BAC Information

Click to search

BAC

Clone NameB6Ng01-266D18
Chromosome11 (Build37)
Map Location 72,389,936 - 72,537,262
singlet/doubletdoublet
Overlap geneUbe2g1, Ankfy1
Upstream geneWscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577
Downstream geneCyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266D18.bB6Ng01-266D18.g
ACCGA069680GA069681
length1,139752
definitionB6Ng01-266D18.b B6Ng01-266D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,536,124 - 72,537,262)(72,389,936 - 72,390,687)
sequence
gaattcatatttatgtaattaaaaacctcaataaacaaacaataattaac
tagaggacttcaataataaagttagttgtgctaattatctaatcctaaat
accttggactcgtctatgtttaaattagatattaaaacagttctcaggcc
ctcataacttataggtagttggaaagatttggtctatggattctgtgagg
ttctggggcaatcctaaaggaaaactccctcacaataaaaaaagagcaag
gagctcctggtagccaagtctctctttgatctcctggggaagggcaaaca
agtaacaaatagactgaatgaggaacacatggttgaaactacccaggaga
ggggccccttttccccacacacccaatagaaaaggagatggtgaagtact
gtaagacgattacatcaacctcactggtcaccaagagacacagccacagc
acacggacagcattctgcttggcaccatctgataacattttgtctcttac
tgttctaaaatgctaacttcagagaggaacaaagaaaatgcaccataaaa
acatatcatgctagctccttgggacctaaaaaagcagctagcttcaatga
agtaagcccttattgatactggctacaaaacctagtgaaccaaaaagtac
tgaatttaagtactaaagtgcttccaaaaaggagtgttgaccaaaatgta
gtataatgaaaggcaaagtcaagaatctggaggctggattctattcgtct
atatctattggctaatttacaccatcacatactctaaggtaacaaacagt
cgaagacagagaaaaccaacagcactggcaaagtggagcttaccagaaac
acaaagctacagagaaaccagcttctcctacatcacattaaagaacccca
gcagttatcacatggcagaagctgctttcccagagcctggcacaagtaag
ctttgccaccaccttgcagagcccttgaatacatctgctgtgacttgcct
ctccctaaggagctggagctgaaagcgatggccaggttcatcaattcagt
caggaacacatcatctctctgaactctaactcatcgtataagattcagcg
aagcaattgtcattgtcaccttcagatcgcaatctagtt
gaattcagtccggcagtaagttgggggactgtaaactagtcgtacctgct
gacccactagggtacattccaggcagaggtggaaccacgctgtgtgctca
gcgtagatccggcgcgcagccagtaggtcgagctcgccacctatagcttc
ctggaagttggcccgggcagagtctgtctgatatccactcaggaaaagag
aaagccccggaaacttcccaggtccccaagaagggtgcatcaggcttctg
gtgcgaccatctgctttctttatcattctaattaactgcttggggcacac
ttggtcaattgtgaagttatgcaaatgaccgaggttggtattgttattac
taagagtcacttggttgcaaaactgttttgactattctagtatcaaaacc
tatccagtctgcaaggagaggggagcctctctgctctccgccccatctca
ccccatttgaaaatcttttgggggaggccatcctagcagtcctagtgtgc
agagagggaactcaaattagctaaggcggagatttttccctgtgtcttgt
tttaagccgaaccttccggaaatcacttgcttctaggctgctcagtttgt
ctagcctggaagagggaaagagagcaccaaacctggagctaatataggta
aaaagccctcagtgtcctaagaaaacaaagcctgggaggtaggcgcatca
ccagtaggaatgatggaagggagggaggtagaaaaggaagaggatgggga
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72536124_72537262
seq2: B6Ng01-266D18.b_41_1179 (reverse)

seq1  AACTAGA-TGCGAATCCTGAGGTGACAATGACAA-TGCTTCGCTGGATC-  47
      ||||||| |||| |||   ||||||||||||||| |||||||||| ||| 
seq2  AACTAGATTGCG-ATCTGAAGGTGACAATGACAATTGCTTCGCTGAATCT  49

seq1  TATACGGATGAGTTAGAGTTCAGAGAGGATGATGTGTTCCTGACTGAATT  97
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  TATAC-GATGAGTTAGAGTTCAGAGA-GATGATGTGTTCCTGACTGAATT  97

seq1  GATGAAACTGGCCAATCGCTTTCAGCTCCAGCTCCTTAGGGAGAGGCAAG  147
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  GATGAACCTGGCC-ATCGCTTTCAGCTCCAGCTCCTTAGGGAGAGGCAAG  146

seq1  TCACAGCAGATGTATTCAA-GGCTCTGCAAGGTGGTGGCAAAGCTTACTT  196
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCACAGCAGATGTATTCAAGGGCTCTGCAAGGTGGTGGCAAAGCTTACTT  196

seq1  GTGCCAGGCTCTGGGAAAGCAGCTTCTGCCATGTGATAACTGCTGGGGTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGGCTCTGGGAAAGCAGCTTCTGCCATGTGATAACTGCTGGGGTT  246

seq1  CTTTAATGTGATGTAGGAGAAGCTGGTTTCTCTGTAGCTTTGTGTTTCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGTGATGTAGGAGAAGCTGGTTTCTCTGTAGCTTTGTGTTTCTG  296

seq1  GTAAGCTCCACTTTGCCAGTGCTGTTGGTTTTCTCTGTCTTCGACTGTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTCCACTTTGCCAGTGCTGTTGGTTTTCTCTGTCTTCGACTGTTT  346

seq1  GTTACCTTAGAGTATGTGATGGTGTAAATTAGCCAATAGATATAGACGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTTAGAGTATGTGATGGTGTAAATTAGCCAATAGATATAGACGAA  396

seq1  TAGAATCCAGCCTCCAGATTCTTGACTTTGCCTTTCATTATACTACATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCAGCCTCCAGATTCTTGACTTTGCCTTTCATTATACTACATTT  446

seq1  TGGTCAACACTCCTTTTTGGAAGCACTTTAGTACTTAAATTCAGTACTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAACACTCCTTTTTGGAAGCACTTTAGTACTTAAATTCAGTACTTT  496

seq1  TTGGTTCACTAGGTTTTGTAGCCAGTATCAATAAGGGCTTACTTCATTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCACTAGGTTTTGTAGCCAGTATCAATAAGGGCTTACTTCATTGA  546

seq1  AGCTAGCTGCTTTTTTAGGTCCCAAGGAGCTAGCATGATATGTTTTTATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCTGCTTTTTTAGGTCCCAAGGAGCTAGCATGATATGTTTTTATG  596

seq1  GTGCATTTTCTTTGTTCCTCTCTGAAGTTAGCATTTTAGAACAGTAAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTTCTTTGTTCCTCTCTGAAGTTAGCATTTTAGAACAGTAAGAG  646

seq1  ACAAAATGTTATCAGATGGTGCCAAGCAGAATGCTGTCCGTGTGCTGTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGTTATCAGATGGTGCCAAGCAGAATGCTGTCCGTGTGCTGTGG  696

seq1  CTGTGTCTCTTGGTGACCAGTGAGGTTGATGTAATCGTCTTACAGTACTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTCTTGGTGACCAGTGAGGTTGATGTAATCGTCTTACAGTACTT  746

seq1  CACCATCTCCTTTTCTATTGGGTGTGTGGGGAAAAGGGGCCCCTCTCCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTCCTTTTCTATTGGGTGTGTGGGGAAAAGGGGCCCCTCTCCTG  796

seq1  GGTAGTTTCAACCATGTGTTCCTCATTCAGTCTATTTGTTACTTGTTTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTCAACCATGTGTTCCTCATTCAGTCTATTTGTTACTTGTTTGC  846

seq1  CCTTCCCCAGGAGATCAAAGAGAGACTTGGCTACCAGGAGCTCCTTGCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCAGGAGATCAAAGAGAGACTTGGCTACCAGGAGCTCCTTGCTC  896

seq1  TTTTTTTATTGTGAGGGAGTTTTCCTTTAGGATTGCCCCAGAACCTCACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTGTGAGGGAGTTTTCCTTTAGGATTGCCCCAGAACCTCACA  946

seq1  GAATCCATAGACCAAATCTTTCCAACTACCTATAAGTTATGAGGGCCTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATAGACCAAATCTTTCCAACTACCTATAAGTTATGAGGGCCTGA  996

seq1  GAACTGTTTTAATATCTAATTTAAACATAGACGAGTCCAAGGTATTTAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTTTAATATCTAATTTAAACATAGACGAGTCCAAGGTATTTAGG  1046

seq1  ATTAGATAATTAGCACAACTAACTTTATTATTGAAGTCCTCTAGTTAATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATAATTAGCACAACTAACTTTATTATTGAAGTCCTCTAGTTAATT  1096

seq1  ATTGTTTGTTTATTGAGGTTTTTAATTACATAAATATGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGTTTATTGAGGTTTTTAATTACATAAATATGAATTC  1139

seq1: chr11_72389936_72390687
seq2: B6Ng01-266D18.g_68_819

seq1  GAATTCAGTCCGGCAGTAAGTTGGGGGACTGTAAACTAGTCGTACCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCGGCAGTAAGTTGGGGGACTGTAAACTAGTCGTACCTGCT  50

seq1  GACCCACTAGGGTACATTCCAGGCAGAGGTGGAACCACGCTGTGTGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTAGGGTACATTCCAGGCAGAGGTGGAACCACGCTGTGTGCTCA  100

seq1  GCGTAGATCCGGCGCGCAGCCAGTAGGTCGAGCTCGCCACCTATAGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGATCCGGCGCGCAGCCAGTAGGTCGAGCTCGCCACCTATAGCTTC  150

seq1  CTGGAAGTTGGCCCGGGCAGAGTCTGTCTGATATCCACTCAGGAAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTTGGCCCGGGCAGAGTCTGTCTGATATCCACTCAGGAAAAGAG  200

seq1  AAAGCCCCGGAAACTTCCCAGGTCCCCAAGAAGGGTGCATCAGGCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCGGAAACTTCCCAGGTCCCCAAGAAGGGTGCATCAGGCTTCTG  250

seq1  GTGCGACCATCTGCTTTCTTTATCATTCTAATTAACTGCTTGGGGCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGACCATCTGCTTTCTTTATCATTCTAATTAACTGCTTGGGGCACAC  300

seq1  TTGGTCAATTGTGAAGTTATGCAAATGACCGAGGTTGGTATTGTTATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAATTGTGAAGTTATGCAAATGACCGAGGTTGGTATTGTTATTAC  350

seq1  TAAGAGTCACTTGGTTGCAAAACTGTTTTGACTATTCTAGTATCAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCACTTGGTTGCAAAACTGTTTTGACTATTCTAGTATCAAAACC  400

seq1  TATCCAGTCTGCAAGGAGAGGGGAGCCTCTCTGCTCTCCGCCCCATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTCTGCAAGGAGAGGGGAGCCTCTCTGCTCTCCGCCCCATCTCA  450

seq1  CCCCATTTGAAAATCTTTTGGGGGAGGCCATCCTAGCAGTCCTAGTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTGAAAATCTTTTGGGGGAGGCCATCCTAGCAGTCCTAGTGTGC  500

seq1  AGAGAGGGAACTCAAATTAGCTAAGGCGGAGATTTTTCCCTGTGTCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGAACTCAAATTAGCTAAGGCGGAGATTTTTCCCTGTGTCTTGT  550

seq1  TTTAAGCCGAACCTTCCGGAAATCACTTGCTTCTAGGCTGCTCAGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCGAACCTTCCGGAAATCACTTGCTTCTAGGCTGCTCAGTTTGT  600

seq1  CTAGCCTGGAAGAGGGAAAGAGAGCACCAAACCTGGAGCTAATATAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGGAAGAGGGAAAGAGAGCACCAAACCTGGAGCTAATATAGGTA  650

seq1  AAAAGCCCTCAGTGTCCTAAGAAAACAAAGCCTGGGAGGTAGGCGCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCTCAGTGTCCTAAGAAAACAAAGCCTGGGAGGTAGGCGCATCA  700

seq1  CCAGTAGGAATGATGGAAGGGAGGGAGGTAGAAAAGGAAGAGGATGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGGAATGATGGAAGGGAGGGAGGTAGAAAAGGAAGAGGATGGGGA  750

seq1  GG  752
      ||
seq2  GG  752