BAC Information

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BAC

Clone NameB6Ng01-272C09
Chromosome11 (Build37)
Map Location 106,380,713 - 106,381,795
singlet/doubletsinglet
Overlap geneTex2
Upstream geneEG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277
Downstream genePecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272C09.bB6Ng01-272C09.g
ACCGA074047GA074048
length1,085258
definitionB6Ng01-272C09.b B6Ng01-272C09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgtgaccccccagagtagccactgtggccactgccctgcatg
caaaccaccagtcgtccctctcatggtctgagggcggagggccttaccct
ttccatgcctccattgttagtacaaatcacgtgtgggctttactctaatg
ccagcttaaagacgctgaagggtttattttgtgtgcctgtgtgcaccaca
tgcatgcctggtgtcctcagaggtcgaaagagggcgtcagatcccttgaa
actggagttagataatgactgcagtccatcattcgggtgctgggagctga
actctgctgcagagtagcaagtgctcttcaccactgaaatatctttctag
tcctggaagtacccgtttggatactgtaatttagattcatatttcttggg
aggcaaaaagaaaaaacgaaaatcaaaacaaaccctttttttgtttgttt
gttaactgtctctctaggactctggatcgatttggaaatgtcttacaatg
ggtcctttctgatgactctggaaaccaaaatgaacttgaccaaactaggt
aaagagcctcttgttgaagccctgaaggttggagaaattggcaaagaagg
gtaaggggctatatatgaatttactaaccaaccctggaggcctagcctct
ccctgcagcctgtgagaagcaggtcggggcgtgggagtccctgaatggcc
agcaggctcagtgtcagtgctccggatcaccgagggagctgtacacccag
gggccacacagtggctgtttgctttgctggtcttaattattcaacaagca
tcactgtcacagggcaagcagcacagacccctctgagcataaactgttct
tcaacccagtccttactctgaagcctacctcagctcagagccacagatgg
caatgtgtggagctgattaaggtcccctggggatcaccactttaaacacc
aggtcagaattatttataacgagatggttgatctggaagcaccttcccgg
aaataatacaatatgatttgcttagtaattctccctctttgtaagaatag
tacatctgttactcagaggtaatctggatttagaa
cactacagagtaaatcttatcttagtgtttggtttcaggggtggagggtt
agggggactgaggtgtatattgtacatatcaaagcagatctggtcttctg
gtcccccccaccagcagccctcagtccgtacctggcataccctgcccccc
aaccctgaactttccagcccaggggctgaactgtccttcccccagatgtt
cttccctatataacccagatattttggtgtctctcttcttcccctccccc
tcccccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106380713_106381795
seq2: B6Ng01-272C09.b_36_1120 (reverse)

seq1  TTCTAAAT-CAGATTAACTCTGAGTAACAGATGTACTAT--CTACAAAGA  47
      |||||||| ||||||| ||||||||||||||||||||||   ||||||||
seq2  TTCTAAATCCAGATTACCTCTGAGTAACAGATGTACTATTCTTACAAAGA  50

seq1  -GGAGAATTTACTAAGCAAATCAATATTGTATTATTT-CGGGAAGGTGCT  95
       |||||| |||||||||||||| |||||||||||||| ||||||||||||
seq2  GGGAGAA-TTACTAAGCAAATC-ATATTGTATTATTTCCGGGAAGGTGCT  98

seq1  TCCAGATCAACCATCTCGTTATAAATAATTCTGACCTGGTGTTTAAAGTG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATCAACCATCTCGTTATAAATAATTCTGACCTGGTGTTTAAAGTG  148

seq1  GTGGATCCCCAGGGGACCTTAATCAGCTCCACACATTGCCATCTGTGGCT  195
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-GATCCCCAGGGGACCTTAATCAGCTCCACACATTGCCATCTGTGGCT  197

seq1  CTGAGCTGAGGTAGGCTTCAGAGTAAGGACTGGGTTGAAGAACAGTTTAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGAGGTAGGCTTCAGAGTAAGGACTGGGTTGAAGAACAGTTTAT  247

seq1  GCTCAGAGGGGTCTGTGCTGCTTGCCCTGTGACAGTGATGCTTGTTGAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGGGGTCTGTGCTGCTTGCCCTGTGACAGTGATGCTTGTTGAAT  297

seq1  AATTAAGACCAGCAAAGCAAACAGCCACTGTGTGGCCCCTGGGTGTACAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGACCAGCAAAGCAAACAGCCACTGTGTGGCCCCTGGGTGTACAG  347

seq1  CTCCCTCGGTGATCCGGAGCACTGACACTGAGCCTGCTGGCCATTCAGGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCGGTGATCCGGAGCACTGACACTGAGCCTGCTGGCCATTCAGGG  397

seq1  ACTCCCACGCCCCGACCTGCTTCTCACAGGCTGCAGGGAGAGGCTAGGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCACGCCCCGACCTGCTTCTCACAGGCTGCAGGGAGAGGCTAGGCC  447

seq1  TCCAGGGTTGGTTAGTAAATTCATATATAGCCCCTTACCCTTCTTTGCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTTGGTTAGTAAATTCATATATAGCCCCTTACCCTTCTTTGCCA  497

seq1  ATTTCTCCAACCTTCAGGGCTTCAACAAGAGGCTCTTTACCTAGTTTGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCAACCTTCAGGGCTTCAACAAGAGGCTCTTTACCTAGTTTGGT  547

seq1  CAAGTTCATTTTGGTTTCCAGAGTCATCAGAAAGGACCCATTGTAAGACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCATTTTGGTTTCCAGAGTCATCAGAAAGGACCCATTGTAAGACA  597

seq1  TTTCCAAATCGATCCAGAGTCCTAGAGAGACAGTTAACAAACAAACAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAATCGATCCAGAGTCCTAGAGAGACAGTTAACAAACAAACAAAA  647

seq1  AAAGGGTTTGTTTTGATTTTCGTTTTTTCTTTTTGCCTCCCAAGAAATAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTTGTTTTGATTTTCGTTTTTTCTTTTTGCCTCCCAAGAAATAT  697

seq1  GAATCTAAATTACAGTATCCAAACGGGTACTTCCAGGACTAGAAAGATAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAAATTACAGTATCCAAACGGGTACTTCCAGGACTAGAAAGATAT  747

seq1  TTCAGTGGTGAAGAGCACTTGCTACTCTGCAGCAGAGTTCAGCTCCCAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGTGAAGAGCACTTGCTACTCTGCAGCAGAGTTCAGCTCCCAGC  797

seq1  ACCCGAATGATGGACTGCAGTCATTATCTAACTCCAGTTTCAAGGGATCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAATGATGGACTGCAGTCATTATCTAACTCCAGTTTCAAGGGATCT  847

seq1  GACGCCCTCTTTCGACCTCTGAGGACACCAGGCATGCATGTGGTGCACAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCCTCTTTCGACCTCTGAGGACACCAGGCATGCATGTGGTGCACAC  897

seq1  AGGCACACAAAATAAACCCTTCAGCGTCTTTAAGCTGGCATTAGAGTAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACAAAATAAACCCTTCAGCGTCTTTAAGCTGGCATTAGAGTAAA  947

seq1  GCCCACACGTGATTTGTACTAACAATGGAGGCATGGAAAGGGTAAGGCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACGTGATTTGTACTAACAATGGAGGCATGGAAAGGGTAAGGCCC  997

seq1  TCCGCCCTCAGACCATGAGAGGGACGACTGGTGGTTTGCATGCAGGGCAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCCTCAGACCATGAGAGGGACGACTGGTGGTTTGCATGCAGGGCAG  1047

seq1  TGGCCACAGTGGCTACTCTGGGGGGTCACAGTGAATTC  1083
      ||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACAGTGGCTACTCTGGGGGGTCACAGTGAATTC  1085