCGA066207GA066208
length1,172901
definitionB6Ng01-261J03.b B6Ng01-261J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,488,617 - 59,489,787)(59,317,412 - 59,318,311)
sequence
ggaattccaaagttacctcttcactcttgtctctttttttaaagacagag
ttgcactatgaggctctggctgaccaaataatcttgctggagaggaaaga
ccttctcagtcctctccagaaaatcccaagaccatctgagatccaattct
aggcaacatgagtcccttccagcagcccccagtaacctcacactccagtg
agcctgcaccactgggctgtccagctttccagtcctatacccttgagctc
tcttgccaacagtccctacagctaccttagttgtttgtttgtttgtttgt
ttgtttagttcagcaactcaaatgaaatgaaagggtagaaagagtggaaa
tctcaagatttctgagagcgtgcaccagtacctgggagttcactgtcctt
acagccagaggaacatctcattgggctctaggcagctacatggctgactc
tatcacatgacagacaggccaacatctagccccaggggtgattcaaatcc
aacccactagcagaaatgcggcagtccagagatcctaccctcaggactcc
actggaaaagcgacagtagatgctcaaataaaaatctatatacaaatatt
cacagcaactctagtccatttgacaaaaggtagaaatgacccagatgcca
ttaactgaggaataaatcaacaaaatgtagtgcagtcatatcctgaaata
ttatgaattatgaaaaaagatgaatgaaattctaaatagtactcaagata
gggaaaccataagaatattagttgagtcaaggaactccgatgaaaggtct
ctatgattccattttatgaaattcccacagtgaaagaaagcagattcaaa
gtagaaagcacccggagtacgaagtgggatgcaggacagctgacagttat
gaggtgttctggggtgcagaaaacaacttcaactggagcatggcactggt
ttcatagcactgtgaatgtgttaaatgcaactgaattcaagtggcttatt
ttatgtttttatgaattacatctaagatcaaagacaaacaaaatacaaca
ggatcccacaccttttggcacaatagccaggcaggcttacagaattatgg
ctatacttcctcccctctgttcacctagcctaagagagtccttacagcct
aggctgctggggaaagaggctg
gaattcctgggaaatgtacgaagtgttggtgtggctggtccttacacatg
ggaaccgaaagaaagatgacccttcccacaagccatcactccatgaggag
tcccctaacatgtggcagtaaagaaggcagggcatttgggagaaaagtgg
tggcgattcaacaggacactggcattcccagtaccccaggagaacaagga
ggccacaggcatctatgtgtaaccaaggtttgtgatacctttgatggaca
ggtcctcctggaggataatagccccagcaggccacaatcttgaagctttg
gagtcgaagtcaccgtctctgttcttgaggtcttcacaaattgaactgga
ggaaaaaaaaatatgcaagggaagttatgcaagaccaccgtggaacaatg
tcactctgccagggacagaaactttcactctgtgctggcaaggacaaaaa
ctcccaggtacagaaggaactcagagcgttaaagtaagacttgtatttaa
aaccaccaatgctaggcctgggggtacagctcagtgtcagagttgcagct
aagactgtgcctcttccccatacagtgctttatgacaagccttacacgca
cctggtccaacacaggggctgcagaagcagctgagtggttggttgagagt
acacactacttttccctctgtccacaaagtcctgtaagtgtttcccacac
cctcttcgagcctccatgggcaccgcacccaagggcatagactcacacaa
agatatctacacaggtatacatgttattaaaaatttaaatctcaaaaaaa
atttttaagttcttgttatatagttaagtgtgcaggtgcgtgcataagtg
tgtgtgtgtgtgtgtgtgtgagtaaaaaggggctggagggaagggaaggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59488617_59489787
seq2: B6Ng01-261J03.b_45_1215 (reverse)

seq1  CAGCCTCTTCCCCCAGCAGGGCCTAGGCTTGTAGGACTCTCTTAGACTAG  50
      ||||||||| ||||||||  |||||||||   ||||||||||||| ||||
seq2  CAGCCTCTTTCCCCAGCA--GCCTAGGCTGTAAGGACTCTCTTAGGCTAG  48

seq1  TTGGAACAGAGGGGAGGAGGTATAGCCCATA--TCTGTAGGCCTGCCT-G  97
       | ||||||||||||||| |||||| |||||  |||||| |||||||| |
seq2  GT-GAACAGAGGGGAGGAAGTATAG-CCATAATTCTGTAAGCCTGCCTGG  96

seq1  CTA-TGTGCC-AAAGGTGTGGGAT-CTGTTGTATTTTTGTTTGTCTTTGA  144
      ||| |||||| ||||||||||||| |||||||| ||||||||||||||||
seq2  CTATTGTGCCAAAAGGTGTGGGATCCTGTTGTA-TTTTGTTTGTCTTTGA  145

seq1  TCTTTAAGATGTAATTCAT-AAAACATAAAATTAGCCACTTGAATTCAGT  193
      ||||  ||||||||||||| |||||||||||| |||||||||||||||||
seq2  TCTT--AGATGTAATTCATAAAAACATAAAATAAGCCACTTGAATTCAGT  193

seq1  TGCATTTAACACATTCACAGTGCTATGAAACCAGTGCCATGCTCCAGTTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAACACATTCACAGTGCTATGAAACCAGTGCCATGCTCCAGTTG  243

seq1  AAGTTGTTTTCTGCACCCCAGAACACCTCATAACTGTCAGCTGTCCTGCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTTTCTGCACCCCAGAACACCTCATAACTGTCAGCTGTCCTGCA  293

seq1  TCCCACTTCGTACTCCGGGTGCTTTCTACTTTGAATCTGCTTTCTTTCAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTCGTACTCCGGGTGCTTTCTACTTTGAATCTGCTTTCTTTCAC  343

seq1  TGTGGGAATTTCATAAAATGGAATCATAGAGACCTTTCATCGGAGTTCCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAATTTCATAAAATGGAATCATAGAGACCTTTCATCGGAGTTCCT  393

seq1  TGACTCAACTAATATTCTTATGGTTTCCCTATCTTGAGTACTATTTAGAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAACTAATATTCTTATGGTTTCCCTATCTTGAGTACTATTTAGAA  443

seq1  TTTCATTCATCTTTTTTCATAATTCATAATATTTCAGGATATGACTGCAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCATCTTTTTTCATAATTCATAATATTTCAGGATATGACTGCAC  493

seq1  TACATTTTGTTGATTTATTCCTCAGTTAATGGCATCTGGGTCATTTCTAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGTTGATTTATTCCTCAGTTAATGGCATCTGGGTCATTTCTAC  543

seq1  CTTTTGTCAAATGGACTAGAGTTGCTGTGAATATTTGTATATAGATTTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCAAATGGACTAGAGTTGCTGTGAATATTTGTATATAGATTTTT  593

seq1  ATTTGAGCATCTACTGTCGCTTTTCCAGTGGAGTCCTGAGGGTAGGATCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGCATCTACTGTCGCTTTTCCAGTGGAGTCCTGAGGGTAGGATCT  643

seq1  CTGGACTGCCGCATTTCTGCTAGTGGGTTGGATTTGAATCACCCCTGGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGCCGCATTTCTGCTAGTGGGTTGGATTTGAATCACCCCTGGGG  693

seq1  CTAGATGTTGGCCTGTCTGTCATGTGATAGAGTCAGCCATGTAGCTGCCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGTTGGCCTGTCTGTCATGTGATAGAGTCAGCCATGTAGCTGCCT  743

seq1  AGAGCCCAATGAGATGTTCCTCTGGCTGTAAGGACAGTGAACTCCCAGGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCAATGAGATGTTCCTCTGGCTGTAAGGACAGTGAACTCCCAGGT  793

seq1  ACTGGTGCACGCTCTCAGAAATCTTGAGATTTCCACTCTTTCTACCCTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGCACGCTCTCAGAAATCTTGAGATTTCCACTCTTTCTACCCTTT  843

seq1  CATTTCATTTGAGTTGCTGAACTAAACAAACAAACAAACAAACAAACAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATTTGAGTTGCTGAACTAAACAAACAAACAAACAAACAAACAAC  893

seq1  TAAGGTAGCTGTAGGGACTGTTGGCAAGAGAGCTCAAGGGTATAGGACTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGCTGTAGGGACTGTTGGCAAGAGAGCTCAAGGGTATAGGACTG  943

seq1  GAAAGCTGGACAGCCCAGTGGTGCAGGCTCACTGGAGTGTGAGGTTACTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGGACAGCCCAGTGGTGCAGGCTCACTGGAGTGTGAGGTTACTG  993

seq1  GGGGCTGCTGGAAGGGACTCATGTTGCCTAGAATTGGATCTCAGATGGTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCTGGAAGGGACTCATGTTGCCTAGAATTGGATCTCAGATGGTC  1043

seq1  TTGGGATTTTCTGGAGAGGACTGAGAAGGTCTTTCCTCTCCAGCAAGATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTTTCTGGAGAGGACTGAGAAGGTCTTTCCTCTCCAGCAAGATT  1093

seq1  ATTTGGTCAGCCAGAGCCTCATAGTGCAACTCTGTCTTTAAAAAAAGAGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCAGCCAGAGCCTCATAGTGCAACTCTGTCTTTAAAAAAAGAGA  1143

seq1  CAAGAGTGAAGAGGTAACTTTGGAATTC  1171
      ||||||||||||||||||||||||||||
seq2  CAAGAGTGAAGAGGTAACTTTGGAATTC  1171

seq1: chr11_59317412_59318311
seq2: B6Ng01-261J03.g_71_971

seq1  GAATTCCTGGGAAATGTACGAAGTGTTGGTGTGGCTGGTCCTTACACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGAAATGTACGAAGTGTTGGTGTGGCTGGTCCTTACACATG  50

seq1  GGAACCGAAAGAAAGATGACCCTTCCCACAAGCCATCACTCCATGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCGAAAGAAAGATGACCCTTCCCACAAGCCATCACTCCATGAGGAG  100

seq1  TCCCCTAACATGTGGCAGTAAAGAAGGCAGGGCATTTGGGAGAAAAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAACATGTGGCAGTAAAGAAGGCAGGGCATTTGGGAGAAAAGTGG  150

seq1  TGGCGATTCAACAGGACACTGGCATTCCCAGTACCCCAGGAGAACAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGATTCAACAGGACACTGGCATTCCCAGTACCCCAGGAGAACAAGGA  200

seq1  GGCCACAGGCATCTATGTGTAACCAAGGTTTGTGATACCTTTGATGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGGCATCTATGTGTAACCAAGGTTTGTGATACCTTTGATGGACA  250

seq1  GGTCCTCCTGGAGGATAATAGCCCCAGCAGGCCACAATCTTGAAGCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCCTGGAGGATAATAGCCCCAGCAGGCCACAATCTTGAAGCTTTG  300

seq1  GAGTCGAAGTCACCGTCTCTGTTCTTGAGGTCTTCACAAATTGAACTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGAAGTCACCGTCTCTGTTCTTGAGGTCTTCACAAATTGAACTGGA  350

seq1  GGAAAAAAAAATATGCAAGGGAAGTTATGCAAGACCACCGTGGAACAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAATATGCAAGGGAAGTTATGCAAGACCACCGTGGAACAATG  400

seq1  TCACTCTGCCAGGGACAGAAACTTTCACTCTGTGCTGGCAAGGACAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGCCAGGGACAGAAACTTTCACTCTGTGCTGGCAAGGACAAAAA  450

seq1  CTCCCAGGTACAGAAGGAACTCAGAGCGTTAAAGTAAGACTTGTATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGTACAGAAGGAACTCAGAGCGTTAAAGTAAGACTTGTATTTAA  500

seq1  AACCACCAATGCTAGGCCTGGGGGTACAGCTCAGTGTCAGAGTTGCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAATGCTAGGCCTGGGGGTACAGCTCAGTGTCAGAGTTGCAGCT  550

seq1  AAGACTGTGCCTCTTCCCCATACAGTGCTTTATGACAAGCCTTACACGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTGCCTCTTCCCCATACAGTGCTTTATGACAAGCCTTACACGCA  600

seq1  CCTGGTCCAACACAGGGGCTGCAGAAGCAGCTGAGTGGTTGGTTGAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCAACACAGGGGCTGCAGAAGCAGCTGAGTGGTTGGTTGAGAGT  650

seq1  ACACACTACTTTTCCCTCTGTCCACAAAGTCCTGTAAGTGTTTCCCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTACTTTTCCCTCTGTCCACAAAGTCCTGTAAGTGTTTCCCACAC  700

seq1  CCTCTTCGAGCCTCCATGGGCACCGCACCCAAGGGCATAGACTCACACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCGAGCCTCCATGGGCACCGCACCCAAGGGCATAGACTCACACAA  750

seq1  AGATATCTACACAGGTATACATGTTATTAAAAATTTAAATCTCAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCTACACAGGTATACATGTTATTAAAAATTTAAATCTCAAAAAAA  800

seq1  ATTTTTAAGTTCTTGTTATATAGTTAAGTGTGCAGGTGCGTGCATAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAGTTCTTGTTATATAGTTAAGTGTGCAGGTGCGTGCATAAGTG  850

seq1  TGTGTGTGTGTGTGTGTGTGAGT-AAAAGGGGCTGGAGGGAAGGGAAGGG  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGAGTAAAAAGGGGCTGGAGGGAAGGGAAGGG  900

seq1  G  900
      |
seq2  G  901