BAC Information

Click to search

BAC

Clone NameB6Ng01-265O09
Chromosome11 (Build37)
Map Location 58,410,959 - 58,534,518
singlet/doubletdoublet
Overlap geneOlfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318
Upstream geneGalnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325
Downstream geneOlfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265O09.bB6Ng01-265O09.g
ACCGA069429GA069430
length1,2061,031
definitionB6Ng01-265O09.b B6Ng01-265O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,410,959 - 58,412,163)(58,533,486 - 58,534,518)
sequence
gaattccagcaccatcaccgagctagtccttgtggggttttctgatcaac
cccagactgagattcctctcttcatcttcttctctctggtctacctagcc
agctgtttggggaatacagctgtggtcatattagtggctctcgatgtctc
tctgcagacacccatgtatttcttcctctgccacctagctttcctcaatg
gattcttcagcacggttgtgactccaaagatgctcttcaatttccttgca
agcaggaaggtcatatcttacccattctgcctggctcagacctacctcac
cctgttcttggagtcgaccgagtgctttctccttgccgtgatggccatag
atcgctacgtggccatctgctacccactgaggtaccttctcatcatgagc
tgggcagtgtgcatagcactggcagtggccgtgtgggtcacaggtttttg
tgcctcggttttacctctctgcttcatgatcctcccactctgtagccctt
acgttgttgattatcttttctgcgagctgcctatccttctgcacctgttc
tgtgcagacacgtctctgcaggaggccatgatggccgttggaggggctgg
cacggtgctggttcccttcctcctgattgcgctctcctaccttcgcatcc
tggtgactgtgataagaatagactcggctgaggggagaaagaaggccttt
tcaacctgtgcctcgcacttggctgtggtgaccatctattacggaacggg
gctcatcaggtacttgaggcccaagtccctttactccgccgagggagaca
aactgatctctgtgttctatgcggtcatcggacccgcgctgaatccattc
atctatagcctgcggaacaaggaagtgcaggtgctgtgaggagagtggtg
gagagatacaggaaaagcccaagaattgccttctagaatcttcaggattc
cagctgagtcctgtattcatttaccaacactttaacaggtcaagcccaga
gtctgtgagactcaacttgctggtccacattcaacttctcagaactcctt
cccccctgctcctaaccacacaagacaccttttctttcatgtttgtcgtc
ttatgattaatacgaatgtgtatattaggagtccaattacgtcacctgtc
aagcctcaatccaaatgggaataataggaccagacgtgtaatgtgaattg
tgcact
gaattcaccttagttggtcttttccagtatggacacatggacaccttcct
cttcacactgattgccatcctctttgcagtggctctcatgggcaacatca
cactggtcctcctcatcaggctggaccgaagactccacacccccatgtac
ttcttcctcagccagctctccatcatcgacatgatgtacatctctaccac
tgtgcccaagatggcagctaacttcctctcagacaccaaggccatttcct
ttctgggctgtgcagtccaaacctttgtgtttctgaccttgggtggatct
gaagccctcctgctgggcttcatgtcctatgacaggtatatagccatctg
ccaacccttgcactaccctgtgctcatgagtaggaagatctgctgctcca
tggtcgctggtgcctggagcagcagctccatcaatgcattcatgcacaca
gtgtatgtgtttcaacttccattctgtggctctaggatggttaaccactt
tttctgtgaggttccatctctcctgccactggtgtgtgaagacacgtccc
agtatgagcatacagtcctcgtgagtggacttgtcattctgctgctcccc
ttcctggccatcctagcttcctatgctcgggtgttggttgttgtaatcca
gatgggttcagggaagggacagagtagagctgtgtccacctgctcctcac
acctgactgtggccagcctgttctatgtcaccactctctccacctacacc
cagccacactccttacattctcctggaaagggacaaagtggtggctgtgc
tctactcaatcgtcacccctgttctgaacccattcatctacagcctgagg
aacaaggaggtcatggggggcactgaggagacaagggggtgatggagatt
gacaggggactttgggtcaggactgatatggaggcttggtttgaacgctg
cctggacagtttcaggattcatattctgttagttcatcagcttggtctca
ttactgaacaaggcacatccttcgatcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58410959_58412163
seq2: B6Ng01-265O09.b_49_1254

seq1  GAATTCCAGCACCATCACCGAGCTAGTCCTTGTGGGGTTTTCTGATCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACCATCACCGAGCTAGTCCTTGTGGGGTTTTCTGATCAAC  50

seq1  CCCAGACTGAGATTCCTCTCTTCATCTTCTTCTCTCTGGTCTACCTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTGAGATTCCTCTCTTCATCTTCTTCTCTCTGGTCTACCTAGCC  100

seq1  AGCTGTTTGGGGAATACAGCTGTGGTCATATTAGTGGCTCTCGATGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTGGGGAATACAGCTGTGGTCATATTAGTGGCTCTCGATGTCTC  150

seq1  TCTGCAGACACCCATGTATTTCTTCCTCTGCCACCTAGCTTTCCTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGACACCCATGTATTTCTTCCTCTGCCACCTAGCTTTCCTCAATG  200

seq1  GATTCTTCAGCACGGTTGTGACTCCAAAGATGCTCTTCAATTTCCTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCAGCACGGTTGTGACTCCAAAGATGCTCTTCAATTTCCTTGCA  250

seq1  AGCAGGAAGGTCATATCTTACCCATTCTGCCTGGCTCAGACCTACCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGGTCATATCTTACCCATTCTGCCTGGCTCAGACCTACCTCAC  300

seq1  CCTGTTCTTGGAGTCGACCGAGTGCTTTCTCCTTGCCGTGATGGCCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTGGAGTCGACCGAGTGCTTTCTCCTTGCCGTGATGGCCATAG  350

seq1  ATCGCTACGTGGCCATCTGCTACCCACTGAGGTACCTTCTCATCATGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTACGTGGCCATCTGCTACCCACTGAGGTACCTTCTCATCATGAGC  400

seq1  TGGGCAGTGTGCATAGCACTGGCAGTGGCCGTGTGGGTCACAGGTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTGTGCATAGCACTGGCAGTGGCCGTGTGGGTCACAGGTTTTTG  450

seq1  TGCCTCGGTTTTACCTCTCTGCTTCATGATCCTCCCACTCTGTAGCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCGGTTTTACCTCTCTGCTTCATGATCCTCCCACTCTGTAGCCCTT  500

seq1  ACGTTGTTGATTATCTTTTCTGCGAGCTGCCTATCCTTCTGCACCTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTTGATTATCTTTTCTGCGAGCTGCCTATCCTTCTGCACCTGTTC  550

seq1  TGTGCAGACACGTCTCTGCAGGAGGCCATGATGGCCGTTGGAGGGGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGACACGTCTCTGCAGGAGGCCATGATGGCCGTTGGAGGGGCTGG  600

seq1  CACGGTGCTGGTTCCCTTCCTCCTGATTGCGCTCTCCTACCTTCGCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGCTGGTTCCCTTCCTCCTGATTGCGCTCTCCTACCTTCGCATCC  650

seq1  TGGTGACTGTGATAAGAATAGACTCGGCTGAGGGGAGAAAGAAGGCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTGTGATAAGAATAGACTCGGCTGAGGGGAGAAAGAAGGCCTTT  700

seq1  TCAACCTGTGCCTCGCACTTGGCTGTGGTGACCATCTATTACGGAACGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTGTGCCTCGCACTTGGCTGTGGTGACCATCTATTACGGAACGGG  750

seq1  GCTCATCAGGTACTTGAGGCCCAAGTCCCTTTACTCCGCCGAGGGAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCAGGTACTTGAGGCCCAAGTCCCTTTACTCCGCCGAGGGAGACA  800

seq1  AACTGATCTCTGTGTTCTATGCGGTCATCGGACCCGCGCTGAATCCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATCTCTGTGTTCTATGCGGTCATCGGACCCGCGCTGAATCCATTC  850

seq1  ATCTATAGCCTGCGGAACAAGGAAGTGCAGGGTGCTGTGAGGAGAGTGGT  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATCTATAGCCTGCGGAACAAGGAAGTGCA-GGTGCTGTGAGGAGAGTGGT  899

seq1  GGAGAGATACAGGAAAAGCCCAAGAATTGCCTTCTAGAATCTTCAGGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATACAGGAAAAGCCCAAGAATTGCCTTCTAGAATCTTCAGGATT  949

seq1  CCAGCTGAGTCCTGTATTCATTTACCAACACTTTAACAGGTTCAAGCCCA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAGCTGAGTCCTGTATTCATTTACCAACACTTTAACAGG-TCAAGCCCA  998

seq1  GAGTCTGTGAGACTCAAACTTGCTGGTCACAATTTCAACTTCTCAGAACT  1050
      ||||||||||||||| |||||||||||| ||  |||||||||||||||||
seq2  GAGTCTGTGAGACTC-AACTTGCTGGTC-CACATTCAACTTCTCAGAACT  1046

seq1  CC-TCCCCCCTGCTCCTAA-CACAC-AGACA-CTTTTCTTTCATGTTTGT  1096
      || |||||||||||||||| ||||| ||||| ||||||||||||||||||
seq2  CCTTCCCCCCTGCTCCTAACCACACAAGACACCTTTTCTTTCATGTTTGT  1096

seq1  CGTCTTTATGAGTAAATACGGATGTGTATTAATTAGGAGTC--AATACGT  1144
      |||| |||||| | |||||| ||||||||  ||||||||||  | |||||
seq2  CGTC-TTATGA-TTAATACGAATGTGTAT--ATTAGGAGTCCAATTACGT  1142

seq1  CATCTGTCA--GCTCAAT-CAAATGGGGATAATAGAACCAAGAGTGT-AT  1190
      || ||||||   |||||| |||||||| ||||||| ||||   |||| ||
seq2  CACCTGTCAAGCCTCAATCCAAATGGGAATAATAGGACCAGACGTGTAAT  1192

seq1  GTGAATATGTGCACT  1205
      |||||| ||||||||
seq2  GTGAAT-TGTGCACT  1206

seq1: chr11_58533486_58534518
seq2: B6Ng01-265O09.g_69_1099 (reverse)

seq1  CTGTGATCGAAGGATTGTGCTCTTGTTCAGTTATTGAGA-CAAGCTGATG  49
      |||||||||||||| ||||| ||||||||| || ||||| ||||||||||
seq2  CTGTGATCGAAGGA-TGTGC-CTTGTTCAG-TAATGAGACCAAGCTGATG  47

seq1  AACTACCAGAATATGGATCCTGAAACTGTCCAAGGCAGCGTTCAAGACCA  99
      ||||| ||||||||| ||||||||||||||| |||||||||||||  | |
seq2  AACTAACAGAATATGAATCCTGAAACTGTCC-AGGCAGCGTTCAAACCAA  96

seq1  GCCTCCATATCAGTCCTGACCCAAAGTCCCCTGTCAATCTCCATCACCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATATCAGTCCTGACCCAAAGTCCCCTGTCAATCTCCATCACCCC  146

seq1  CTTTGTCTCCTCAGTG-CCCCCATGACCTCCTTGTTCCTCAGGCTGTAGA  198
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  C-TTGTCTCCTCAGTGCCCCCCATGACCTCCTTGTTCCTCAGGCTGTAGA  195

seq1  TGAATGGGTTCAGAACAGGGGTGACGATTGAGTAGAGCACAGCCACCACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGTTCAGAACAGGGGTGACGATTGAGTAGAGCACAGCCACCACT  245

seq1  TTGTCCC-TTCCAGGAGAATGTAAGGAGTGTGGCTGGGTGTAGGTGGAGA  297
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTTTCCAGGAGAATGTAAGGAGTGTGGCTGGGTGTAGGTGGAGA  295

seq1  GAGTGGTGACATAGAACAGGCTGGCCACAGTCAGGTGTGAGGAGCAGGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTGACATAGAACAGGCTGGCCACAGTCAGGTGTGAGGAGCAGGTG  345

seq1  GACACAGCTCTACTCTGTCCCTTCCCTGAACCCATCTGGATTACAACAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCTCTACTCTGTCCCTTCCCTGAACCCATCTGGATTACAACAAC  395

seq1  CAACACCCGAGCATAGGAAGCTAGGATGGCCAGGAAGGGGAGCAGCAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCCGAGCATAGGAAGCTAGGATGGCCAGGAAGGGGAGCAGCAGAA  445

seq1  TGACAAGTCCACTCACGAGGACTGTATGCTCATACTGGGACGTGTCTTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTCCACTCACGAGGACTGTATGCTCATACTGGGACGTGTCTTCA  495

seq1  CACACCAGTGGCAGGAGAGATGGAACCTCACAGAAAAAGTGGTTAACCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGTGGCAGGAGAGATGGAACCTCACAGAAAAAGTGGTTAACCAT  545

seq1  CCTAGAGCCACAGAATGGAAGTTGAAACACATACACTGTGTGCATGAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGCCACAGAATGGAAGTTGAAACACATACACTGTGTGCATGAATG  595

seq1  CATTGATGGAGCTGCTGCTCCAGGCACCAGCGACCATGGAGCAGCAGATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGGAGCTGCTGCTCCAGGCACCAGCGACCATGGAGCAGCAGATC  645

seq1  TTCCTACTCATGAGCACAGGGTAGTGCAAGGGTTGGCAGATGGCTATATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTCATGAGCACAGGGTAGTGCAAGGGTTGGCAGATGGCTATATA  695

seq1  CCTGTCATAGGACATGAAGCCCAGCAGGAGGGCTTCAGATCCACCCAAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATAGGACATGAAGCCCAGCAGGAGGGCTTCAGATCCACCCAAGG  745

seq1  TCAGAAACACAAAGGTTTGGACTGCACAGCCCAGAAAGGAAATGGCCTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACACAAAGGTTTGGACTGCACAGCCCAGAAAGGAAATGGCCTTG  795

seq1  GTGTCTGAGAGGAAGTTAGCTGCCATCTTGGGCACAGTGGTAGAGATGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGAGAGGAAGTTAGCTGCCATCTTGGGCACAGTGGTAGAGATGTA  845

seq1  CATCATGTCGATGATGGAGAGCTGGCTGAGGAAGAAGTACATGGGGGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTCGATGATGGAGAGCTGGCTGAGGAAGAAGTACATGGGGGTGT  895

seq1  GGAGTCTTCGGTCCAGCCTGATGAGGAGGACCAGTGTGATGTTGCCCATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTTCGGTCCAGCCTGATGAGGAGGACCAGTGTGATGTTGCCCATG  945

seq1  AGAGCCACTGCAAAGAGGATGGCAATCAGTGTGAAGAGGAAGGTGTCCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACTGCAAAGAGGATGGCAATCAGTGTGAAGAGGAAGGTGTCCAT  995

seq1  GTGTCCATACTGGAAAAGACCAACTAAGGTGAATTC  1033
      ||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATACTGGAAAAGACCAACTAAGGTGAATTC  1031