BAC Information

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BAC

Clone NameB6Ng01-264H01
Chromosome11 (Build37)
Map Location 71,112,827 - 71,282,528
singlet/doubletdoublet
Overlap geneLOC100043249
Upstream geneAlox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c
Downstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264H01.bB6Ng01-264H01.g
ACCGA068346GA068347
length1,1061,149
definitionB6Ng01-264H01.b B6Ng01-264H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,281,428 - 71,282,528)(71,112,827 - 71,113,942)
sequence
gaattccatgagaccctgtcataaagaggagagaggagagagacagagag
agagagacagagagagagagagatagagatttacagacaaacagagaaat
acagagagacacaaagagacagagaaaaagaggcacagagagatagagaa
acagagaaacaaacaaagatggcaatggttgctggcaccagccgctgagt
tccaaggaatctgataggatccatggaggatcagaaggatgaggtagcta
cagaacaggagtatgcagggctcacaatagctccagaatagctaagggag
gtgtgaaaaggcaagtcttatgggaagatgcttttaaaatgtggactcac
acaattgaaagatggcggaacagagctatgtgctgagaatgatgaatcta
cacccttcactgctgcatctcagccagcaagctgcaagcacaaagtcatt
cctgaggagttgtgcagccctggcatgggccacagggagaagtggggctc
cctggagctcctgcagcagcaggtcattgctgagtggccaccaacatgga
accaccgtggctgcagtctactgtgctgtttctcctgattggaggcagag
agcatgggacagcaagtggttcatcccacatctacaagctgaacagtttt
tcctggtgaaccaaactgaagggcagccagcactgaggacagggtggtgt
gcggcagcctggaactcccatggaaacatttatgactgaaaatggccagt
cctaggcccaccaacaggcacccagcatgaagcagctgcagctacagcct
gggctgcttgccctgctgagagatggaaagtgcagggcagtagcactgcc
ccacaggatacaagcacaaggtcgagctttgctgagcctcagggtgggag
acattgagggggagaggaggtatgtggcagccaagagtttgcagaaaacc
tgtcttgccccagatgccttgtctaaccacagtatcacctgatgctgaca
acagcaagtatatccaaatgagtcgcagaaattggtccatgttttatgta
tgctttcagaaatcagaaaacctgaatcagaatcaataaacttttggcat
gaatat
gaattctggccatccaaatcaagttgcaaatattttgtcgtgggctgagg
ctacttctgtcccacctccctggatgaaggaaaatgggtggccaagctct
cttagttagtataaggaacctccaggaggtggctgcccagactcatgcgc
acctcctctaaaacctgctttatgaaaattttccttgctagcacaggagt
ctcatccaaattctgtcctgcagaattagccagaagaattggagcctccc
cacttatgaccacctctatccacagcttcttttgacatctgagccaccca
cactagggtgcagccaagacagcttcagtaggctgtgtctccaaaactgg
tttctacccaaccggttaatcaacttccctgctgcttgtatctcccctga
cctctcctctcatgcctggcaatgggccccaagctgttgtccttcagttc
caggtcttctaccaggttctgccttatgccttataccctccagttttctt
tcctccctctaccaatctcctctcaacccttcacagctcccctgtctcag
gtcatagaatctcatgtcatttccttagacaattcttctcctgtcccccc
accccaccccacctccaaccacatcagaaaattccattacccttcctgga
ttctcaagctttaggcttggaaagaaaacctgtttttgttcttgctccct
tgtggcaatatgcagattgaaactacctctataatcctatctccaccaag
acctctacagctggaaaaaacagaactgtccctacttctttcaatatcag
ctctgatttcctgatttctctggcctgacccactctggaaatcagtctgg
cggttcctcagaaaattggacatagtactacttggaggatccagcaatac
ctctcctgggcataatatccaagaaggatgcccccaactggtaagaaggg
acaacatgcctccacctattgtcatagcatgccctttattttataatata
gccaggaaggctgggaaatgaacccagaatgccccttcaacagagggatt
ggaatacagataaatgtgggttacattttacacacaattgggagtactta
cttcagcttattaaaaagagtggaattcatgaagtcctagccaatggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71281428_71282528
seq2: B6Ng01-264H01.b_42_1147 (reverse)

seq1  ATATTCATTGCAAAAAGTTATTGA-TCTGATTCAAGGTTTCTGATTTCTG  49
      ||||||||  |||||  ||||||| ||||||||| | |||||||||||||
seq2  ATATTCATGCCAAAAGTTTATTGATTCTGATTCAGGTTTTCTGATTTCTG  50

seq1  -AAGCAT-CATAAACACTGGACC-ATTTCTGCGACTCATTTTGGATAT-C  95
       |||||| ||||||   |||||| |||||||||||||| ||||||||| |
seq2  AAAGCATACATAAAACATGGACCAATTTCTGCGACTCA-TTTGGATATAC  99

seq1  TTGCTGTTGTTCAGCATCAGGGTGATACTGTGGTTAGACAGGGCATCTGG  145
      ||||||||| ||||||||| |||||||||||||||||||| |||||||||
seq2  TTGCTGTTG-TCAGCATCA-GGTGATACTGTGGTTAGACAAGGCATCTGG  147

seq1  GGC-AGGCAGGTTCTCTGCAAACTCTTGGCTGCCACATACCT-CTCT-CC  192
      ||| || |||||| |||||||||||||||||||||||||||| |||| ||
seq2  GGCAAGACAGGTTTTCTGCAAACTCTTGGCTGCCACATACCTCCTCTCCC  197

seq1  CCTCATTGTCTCCCACCCTGAGGCTCAGC-AAGCTCGACCTTTGTGCTTG  241
      ||||| ||||||||||||||||||||||| |||||||||| |||||||||
seq2  CCTCAATGTCTCCCACCCTGAGGCTCAGCAAAGCTCGACC-TTGTGCTTG  246

seq1  TATCCTGTGGGGCAGTGCTACTGCCCTGCACTTTCCATCTCTCAGCAGGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTGGGGCAGTGCTACTGCCCTGCACTTTCCATCTCTCAGCAGGG  296

seq1  CAAGCAGCCCAGGCTGTAGCTGCAGCTGCTTCATGCTGGGTGCCTGTTGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGCCCAGGCTGTAGCTGCAGCTGCTTCATGCTGGGTGCCTGTTGG  346

seq1  TGGGCCTAGGACTGGCCATTTTCAGTCATAAATGTTTCCATGGGAGTTCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTAGGACTGGCCATTTTCAGTCATAAATGTTTCCATGGGAGTTCC  396

seq1  AGGCTGCCGCACACCACCCTGTCCTCAGTGCTGGCTGCCCTTCAGTTTGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCCGCACACCACCCTGTCCTCAGTGCTGGCTGCCCTTCAGTTTGG  446

seq1  TTCACCAGGAAAAACTGTTCAGCTTGTAGATGTGGGATGAACCACTTGCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAGGAAAAACTGTTCAGCTTGTAGATGTGGGATGAACCACTTGCT  496

seq1  GTCCCATGCTCTCTGCCTCCAATCAGGAGAAACAGCACAGTAGACTGCAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGCTCTCTGCCTCCAATCAGGAGAAACAGCACAGTAGACTGCAG  546

seq1  CCACGGTGGTTCCATGTTGGTGGCCACTCAGCAATGACCTGCTGCTGCAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTGGTTCCATGTTGGTGGCCACTCAGCAATGACCTGCTGCTGCAG  596

seq1  GAGCTCCAGGGAGCCCCACTTCTCCCTGTGGCCCATGCCAGGGCTGCACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCAGGGAGCCCCACTTCTCCCTGTGGCCCATGCCAGGGCTGCACA  646

seq1  ACTCCTCAGGAATGACTTTGTGCTTGCAGCTTGCTGGCTGAGATGCAGCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCAGGAATGACTTTGTGCTTGCAGCTTGCTGGCTGAGATGCAGCA  696

seq1  GTGAAGGGTGTAGATTCATCATTCTCAGCACATAGCTCTGTTCCGCCATC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGTGTAGATTCATCATTCTCAGCACATAGCTCTGTTCCGCCATC  746

seq1  TTTCAATTGTGTGAGTCCACATTTTAAAAGCATCTTCCCATAAGACTTGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTGTGTGAGTCCACATTTTAAAAGCATCTTCCCATAAGACTTGC  796

seq1  CTTTTCACACCTCCCTTAGCTATTCTGGAGCTATTGTGAGCCCTGCATAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACACCTCCCTTAGCTATTCTGGAGCTATTGTGAGCCCTGCATAC  846

seq1  TCCTGTTCTGTAGCTACCTCATCCTTCTGATCCTCCATGGATCCTATCAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCTGTAGCTACCTCATCCTTCTGATCCTCCATGGATCCTATCAG  896

seq1  ATTCCTTGGAACTCAGCGGCTGGTGCCAGCAACCATTGCCATCTTTGTTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGGAACTCAGCGGCTGGTGCCAGCAACCATTGCCATCTTTGTTT  946

seq1  GTTTCTCTGTTTCTCTATCTCTCTGTGCCTCTTTTTCTCTGTCTCTTTGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTTTCTCTATCTCTCTGTGCCTCTTTTTCTCTGTCTCTTTGT  996

seq1  GTCTCTCTGTATTTCTCTGTTTGTCTGTAAATCTCTATCTCTCTCTCTCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGTATTTCTCTGTTTGTCTGTAAATCTCTATCTCTCTCTCTCT  1046

seq1  CTGTCTCTCTCTCTCTGTCTCTCTCCTCTCTCCTCTTTATGACAGGGTCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTCTCTCTGTCTCTCTCCTCTCTCCTCTTTATGACAGGGTCT  1096

seq1  CATGGAATTC  1101
      ||||||||||
seq2  CATGGAATTC  1106

seq1: chr11_71112827_71113942
seq2: B6Ng01-264H01.g_69_1217

seq1  GAATTCTGGCCATCCAAATCAAGTTGCAAATATTTTGTCGTGGGCTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCATCCAAATCAAGTTGCAAATATTTTGTCGTGGGCTGAGG  50

seq1  CTACTTCTGTCCCACCTCCCTGGATGAAGGAAAATGGGTGGCCAAGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTGTCCCACCTCCCTGGATGAAGGAAAATGGGTGGCCAAGCTCT  100

seq1  CTTAGTTAGTATAAGGAACCTCCAGGAGGTGGCTGCCCAGACTCATGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTAGTATAAGGAACCTCCAGGAGGTGGCTGCCCAGACTCATGCGC  150

seq1  ACCTCCTCTAAAACCTGCTTTATGAAAATTTTCCTTGCTAGCACAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTCTAAAACCTGCTTTATGAAAATTTTCCTTGCTAGCACAGGAGT  200

seq1  CTCATCCAAATTCTGTCCTGCAGAATTAGCCAGAAGAATTGGAGCCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCAAATTCTGTCCTGCAGAATTAGCCAGAAGAATTGGAGCCTCCC  250

seq1  CACTTATGACCACCTCTATCCACAGCTTCTTTTGACATCTGAGCCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATGACCACCTCTATCCACAGCTTCTTTTGACATCTGAGCCACCCA  300

seq1  CACTAGGGTGCAGCCAAGACAGCTTCAGTAGGCTGTGTCTCCAAAACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGGTGCAGCCAAGACAGCTTCAGTAGGCTGTGTCTCCAAAACTGG  350

seq1  TTTCTACCCAACCGGTTAATCAACTTCCCTGCTGCTTGTATCTCCCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCCAACCGGTTAATCAACTTCCCTGCTGCTTGTATCTCCCCTGA  400

seq1  CCTCTCCTCTCATGCCTGGCAATGGGCCCCAAGCTGTTGTCCTTCAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCTCATGCCTGGCAATGGGCCCCAAGCTGTTGTCCTTCAGTTC  450

seq1  CAGGTCTTCTACCAGGTTCTGCCTTATGCCTTATACCCTCCAGTTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTCTACCAGGTTCTGCCTTATGCCTTATACCCTCCAGTTTTCTT  500

seq1  TCCTCCCTCTACCAATCTCCTCTCAACCCTTCACAGCTCCCCTGTCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTCTACCAATCTCCTCTCAACCCTTCACAGCTCCCCTGTCTCAG  550

seq1  GTCATAGAATCTCATGTCATTTCCTTAGACAATTCTTCTCCTGTCCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGAATCTCATGTCATTTCCTTAGACAATTCTTCTCCTGTCCCCCC  600

seq1  ACCCCACCCCACCTCCAACCACATCAGAAAATTCCATTACCCTTCCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCCCACCTCCAACCACATCAGAAAATTCCATTACCCTTCCTGGA  650

seq1  TTCTCAAGCTTTAGGCTTGGAAAGAAAACCTGTTTTTGTTCTTGCTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGCTTTAGGCTTGGAAAGAAAACCTGTTTTTGTTCTTGCTCCCT  700

seq1  TGTGGCAATATGCAGATTGAAACTACCTCTATAATCCTATCTCCACCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAATATGCAGATTGAAACTACCTCTATAATCCTATCTCCACCAAG  750

seq1  ACCTCTACAGCTGGAAAAAACAGAACTGTCCCTACTTCTTTCAATATCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACAGCTGGAAAAAACAGAACTGTCCCTACTTCTTTCAATATCAG  800

seq1  CTCTGATTTCCTGATTTCTCTGGCCTGACCCACTCTGGAAATCAGTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTTCCTGATTTCTCTGGCCTGACCCACTCTGGAAATCAGTCTGG  850

seq1  CGGTTCCTCAGAAAATTGGACATAGTACTAC-TGGAGGATCCAGCAATAC  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGGTTCCTCAGAAAATTGGACATAGTACTACTTGGAGGATCCAGCAATAC  900

seq1  CTCTCCTGGGCAT-ATATCC-AGAA-GATG-CCCCAACTGGTAAGAA-GG  944
      ||||||||||||| |||||| |||| |||| |||||||||||||||| ||
seq2  CTCTCCTGGGCATAATATCCAAGAAGGATGCCCCCAACTGGTAAGAAGGG  950

seq1  AC-ACATG-CTCCA-CTATGTTCATAGCA-GCC--TTA-TTTATA--ATA  985
      || ||||| ||||| ||||  |||||||| |||  ||| ||||||  |||
seq2  ACAACATGCCTCCACCTATTGTCATAGCATGCCCTTTATTTTATAATATA  1000

seq1  GCCAG--AAGCTGG--AAAGAACCCAG-ATGCCCC-TCAACAGAGGAAT-  1028
      |||||  | |||||  || |||||||| ||||||| |||||||||| || 
seq2  GCCAGGAAGGCTGGGAAATGAACCCAGAATGCCCCTTCAACAGAGGGATT  1050

seq1  -GGATACAGA-AAATGTGG--TACATTT---ACACAAT--GGAGTAC-TA  1068
       | ||||||| ||||||||  |||||||   |||||||  ||||||| ||
seq2  GGAATACAGATAAATGTGGGTTACATTTTACACACAATTGGGAGTACTTA  1100

seq1  C-TCAGC-TATTAAAAAGAAT-GAATTCATGAAATTCCTAGCCAAATGGA  1115
      | ||||| ||||||||||| | ||||||||| || |||||||| ||||||
seq2  CTTCAGCTTATTAAAAAGAGTGGAATTCATG-AAGTCCTAGCC-AATGGA  1148

seq1  T  1116
      |
seq2  T  1149