BAC Information

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BAC

Clone NameB6Ng01-267F13
Chromosome11 (Build37)
Map Location 99,014,211 - 99,156,982
singlet/doubletdoublet
Overlap geneCcr7, Smarce1, Krt222, Krt24
Upstream genePparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4
Downstream geneLOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267F13.bB6Ng01-267F13.g
ACCGA070493GA070494
length8131,083
definitionB6Ng01-267F13.b B6Ng01-267F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,156,431 - 99,156,982)(99,014,211 - 99,015,271)
sequence
gaattcaggaccctcccctagtactgcaaaggccacagtggtccttgcat
ggggaccatgacaaatggcctgcccaggaaccctagacagtttgtttgtc
ttggtttaaaacagtggctttcagccttcttaatgctgtgaccttgaata
cagtacctcaggttgtagtgacccaagcaccaagcataaaattactttta
ttgttacttcataactgtaattttgctactgttaggaattgcaatgtaaa
gagctgatatgcaggatagctgatattcaaccctgtgaaagagtcgttag
acccccgaagttacgacccacgagttgagaacagctggtttaaagggttt
ttctgaggtaagccaagtctgtatagactccaataaaaacatcttcaagt
gcagagtcacctcatggccaccaggatgcagaagaatccaggaaataggc
gtcaccagagggacaaaagaaggtgccagagacaataatactggcaaaat
atcaaaagtcagggaactcagtgcacatcagaaaagcaataaatgaaatg
aacaataaataactataatgaaacaattaacagtaggttgatttcaaaaa
aaatcaaacagaaaaaagcagggaactgaacaaagcactaggcaaaatga
atgaaaaaagccaatatcctgcactgactgcagaattgattaagtagaag
aatccatgagcttggggggaggggggggcgacgtttgacaatatatggtt
tggaaggaaaaagagaattgaaaaggaatgaaaagctgtgcacagagctt
agcagatgcagtg
gaattctcttctactgccatctacagctgagctgtgagacacaagtctct
tatgggttcatttgtcaccccctccccttctctgattttgagatgttgtg
ctgagatctgtggtcccatgtcttgaagttaggaagggtatatcagggct
gctcattcaaatcatgaaagaggccagctcagccctggtttgtagtttct
cattttgtataacagaaacctaggccttctcacccacctcctgtccctac
taggtagacaaagagtgaaaaacagatagtttgtggcccacccgcccttc
caacggcgccggagcctgttttgagcaaaacttcttaagcagtttcccct
cacaccagcatttcagagttagctattagggtgcttcttaagttgagtaa
aaaagcaagactatctcttcttccaggaccagagtttgccccaccccctg
tatcaaagccatgcatttagcatccccaaacctagttcaggagagactct
atagtgtcccaagtgccaaggaaggcaggtgtctgtctcctttttgtgtc
aaaacatttagacctttaatgggaccgactaaggtcaattgggatggtaa
aatttacaccatggaaattggcaaatgctgtaaatttagaacctttccct
attctgggagccacattttaggaaggtggagaagatctttggtggatggt
gtgggtttctctgagactatggctggtggaggtagatacctgaggtgtag
gcttagaaagcaggcaggtgggaggagaagcttggaatagatatttgctt
tctaaaatatacttagaggaggctgattctatccatccatccatccacac
atcccatccattccatccattccattcattcatttcatccattcattcat
ttcctccatccctctctccctccctccatcaacattttttaacttacacc
caaaacatctgagagggcaaagggtgtaagatcaaactcctggcctccca
tgaggttcataacccggcagaaagggggaccccactatatactttcccac
agcctgggatcctagatctaagggtgtgcaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99156431_99156982
seq2: B6Ng01-267F13.b_46_597 (reverse)

seq1  TTCATTTCATTTATTGCTTTTCTGATGTGCACTGAGTTCCCTGACTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCATTTATTGCTTTTCTGATGTGCACTGAGTTCCCTGACTTTTG  50

seq1  ATATTTTGCCAGTATTATTGTCTCTGGCACCTTCTTTTGTCCCTCTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGCCAGTATTATTGTCTCTGGCACCTTCTTTTGTCCCTCTGGTG  100

seq1  ACGCCTATTTCCTGGATTCTTCTGCATCCTGGTGGCCATGAGGTGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTATTTCCTGGATTCTTCTGCATCCTGGTGGCCATGAGGTGACTCT  150

seq1  GCACTTGAAGATGTTTTTATTGGAGTCTATACAGACTTGGCTTACCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGAAGATGTTTTTATTGGAGTCTATACAGACTTGGCTTACCTCAG  200

seq1  AAAAACCCTTTAAACCAGCTGTTCTCAACTCGTGGGTCGTAACTTCGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCTTTAAACCAGCTGTTCTCAACTCGTGGGTCGTAACTTCGGGG  250

seq1  GTCTAACGACTCTTTCACAGGGTTGAATATCAGCTATCCTGCATATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACGACTCTTTCACAGGGTTGAATATCAGCTATCCTGCATATCAGC  300

seq1  TCTTTACATTGCAATTCCTAACAGTAGCAAAATTACAGTTATGAAGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACATTGCAATTCCTAACAGTAGCAAAATTACAGTTATGAAGTAAC  350

seq1  AATAAAAGTAATTTTATGCTTGGTGCTTGGGTCACTACAACCTGAGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTAATTTTATGCTTGGTGCTTGGGTCACTACAACCTGAGGTAC  400

seq1  TGTATTCAAGGTCACAGCATTAAGAAGGCTGAAAGCCACTGTTTTAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCAAGGTCACAGCATTAAGAAGGCTGAAAGCCACTGTTTTAAACC  450

seq1  AAGACAAACAAACTGTCTAGGGTTCCTGGGCAGGCCATTTGTCATGGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAACAAACTGTCTAGGGTTCCTGGGCAGGCCATTTGTCATGGTCC  500

seq1  CCATGCAAGGACCACTGTGGCCTTTGCAGTACTAGGGGAGGGTCCTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAAGGACCACTGTGGCCTTTGCAGTACTAGGGGAGGGTCCTGAAT  550

seq1  TC  552
      ||
seq2  TC  552

seq1: chr11_99014211_99015271
seq2: B6Ng01-267F13.g_67_1149

seq1  GAATTCTCTTCTACTGCCATCTACAGCTGAGCTGTGAGACACAAGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTACTGCCATCTACAGCTGAGCTGTGAGACACAAGTCTCT  50

seq1  TATGGGTTCATTTGTCACCCCCTCCCCTTCTCTGATTTTGAGATGTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTCATTTGTCACCCCCTCCCCTTCTCTGATTTTGAGATGTTGTG  100

seq1  CTGAGATCTGTGGTCCCATGTCTTGAAGTTAGGAAGGGTATATCAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCTGTGGTCCCATGTCTTGAAGTTAGGAAGGGTATATCAGGGCT  150

seq1  GCTCATTCAAATCATGAAAGAGGCCAGCTCAGCCCTGGTTTGTAGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCAAATCATGAAAGAGGCCAGCTCAGCCCTGGTTTGTAGTTTCT  200

seq1  CATTTTGTATAACAGAAACCTAGGCCTTCTCACCCACCTCCTGTCCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTATAACAGAAACCTAGGCCTTCTCACCCACCTCCTGTCCCTAC  250

seq1  TAGGTAGACAAAGAGTGAAAAACAGATAGTTTGTGGCCCACCCGCCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGACAAAGAGTGAAAAACAGATAGTTTGTGGCCCACCCGCCCTTC  300

seq1  CAACGGCGCCGGAGCCTGTTTTGAGCAAAACTTCTTAAGCAGTTTCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGCGCCGGAGCCTGTTTTGAGCAAAACTTCTTAAGCAGTTTCCCCT  350

seq1  CACACCAGCATTTCAGAGTTAGCTATTAGGGTGCTTCTTAAGTTGAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGCATTTCAGAGTTAGCTATTAGGGTGCTTCTTAAGTTGAGTAA  400

seq1  AAAAGCAAGACTATCTCTTCTTCCAGGACCAGAGTTTGCCCCACCCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAGACTATCTCTTCTTCCAGGACCAGAGTTTGCCCCACCCCCTG  450

seq1  TATCAAAGCCATGCATTTAGCATCCCCAAACCTAGTTCAGGAGAGACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGCCATGCATTTAGCATCCCCAAACCTAGTTCAGGAGAGACTCT  500

seq1  ATAGTGTCCCAAGTGCCAAGGAAGGCAGGTGTCTGTCTCCTTTTTGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTCCCAAGTGCCAAGGAAGGCAGGTGTCTGTCTCCTTTTTGTGTC  550

seq1  AAAACATTTAGACCTTTAATGGGACCGACTAAGGTCAATTGGGATGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTAGACCTTTAATGGGACCGACTAAGGTCAATTGGGATGGTAA  600

seq1  AATTTACACCATGGAAATTGGCAAATGCTGTAAATTTAGAACCTTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACACCATGGAAATTGGCAAATGCTGTAAATTTAGAACCTTTCCCT  650

seq1  ATTCTGGGAGCCACATTTTAGGAAGGTGGAGAAGATCTTTGGTGGATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGAGCCACATTTTAGGAAGGTGGAGAAGATCTTTGGTGGATGGT  700

seq1  GTGGG-TTCTCTGAGACTATGGCTGGTGGAGGTAGATACCTGAGGTGTAG  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTCTCTGAGACTATGGCTGGTGGAGGTAGATACCTGAGGTGTAG  750

seq1  GCTTAGAAAGCAGGCAGGTGGGAGGAGAAGC-TGGAATAGATATTTGCTT  798
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTTAGAAAGCAGGCAGGTGGGAGGAGAAGCTTGGAATAGATATTTGCTT  800

seq1  TCTAAAATATACTTAGA-GAGGCTGATTCTATCCATCCATCCATCCACAC  847
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTAAAATATACTTAGAGGAGGCTGATTCTATCCATCCATCCATCCACAC  850

seq1  AT-CCATCCA-TCCATCCA-TCCATCCATCCA-TCCATCCATCCATCCA-  892
      || ||||||| |||||||| ||||| ||| || | ||||||| ||| || 
seq2  ATCCCATCCATTCCATCCATTCCATTCATTCATTTCATCCATTCATTCAT  900

seq1  TTCCTCCATCCCTCTCTCCCTCCCTCCCATCAACACTTTTT-ACTTACAC  941
      ||||||||||||||||||||||||| ||||||||| ||||| ||||||||
seq2  TTCCTCCATCCCTCTCTCCCTCCCT-CCATCAACATTTTTTAACTTACAC  949

seq1  CCAAAACATCTGAGA-GGCAGA-GGTGTAAGAACAAAATCCT-GCTTCCC  988
      ||||||||||||||| |||| | ||||||||| |||| |||| || ||||
seq2  CCAAAACATCTGAGAGGGCAAAGGGTGTAAGATCAAACTCCTGGCCTCCC  999

seq1  ATGA-GTTCAT-AGCCAGCAG--AGGTGGACCCCACTATATACCTT-CCA  1033
      |||| |||||| | || ||||  ||| |||||||||||||||| || |||
seq2  ATGAGGTTCATAACCCGGCAGAAAGGGGGACCCCACTATATACTTTCCCA  1049

seq1  CAGC--TGGAT-CTAGATCTA---GGGTGCAATG  1061
      ||||   |||| |||||||||   | ||||||||
seq2  CAGCCTGGGATCCTAGATCTAAGGGTGTGCAATG  1083