BAC Information

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BAC

Clone NameB6Ng01-263C22
Chromosome11 (Build37)
Map Location 97,587,388 - 97,736,877
singlet/doubletdoublet
Overlap genePip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
Upstream geneSkap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3
Downstream genePlxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263C22.bB6Ng01-263C22.g
ACCGA067414GA067415
length1,1241,153
definitionB6Ng01-263C22.b B6Ng01-263C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,735,738 - 97,736,877)(97,587,388 - 97,588,552)
sequence
gaattcagagattcacctcccactgcttcccaggtcctgagattaaagtt
gtgcaccactaacacctgacttatatatattttttaagtctgaatacagt
gttattggtttcagtatttataagtaatttggtaaatcctataattgaat
ctggtaagtatttgattattgtcttttgggtttgcactaaaggatttttt
ttttttttacccactgagatggctcagtgggtaagagcacccgactgttc
ttccaaaggtccaaagttcaaatcccagcaaccacatggtggctcacaac
catccataatgagatctgactccctcttctggagtgtctgaagacagcta
cagtgtacttacatataataaaaataaataaatcttttaaaaattaaaaa
aaaaagaaaacaacaacaaaaatgataattatatgaataattcaatttaa
aaactagatcttaacaccaaatcttcaaaataggtttgattatatattag
ctttcattttctaatcagtgttttgtagacacctgttttatggttggttc
ttttggtgaacatttgacatactcagtgttttcccatgctttcattccca
tctgatctgttcctgtttttagatattaaaataacatttttcaaaatctt
aactttgaacattataaattttaatttgcattttctgctgagtagagcag
cagatggccaatgtagaaagaatactgcatctgacattattttacttcaa
gaacttaaaagaagctgggctcttttaacaaaaagagtacctgtgtttag
aaaaaacagtcagccaaatgcaagggttttatggtaaacagaaactctta
aaaataagagatttgcagtagaaaagacaaccagtatgcagttgtatctt
gcagtccagctatgatataacatgagacacgatgcccaagacatggaaga
aaaagaactcagactaaagccaaacactgagaatactcctatagcaaaaa
taggagggtcatatttaaaatccaattctggtcatgtggtaccaacatag
ccaatcctaaaaataaactgttcctatcatcctcaagatatatatcaatt
tattatgttagctaaatgtagaga
gaattcaagtcatcaggtatggtgggtagactggatgagaacggccttcg
cgggctcagctgtttggacacttggtcctcagctggtagcattgagtggg
tagctttaggagatggggccttgctggaagaagtatgtcactgcaggggg
gctttgaggtttcaaagctacacaccagtcccagtttgctctcttggctt
cctgctttcagttcaagatgtaagctttctttcggcctgcaactctactc
cactatcatggatgctaaccccttggaactgcaagcccaaataaattctt
ctaaaaggtgtctcagtcatggtgattttccacagcactagaaaagtatc
taacagatcagcggcaaacacccttgcccactgagatgtcgcataggccc
ccaattttttaattctctgagctgtttctgtcaggtgttttgccacagca
atgagaaaagggaccaatgtacaaggaaatgcctgccactaccagagtag
acctggcctccccgccaatccctgctgctgcagctctctctttccctctc
ccaacccattctccacagcccaggcctgtgactcctcatagctgcaggca
ttacacagcccgggcgtgggcctccccatacctggtggtatttctttagg
atgttgtgcatctcggccacatcctcacttgacacagtcttgatgacgaa
acgccggtcataggtggtgaggaagcgagtgccacacctgccctggctgt
cactgttgataggtgcactgcgtgtcactgaattctgaggggtccaaaca
gaagcaattgattttgatgagaaacacagtttgtttgtttgtttgttgtt
tgttgtttgttgttcccttctctttcccacagtgctaagaggtgaactca
ggctttgtgcatgctggagaagcacccccctgctgagctacctctccatc
cctaagatcctgggcttcaactcagaacttctacagacagacaaacacgg
aggcagagtgccaggtggacgtctctagccctttttctaggtgtcatatc
ctggcctgcatgctctcagaaaaaccgagcctgctcgaccttgaaccctc
agaccagctcttggattgatgtgtgacacggtctggttctcaactcccca
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97735738_97736877
seq2: B6Ng01-263C22.b_49_1172 (reverse)

seq1  TCTCTACATTTAGCCCTTACATAATAAAATGATTATATAATCCTGAAGAA  50
      |||||||||||||  || |||||||||| ||| ||||| ||| ||| || 
seq2  TCTCTACATTTAG--CTAACATAATAAATTGA-TATAT-ATCTTGAGGA-  45

seq1  TCTATAGGAACCAAGTTTATTTTTAGAATTTGCTATGTTTGGGTACCACA  100
         ||||||||  ||||||||||||| ||| ||||||||  |||||||||
seq2  -TGATAGGAAC--AGTTTATTTTTAGGATTGGCTATGTT--GGTACCACA  90

seq1  TGACCAGAATTGGATTTTTAAATATGAACCCTCCTTATTTTTGCTTATAG  150
      |||||||||||||| ||||||||||| ||||||| ||||||||| |||| 
seq2  TGACCAGAATTGGA-TTTTAAATATG-ACCCTCC-TATTTTTGC-TATA-  135

seq1  GGAGTTATTCTCAGTGTTTGGCTTTAGTCTGAGTTCTTTTTCTTCCATGT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAG-TATTCTCAGTGTTTGGCTTTAGTCTGAGTTCTTTTTCTTCCATGT  184

seq1  CTT-GGCATCGTGTCTCATGTTATATCATAGCTGGGACTGCAAGATACAA  249
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTGGGCATCGTGTCTCATGTTATATCATAGCT-GGACTGCAAGATACAA  233

seq1  CTGCATACTGGTTGTCTTTTCTACTGCAAATCTCTTATTTTTAAGAGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATACTGGTTGTCTTTTCTACTGCAAATCTCTTATTTTTAAGAGTTT  283

seq1  CTGTTTACCATAAAACCCTTGCATTTGGCTGACTGTTTTTTCTAAACACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACCATAAAACCCTTGCATTTGGCTGACTGTTTTTTCTAAACACA  333

seq1  GGTACTCTTTTTGTTAAAAGAGCCCAGCTTCTTTTAAGTTCTTGAAGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCTTTTTGTTAAAAGAGCCCAGCTTCTTTTAAGTTCTTGAAGTAA  383

seq1  AATAATGTCAGATGCAGTATTCTTTCTACATTGGCCATCTGCTGCTCTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTCAGATGCAGTATTCTTTCTACATTGGCCATCTGCTGCTCTAC  433

seq1  TCAGCAGAAAATGCAAATTAAAATTTATAATGTTCAAAGTTAAGATTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAAAATGCAAATTAAAATTTATAATGTTCAAAGTTAAGATTTTG  483

seq1  AAAAATGTTATTTTAATATCTAAAAACAGGAACAGATCAGATGGGAATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTATTTTAATATCTAAAAACAGGAACAGATCAGATGGGAATGA  533

seq1  AAGCATGGGAAAACACTGAGTATGTCAAATGTTCACCAAAAGAACCAACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGGAAAACACTGAGTATGTCAAATGTTCACCAAAAGAACCAACC  583

seq1  ATAAAACAGGTGTCTACAAAACACTGATTAGAAAATGAAAGCTAATATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGGTGTCTACAAAACACTGATTAGAAAATGAAAGCTAATATAT  633

seq1  AATCAAACCTATTTTGAAGATTTGGTGTTAAGATCTAGTTTTTAAATTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACCTATTTTGAAGATTTGGTGTTAAGATCTAGTTTTTAAATTGA  683

seq1  ATTATTCATATAATTATCATTTTTGTTGTTGTTTTCTTTTTTTTTTAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCATATAATTATCATTTTTGTTGTTGTTTTCTTTTTTTTTTAATT  733

seq1  TTTAAAAGATTTATTTATTTTTATTATATGTAAGTACACTGTAGCTGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGATTTATTTATTTTTATTATATGTAAGTACACTGTAGCTGTCT  783

seq1  TCAGACACTCCAGAAGAGGGAGTCAGATCTCATTATGGATGGTTGTGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACTCCAGAAGAGGGAGTCAGATCTCATTATGGATGGTTGTGAGC  833

seq1  CACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTTGGAAGAACAGTCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTTGGAAGAACAGTCG  883

seq1  GGTGCTCTTACCCACTGAGCCATCTCAGTGGGTAAAAAAAAAAAAAATCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTTACCCACTGAGCCATCTCAGTGGGTAAAAAAAAAAAAAATCC  933

seq1  TTTAGTGCAAACCCAAAAGACAATAATCAAATACTTACCAGATTCAATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGCAAACCCAAAAGACAATAATCAAATACTTACCAGATTCAATTA  983

seq1  TAGGATTTACCAAATTACTTATAAATACTGAAACCAATAACACTGTATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTACCAAATTACTTATAAATACTGAAACCAATAACACTGTATTC  1033

seq1  AGACTTAAAAAATATATATAAGTCAGGTGTTAGTGGTGCACAACTTTAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAAAAAATATATATAAGTCAGGTGTTAGTGGTGCACAACTTTAAT  1083

seq1  CTCAGGACCTGGGAAGCAGTGGGAGGTGAATCTCTGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACCTGGGAAGCAGTGGGAGGTGAATCTCTGAATTC  1124

seq1: chr11_97587388_97588552
seq2: B6Ng01-263C22.g_66_1218

seq1  GAATTCAAGTCATCAGGTATGGTGGGTAGACTGGATGAGAACGGCCTTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCATCAGGTATGGTGGGTAGACTGGATGAGAACGGCCTTCG  50

seq1  CGGGCTCAGCTGTTTGGACACTTGGTCCTCAGCTGGTAGCATTGAGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTCAGCTGTTTGGACACTTGGTCCTCAGCTGGTAGCATTGAGTGGG  100

seq1  TAGCTTTAGGAGATGGGGCCTTGCTGGAAGAAGTATGTCACTGCAGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTAGGAGATGGGGCCTTGCTGGAAGAAGTATGTCACTGCAGGGGG  150

seq1  GCTTTGAGGTTTCAAAGCTACACACCAGTCCCAGTTTGCTCTCTTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGGTTTCAAAGCTACACACCAGTCCCAGTTTGCTCTCTTGGCTT  200

seq1  CCTGCTTTCAGTTCAAGATGTAAGCTTTCTTTCGGCCTGCAACTCTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTCAGTTCAAGATGTAAGCTTTCTTTCGGCCTGCAACTCTACTC  250

seq1  CACTATCATGGATGCTAACCCCTTGGAACTGCAAGCCCAAATAAATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCATGGATGCTAACCCCTTGGAACTGCAAGCCCAAATAAATTCTT  300

seq1  CTAAAAGGTGTCTCAGTCATGGTGATTTTCCACAGCACTAGAAAAGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGGTGTCTCAGTCATGGTGATTTTCCACAGCACTAGAAAAGTATC  350

seq1  TAACAGATCAGCGGCAAACACCCTTGCCCACTGAGATGTCGCATAGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATCAGCGGCAAACACCCTTGCCCACTGAGATGTCGCATAGGCCC  400

seq1  CCAATTTTTTAATTCTCTGAGCTGTTTCTGTCAGGTGTTTTGCCACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTTAATTCTCTGAGCTGTTTCTGTCAGGTGTTTTGCCACAGCA  450

seq1  ATGAGAAAAGGGACCAATGTACAAGGAAATGCCTGCCACTACCAGAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAAGGGACCAATGTACAAGGAAATGCCTGCCACTACCAGAGTAG  500

seq1  ACCTGGCCTCCCCGCCAATCCCTGCTGCTGCAGCTCTCTCTTTCCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCCTCCCCGCCAATCCCTGCTGCTGCAGCTCTCTCTTTCCCTCTC  550

seq1  CCAACCCATTCTCCACAGCCCAGGCCTGTGACTCCTCATAGCTGCAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCATTCTCCACAGCCCAGGCCTGTGACTCCTCATAGCTGCAGGCA  600

seq1  TTACACAGCCCGGGCGTGGGCCTCCCCATACCTGGTGGTATTTCTTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGCCCGGGCGTGGGCCTCCCCATACCTGGTGGTATTTCTTTAGG  650

seq1  ATGTTGTGCATCTCGGCCACATCCTCACTTGACACAGTCTTGATGACGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGCATCTCGGCCACATCCTCACTTGACACAGTCTTGATGACGAA  700

seq1  ACGCCGGTCATAGGTGGTGAGGAAGCGAGTGCCACACCTGCCCTGGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCGGTCATAGGTGGTGAGGAAGCGAGTGCCACACCTGCCCTGGCTGT  750

seq1  CACTGTTGATAGGTGCACTGCGTGTCACTGAATTCTGAGGGGTCCAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGATAGGTGCACTGCGTGTCACTGAATTCTGAGGGGTCCAAACA  800

seq1  GAAGCAATTGATTTTGATGAGAAACACAGTTTGTTTGTTTGTTTGTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAGCAATTGATTTTGATGAGAAACACAGTTTGTTTGTTTGTTTG-TTGT  849

seq1  TTGTTTGTTTGTTTGTTTCCCTTCTCTTTCCCACAGTGCTAAGAGGTGAA  900
      ||| |||||||||   ||||||||||||||||||||||||||||||||||
seq2  TTG-TTGTTTGTT--GTTCCCTTCTCTTTCCCACAGTGCTAAGAGGTGAA  896

seq1  CTCAGGGCTTTGTGCATGCTGGAGAAGCACCCCCCTGCTGAGCTACCTCT  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCA-GGCTTTGTGCATGCTGGAGAAGCACCCCCCTGCTGAGCTACCTCT  945

seq1  CCATCCCTAAGATCCT-GGCTTCAACTCAGAACTTCTACAGACAGACAAA  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCATCCCTAAGATCCTGGGCTTCAACTCAGAACTTCTACAGACAGACAAA  995

seq1  CACCGAGGCAGAGGTGCCCAGGGTGGACGTCTCCTAGCCCCTTTTTTCTT  1049
      ||| |||||||| |||||   ||||||||||| |||||||  ||||||| 
seq2  CACGGAGGCAGA-GTGCC--AGGTGGACGTCT-CTAGCCC--TTTTTCT-  1038

seq1  AGGGTGTTCATATCCCTGGCTGCAGTGCTTCTCCAGATAACCAGAG-CTG  1098
        |||| ||||||||  | ||||| ||| ||| |||| || | ||| |||
seq2  -AGGTG-TCATATCCTGGCCTGCA-TGC-TCT-CAGAAAAACCGAGCCTG  1083

seq1  CTCCGACCTTTGA-CCTCAGACGAGGCTCTGTGTTTGATGTGTGACAC-G  1146
      || |||||||  | |||||||| | |||||  | |||||||||||||| |
seq2  CT-CGACCTTGAACCCTCAGACCA-GCTCTTGGATTGATGTGTGACACGG  1131

seq1  TCT-GTTCTCA--CCCCCAGAG  1165
      ||| |||||||   ||||||||
seq2  TCTGGTTCTCAACTCCCCAGAG  1153