BAC Information

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BAC

Clone NameB6Ng01-262H08
Chromosome11 (Build37)
Map Location 86,234,225 - 86,359,619
singlet/doubletdoublet
Overlap gene0610013E23Rik, Rps6kb1, Tubd1
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
Downstream geneLOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262H08.bB6Ng01-262H08.g
ACCGA066869GA066870
length1,1821,066
definitionB6Ng01-262H08.b B6Ng01-262H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,358,429 - 86,359,619)(86,234,225 - 86,235,296)
sequence
gaattctttgtatacatttcacactacatggacatcagaagttagctcaa
caatagaacattcaataacattaattttctgttttctcaccaaccgtctt
ctggcccggaaagcacagttaagatcaataagcccagtcatggtggctat
acctttaattccagtactcaagagacagaggtaggcagatctctgagttt
gaggacacagagagttccaggacagccagggccacataaagaaatcctgt
ctctgaaaaccaaaaaccaaaccaactagcataaagttggatccaggcat
agtggtgcaagcctttcaacccaacaacacttgggaggctgaggcagacc
gatctctgtgagtttgcacctacacagtgcgttccaggacagccagagct
acatagcgagatcgtgtctcggaaagaaaagaaagaaaaacaaagttgga
gcttagagaaagaccagataaaatatgaaactaaatctttattattttta
aacgacgttgtttgtttttagacaacatctctctatgtagcccagttacg
cctgaaactgtctaattagtctgggctgacttgaaacacatgatccttct
gcctcagcctctcggagaacagggactattttaaaaagagtatttttgat
aagtgcttcacatcaagtctatgtagccccggaaaggagcagaggcttgt
gaaccagattttcaacttaacgtctaagactgcattgtaggtaattctat
tctcactttacagttaaggaaattgagttaccgaagggttatgtaacttt
tccaagccactgaattagcaaatagcaaagacaagagtctctctttgcct
ttcttccctatcagctccccggtaaccccacactcactgacagctctgcg
accggcagtttcagttcggttcaaacttcagaagaccaaccctctcacta
cgcgcatgctcactttcaatactttaaaaaaaaaaaactacttagacaaa
taatgcgctcgcctccttatgcgaagagctctgctgagggctgttctttt
ttcgaccctcgttcccttcttctatttagggagctaatccacgcatgtca
ttcatttatcaactcgaatatgttacgcatgcttcgtgtccggcacgcta
gacagaaatcggcaagctgttacttttccggc
gaattcttgccatttcgataactctagagaggcgaatgctttaagcattg
actcatctccgtgtgcgagagcgcttggcactggaggatgctttaatagc
tatcactctgcagagcagatgtttgtatgtttcattcgtgggcatcataa
atattaagggcgatgcttgaaaagcatttcccattaattgttaatgttca
ccgcgtggatgaaagaggggaaaatccttgggggagaatcaagtccattt
ttatgtctaacattccagtatttcaattgcagggccgaagctggggagca
ttagtctccggtttctgggctatcatctggacactctaattaagaggatg
ctccagcgcccctcactcctcagggctccacattgagacacagactgtat
gtctacgatgagagacatgtggagaaggagaggcagatgcggatcccaac
cccagctccatctcttcctggctcagtgagaatcgcagcttccttggcct
tcctgaatttagttatttaacccatgaaagttgagagtgatggccttgtg
ataattaaaataagagggaagtctagctggtcctttgcttctttgtaggt
tcttttttcttcagcccttctccctttcaacccccctctccccaactagt
aaataggagagaaaaggacagaggggaaagagctccctgaataaggtcag
gggtcagaaagggggtgacgttatcattggactgcttcctgatgattggg
ggtgtaaagttctttggcaaaagtttgatctttgcagtcaggaagatttt
cttcttgctgcttcttctctcaggaccacttaacaaaccccaactaacaa
caaccaacaaccaaccatccacccagcttctcggggccttagcattatat
accctctgaaagcccccagaattctaaatgtcacttgttgcaggaactct
ctgtgtctggcaaatcacactctgctagagcatgaggcaaatcatagtct
cctgcttcgagtagcgctaacacacggagataaaacaaaagcgtatctat
gctagttctgtgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86358429_86359619
seq2: B6Ng01-262H08.b_41_1222 (reverse)

seq1  GCCGGGAAAGT-ACAGCTTGCGCGTTTCTGTCTAAGGCGTTTGCCGGACA  49
      ||||| ||||| |||||||||   ||||||||||  |||  |||||||||
seq2  GCCGGAAAAGTAACAGCTTGCCGATTTCTGTCTA--GCG--TGCCGGACA  46

seq1  CGGAGCATGCGTACCATATCTGAAGTTGATAAATTGAAATTGAACATGCG  99
      || |||||||||| ||||| |  |||||||||| ||||  || |||||||
seq2  CGAAGCATGCGTAACATAT-TCGAGTTGATAAA-TGAA--TG-ACATGCG  91

seq1  T-GATTAGCCTTCCTAAATAGAAGAAGGGAAACGAGGGTCGAAAAAAGAC  148
      | |||||| || ||||||||||||||||| ||||||||||||||||||| 
seq2  TGGATTAG-CTCCCTAAATAGAAGAAGGG-AACGAGGGTCGAAAAAAGAA  139

seq1  AAGCCCTCAGCAGAGCTCTTCGCATAAGGA-GCGAGCGCATTTATTTGTT  197
       ||||||||||||||||||||||||||||| ||||||||| ||||||| |
seq2  CAGCCCTCAGCAGAGCTCTTCGCATAAGGAGGCGAGCGCA-TTATTTG-T  187

seq1  CTAAGTAG-TTTTTTTTTTTAAAGTATTGAAAGTGAGCATGCGCGTAGTG  246
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAGTTTTTTTTTTTTAAAGTATTGAAAGTGAGCATGCGCGTAGTG  237

seq1  AGAGGGTTGGTCTTCTGAAGTTTGAACCGAACTGAAACTGCCGGTCGCAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTGGTCTTCTGAAGTTTGAACCGAACTGAAACTGCCGGTCGCAG  287

seq1  AGCTGTCAGTGAGTGTGGGGTTACCGGGGAGCTGATAGGGAAGAAAGGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAGTGAGTGTGGGGTTACCGGGGAGCTGATAGGGAAGAAAGGCA  337

seq1  AAGAGAGACTCTTGTCTTTGCTATTTGCTAATTCAGTGGCTTGGAAAAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACTCTTGTCTTTGCTATTTGCTAATTCAGTGGCTTGGAAAAGT  387

seq1  TACATAACCCTTCGGTAACTCAATTTCCTTAACTGTAAAGTGAGAATAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAACCCTTCGGTAACTCAATTTCCTTAACTGTAAAGTGAGAATAGA  437

seq1  ATTACCTACAATGCAGTCTTAGACGTTAAGTTGAAAATCTGGTTCACAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTACAATGCAGTCTTAGACGTTAAGTTGAAAATCTGGTTCACAAG  487

seq1  CCTCTGCTCCTTTCCGGGGCTACATAGACTTGATGTGAAGCACTTATCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTCCTTTCCGGGGCTACATAGACTTGATGTGAAGCACTTATCAA  537

seq1  AAATACTCTTTTTAAAATAGTCCCTGTTCTCCGAGAGGCTGAGGCAGAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCTTTTTAAAATAGTCCCTGTTCTCCGAGAGGCTGAGGCAGAAG  587

seq1  GATCATGTGTTTCAAGTCAGCCCAGACTAATTAGACAGTTTCAGGCGTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTGTTTCAAGTCAGCCCAGACTAATTAGACAGTTTCAGGCGTAA  637

seq1  CTGGGCTACATAGAGAGATGTTGTCTAAAAACAAACAACGTCGTTTAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTACATAGAGAGATGTTGTCTAAAAACAAACAACGTCGTTTAAAA  687

seq1  ATAATAAAGATTTAGTTTCATATTTTATCTGGTCTTTCTCTAAGCTCCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAGATTTAGTTTCATATTTTATCTGGTCTTTCTCTAAGCTCCAA  737

seq1  CTTTGTTTTTCTTTCTTTTCTTTCCGAGACACGATCTCGCTATGTAGCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTCTTTCTTTTCTTTCCGAGACACGATCTCGCTATGTAGCTC  787

seq1  TGGCTGTCCTGGAACGCACTGTGTAGGTGCAAACTCACAGAGATCGGTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAACGCACTGTGTAGGTGCAAACTCACAGAGATCGGTCT  837

seq1  GCCTCAGCCTCCCAAGTGTTGTTGGGTTGAAAGGCTTGCACCACTATGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCCTCCCAAGTGTTGTTGGGTTGAAAGGCTTGCACCACTATGCC  887

seq1  TGGATCCAACTTTATGCTAGTTGGTTTGGTTTTTGGTTTTCAGAGACAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCAACTTTATGCTAGTTGGTTTGGTTTTTGGTTTTCAGAGACAGG  937

seq1  ATTTCTTTATGTGGCCCTGGCTGTCCTGGAACTCTCTGTGTCCTCAAACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTATGTGGCCCTGGCTGTCCTGGAACTCTCTGTGTCCTCAAACT  987

seq1  CAGAGATCTGCCTACCTCTGTCTCTTGAGTACTGGAATTAAAGGTATAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTGCCTACCTCTGTCTCTTGAGTACTGGAATTAAAGGTATAGC  1037

seq1  CACCATGACTGGGCTTATTGATCTTAACTGTGCTTTCCGGGCCAGAAGAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACTGGGCTTATTGATCTTAACTGTGCTTTCCGGGCCAGAAGAC  1087

seq1  GGTTGGTGAGAAAACAGAAAATTAATGTTATTGAATGTTCTATTGTTGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTGAGAAAACAGAAAATTAATGTTATTGAATGTTCTATTGTTGAG  1137

seq1  CTAACTTCTGATGTCCATGTAGTGTGAAATGTATACAAAGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTCTGATGTCCATGTAGTGTGAAATGTATACAAAGAATTC  1182

seq1: chr11_86234225_86235296
seq2: B6Ng01-262H08.g_63_1128

seq1  GAATTCTTGCCATTTCGATAACTCTAGAGAGGCGAATGCTTTAAGCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCATTTCGATAACTCTAGAGAGGCGAATGCTTTAAGCATTG  50

seq1  ACTCATCTCCGTGTGCGAGAGCGCTTGGCACTGGAGGATGCTTTAATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTCCGTGTGCGAGAGCGCTTGGCACTGGAGGATGCTTTAATAGC  100

seq1  TATCACTCTGCAGAGCAGATGTTTGTATGTTTCATTCGTGGGCATCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCTGCAGAGCAGATGTTTGTATGTTTCATTCGTGGGCATCATAA  150

seq1  ATATTAAGGGCGATGCTTGAAAAGCATTTCCCATTAATTGTTAATGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGGGCGATGCTTGAAAAGCATTTCCCATTAATTGTTAATGTTCA  200

seq1  CCGCGTGGATGAAAGAGGGGAAAATCCTTGGGGGAGAATCAAGTCCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGTGGATGAAAGAGGGGAAAATCCTTGGGGGAGAATCAAGTCCATTT  250

seq1  TTATGTCTAACATTCCAGTATTTCAATTGCAGGGCCGAAGCTGGGGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTAACATTCCAGTATTTCAATTGCAGGGCCGAAGCTGGGGAGCA  300

seq1  TTAGTCTCCGGTTTCTGGGCTATCATCTGGACACTCTAATTAAGAGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCCGGTTTCTGGGCTATCATCTGGACACTCTAATTAAGAGGATG  350

seq1  CTCCAGCGCCCCTCACTCCTCAGGGCTCCACATTGAGACACAGACTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCGCCCCTCACTCCTCAGGGCTCCACATTGAGACACAGACTGTAT  400

seq1  GTCTACGATGAGAGACATGTGGAGAAGGAGAGGCAGATGCGGATCCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACGATGAGAGACATGTGGAGAAGGAGAGGCAGATGCGGATCCCAAC  450

seq1  CCCAGCTCCATCTCTTCCTGGCTCAGTGAGAATCGCAGCTTCCTTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCCATCTCTTCCTGGCTCAGTGAGAATCGCAGCTTCCTTGGCCT  500

seq1  TCCTGAATTTAGTTATTTAACCCATGAAAGTTGAGAGTGATGGCCTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATTTAGTTATTTAACCCATGAAAGTTGAGAGTGATGGCCTTGTG  550

seq1  ATAATTAAAATAAGAGGGAAGTCTAGCTGGTCCTTTGCTTCTTTGTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAAATAAGAGGGAAGTCTAGCTGGTCCTTTGCTTCTTTGTAGGT  600

seq1  TCTTTTTTCTTCAGCCCTTCTCCCTTTCAACCCCCCTCTCCCCAACTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTTCAGCCCTTCTCCCTTTCAACCCCCCTCTCCCCAACTAGT  650

seq1  AAATAGGAGAGAAAAGGACAGAGGGGAAAGAGCTCCCTGAATAAGGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAGAGAAAAGGACAGAGGGGAAAGAGCTCCCTGAATAAGGTCAG  700

seq1  GGGTCAGAAAGGGGGTGACGTTATCATTGGACTGCTTCCTGATGATTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGAAAGGGGGTGACGTTATCATTGGACTGCTTCCTGATGATTGGG  750

seq1  GGTGTAAAGTTCTTTGGCAAAAGTTTGATCTTTGCAGTCAGGAAGATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAAGTTCTTTGGCAAAAGTTTGATCTTTGCAGTCAGGAAGATTTT  800

seq1  CTTCTTGCTGCTTCTTCTCTCAGGACCACTTAACAAACCCCAACTAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCTGCTTCTTCTCTCAGGACCACTTAACAAACCCCAACTAACAA  850

seq1  CAACCAACAACCAACCATCCACCCAGCTTCTCGGGGCCTTAGCATTTATA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAACCAACAACCAACCATCCACCCAGCTTCTCGGGGCCTTAGCA-TTATA  899

seq1  TACCCTCTGAAAGCCCCCAGAATTCTAAATGTCACTTGTTTGCAGGAACT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACCCTCTGAAAGCCCCCAGAATTCTAAATGTCACTTG-TTGCAGGAACT  948

seq1  CTCTGTGTCTGGCAAAATCACACTTCTGCTAGAGCATGAGGCAAATCATA  1000
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  CTCTGTGTCTGGC-AAATCACAC-TCTGCTAGAGCATGAGGCAAATCATA  996

seq1  GTCTCCTGCTTCGGAGTAGCGCT-ACACAC-GAGATTAAAACAAAAGCGT  1048
      |||||||||||| |||||||||| |||||| |||| ||||||||||||||
seq2  GTCTCCTGCTTC-GAGTAGCGCTAACACACGGAGA-TAAAACAAAAGCGT  1044

seq1  ATTCTTATGCTAGTTCTGTGCTTT  1072
      ||   |||||||||||||||||||
seq2  AT--CTATGCTAGTTCTGTGCTTT  1066