BAC Information

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BAC

Clone NameB6Ng01-273O16
Chromosome11 (Build37)
Map Location 53,589,682 - 53,746,978
singlet/doubletdoublet
Overlap geneIrf1, LOC622459, Slc22a5, LOC667762
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5
Downstream geneSlc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273O16.bB6Ng01-273O16.g
ACCGA075362GA075363
length1,1351,108
definitionB6Ng01-273O16.b B6Ng01-273O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,745,859 - 53,746,978)(53,589,682 - 53,590,786)
sequence
gaattcaacagctagggaggggtgctccttactggctggtttctgtagct
tcttcaacctgctttattatagaacctgagactaccttcccagaagtggc
cacacccaacatgggatgggtcctgctacatcaatcactaattagagaat
accctacaagcctgcctgcagccccatcctattaaggcaattttctcaat
tgaggccccttcctctcctgcaactctagtttgtgtcaagttgacaaaaa
gccagccagtgcaggagctaagctcagaacctcatgcatgttaagaaagt
tctctccagccaggcagtggtggcgcacacctttaatcccagcacttggg
aggcagaggcagggggatttctgagttcaaggtcagcctggtctacagag
tgagttccaggacagccagggctacacagagaaaccctgtctcggaaaaa
caaaaccaaacaccccccccccaaaaaagaaagaaagaaagaaagaaaga
aagaaaggaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggga
agttctctgcagtcactagtagcacatgcctttgatcccacccaacagta
gggaggtgggtgtatctcggagtttgaggccagcctgatctatagagtga
gttccaagactttcagggctacacagagaaaccttgtctcaagaaaccag
agagagacagagacagagagacagagggaaagtgcttcccatcaagctat
agcctgacccatggtattttagatgcctaagagaaaggacagtggcccga
ggatctcatagccctcctggggctggccgtccacgcaattctcaggagca
aggagcttttgggacaggacgtccctggagagagacaacagggatctgaa
agtcccttgctctggtctatgaaagcagatggttgggtggccctacaaag
gggagaagtgtgacagggagccagagcagtcctttcccttgtcaacagga
gcagtggagtgagggagtggtgtcagcagtcggtccctcgatgagtttta
cggtcttgtttggtgtattgtggtgtgtgcctcacagatgtgtgtaacta
tggacacaggagtatggcatggtactgggccagag
gaattcctagctgcccctgtgctggggctggtctatagaagagatggagt
tgctgtgggctgtggacagctgggtgagagtcacatacccttccttactt
atacagcctttttcttttttggtcatcttctaggggacattgggataggc
atacaacatgtcttcacggagatgaagaatatggactccatcatgtggat
ggacagcctgctgggcaactctgtgaggctgccgccctctattcaggcca
ttccttgtgcaccatagtttgggtctctgacccgttcttgccctcctgag
tgagttaggccttggcatcatggtggctgtgatacaaaaaaagctagact
cctgtgggccccttgacacatggcaaagcatagtcccactgcaaacaggg
gaccatcctccttgggtcagtgggctctcagggcttaggaggcagagtct
gagttttcttgtgaggtgaagctggccctgactcctaggaagatggattg
gggggtctgaggtgtaaggcagaggccatggacaggagtcatcttctagc
tttttaaaagccttgttgcatagagagggtcttatcgctgggctggccct
gaggggaatagaccagcgcccacagaagagcatagcactggccctagagc
tggctctgtactaggagacaattgcactaaatgagtcctattcccaaaga
actgctgcccttcccaaccgagccctgggatggttcccaagccagtgaaa
tgtgaagggaaaaaaaatggggtcctgtgaaggttggctcccttagcctc
agagggaatctgcctcactacctgctccagctgtggggctcagaaaaaaa
aatggcactttctctgtggactttgccacatttctgatcagaggtgtaca
ctaacattttcttccccagtctaggccttgcatttattatatagtgcctt
gcctggtgccctgctgtctcctcagcccttggccagtcctcagcagccca
ggaaagggggggttgtgagcgccttggcgtgactcctgactattctatta
gaaaccgccacttacttgctaaattgggtttggtcatgtggtggaacctt
gtgtaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53745859_53746978
seq2: B6Ng01-273O16.b_49_1183 (reverse)

seq1  CTCTGG-CCTGTA-CATGCCCATACTCCTGTGTTCATAGTTACACACATC  48
      |||||| || ||| |||| |||||||||||||| ||||||||||||||||
seq2  CTCTGGCCCAGTACCATG-CCATACTCCTGTGTCCATAGTTACACACATC  49

seq1  TTGTGA-GCACACA-CACAATACAAACAAAC-AGAACGTAAAACTCATCT  95
       ||||| ||||||| |||||||| | ||||| ||| ||||||||||||| 
seq2  -TGTGAGGCACACACCACAATAC-ACCAAACAAGACCGTAAAACTCATCG  97

seq1  GAGGACCGACTGCCTGACA-CACT-CCTCACT-CACTGCTCCTG-TGACA  141
        |||||||||| |||||| |||| ||||||| ||||||||||| |||||
seq2  AGGGACCGACTG-CTGACACCACTCCCTCACTCCACTGCTCCTGTTGACA  146

seq1  --GGGAAGGACTGCTCTGGCTCCCCTGTCACACTTCT-CCCTTTGTA-GG  187
        || |||||||||||||||| ||||||||||||||| ||||||||| ||
seq2  AGGGAAAGGACTGCTCTGGCT-CCCTGTCACACTTCTCCCCTTTGTAGGG  195

seq1  CCA-CCAACCATCTGCTTTCATAGCCCAGAGCAA-GGAC-TTCAGATCCC  234
      ||| |||||||||||||||||||| ||||||||| |||| ||||||||||
seq2  CCACCCAACCATCTGCTTTCATAGACCAGAGCAAGGGACTTTCAGATCCC  245

seq1  TGTTGTCTCTCTCCA-GGACGTCCTGTCC--AAAGCTCCTTGCTCCTGAG  281
      ||||||||||||||| |||||||||||||  |||||||||||||||||||
seq2  TGTTGTCTCTCTCCAGGGACGTCCTGTCCCAAAAGCTCCTTGCTCCTGAG  295

seq1  AA-TGCGTGGACGGCCAGCCCCAGGAGGGCTATGAGATCCTCGGGCCACT  330
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCGTGGACGGCCAGCCCCAGGAGGGCTATGAGATCCTCGGGCCACT  345

seq1  GTCCTTTCTCTTAGGCATCTAAAATACCATGGGTCAGGCTATAGCTTGAT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCTCTTAGGCATCTAAAATACCATGGGTCAGGCTATAGCTTGAT  395

seq1  GGGAAGCACTTTCCCTCTGTCTCTCTGTCTCTGTCTCTCTCTGGTTTCTT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCACTTTCCCTCTGTCTCTCTGTCTCTGTCTCTCTCTGGTTTCTT  445

seq1  GAGACAAGGTTTCTCTGTGTAGCCCTGAAAGTCTTGGAACTCACTCTATA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGGTTTCTCTGTGTAGCCCTGAAAGTCTTGGAACTCACTCTATA  495

seq1  GATCAGGCTGGCCTCAAACTCCGAGATACACCCACCTCCCTACTGTTGGG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGCTGGCCTCAAACTCCGAGATACACCCACCTCCCTACTGTTGGG  545

seq1  TGGGATCAAAGGCATGTGCTACTAGTGACTGCAGAGAACTTCCCTTCCTT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCAAAGGCATGTGCTACTAGTGACTGCAGAGAACTTCCCTTCCTT  595

seq1  CCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTCCTTTCTTTCTTTCTTTC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTCCTTTCTTTCTTTCTTTC  645

seq1  TTTCTTTCTTTCTTTTTTGGGGGGGGGGTGTTTGGTTTTGTTTTTCCGAG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTTTTGGGGGGGGGGTGTTTGGTTTTGTTTTTCCGAG  695

seq1  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGAC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGAC  745

seq1  CAGGCTGACCTTGAACTCAGAAATCCCCCTGCCTCTGCCTCCCAAGTGCT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGACCTTGAACTCAGAAATCCCCCTGCCTCTGCCTCCCAAGTGCT  795

seq1  GGGATTAAAGGTGTGCGCCACCACTGCCTGGCTGGAGAGAACTTTCTTAA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGTGTGCGCCACCACTGCCTGGCTGGAGAGAACTTTCTTAA  845

seq1  CATGCATGAGGTTCTGAGCTTAGCTCCTGCACTGGCTGGCTTTTTGTCAA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGAGGTTCTGAGCTTAGCTCCTGCACTGGCTGGCTTTTTGTCAA  895

seq1  CTTGACACAAACTAGAGTTGCAGGAGAGGAAGGGGCCTCAATTGAGAAAA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACAAACTAGAGTTGCAGGAGAGGAAGGGGCCTCAATTGAGAAAA  945

seq1  TTGCCTTAATAGGATGGGGCTGCAGGCAGGCTTGTAGGGTATTCTCTAAT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTAATAGGATGGGGCTGCAGGCAGGCTTGTAGGGTATTCTCTAAT  995

seq1  TAGTGATTGATGTAGCAGGACCCATCCCATGTTGGGTGTGGCCACTTCTG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATTGATGTAGCAGGACCCATCCCATGTTGGGTGTGGCCACTTCTG  1045

seq1  GGAAGGTAGTCTCAGGTTCTATAATAAAGCAGGTTGAAGAAGCTACAGAA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAGTCTCAGGTTCTATAATAAAGCAGGTTGAAGAAGCTACAGAA  1095

seq1  ACCAGCCAGTAAGGAGCACCCCTCCCTAGCTGTTGAATTC  1120
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCAGTAAGGAGCACCCCTCCCTAGCTGTTGAATTC  1135

seq1: chr11_53589682_53590786
seq2: B6Ng01-273O16.g_67_1174

seq1  GAATTCCTAGCTGCCCCTGTGCTGGGGCTGGTCTATAGAAGAGATGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCTGCCCCTGTGCTGGGGCTGGTCTATAGAAGAGATGGAGT  50

seq1  TGCTGTGGGCTGTGGACAGCTGGGTGAGAGTCACATACCCTTCCTTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGGCTGTGGACAGCTGGGTGAGAGTCACATACCCTTCCTTACTT  100

seq1  ATACAGCCTTTTTCTTTTTTGGTCATCTTCTAGGGGACATTGGGATAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCCTTTTTCTTTTTTGGTCATCTTCTAGGGGACATTGGGATAGGC  150

seq1  ATACAACATGTCTTCACGGAGATGAAGAATATGGACTCCATCATGTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACATGTCTTCACGGAGATGAAGAATATGGACTCCATCATGTGGAT  200

seq1  GGACAGCCTGCTGGGCAACTCTGTGAGGCTGCCGCCCTCTATTCAGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCTGCTGGGCAACTCTGTGAGGCTGCCGCCCTCTATTCAGGCCA  250

seq1  TTCCTTGTGCACCATAGTTTGGGTCTCTGACCCGTTCTTGCCCTCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTGCACCATAGTTTGGGTCTCTGACCCGTTCTTGCCCTCCTGAG  300

seq1  TGAGTTAGGCCTTGGCATCATGGTGGCTGTGATACAAAAAAAGCTAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGGCCTTGGCATCATGGTGGCTGTGATACAAAAAAAGCTAGACT  350

seq1  CCTGTGGGCCCCTTGACACATGGCAAAGCATAGTCCCACTGCAAACAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGCCCCTTGACACATGGCAAAGCATAGTCCCACTGCAAACAGGG  400

seq1  GACCATCCTCCTTGGGTCAGTGGGCTCTCAGGGCTTAGGAGGCAGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCCTCCTTGGGTCAGTGGGCTCTCAGGGCTTAGGAGGCAGAGTCT  450

seq1  GAGTTTTCTTGTGAGGTGAAGCTGGCCCTGACTCCTAGGAAGATGGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCTTGTGAGGTGAAGCTGGCCCTGACTCCTAGGAAGATGGATTG  500

seq1  GGGGGTCTGAGGTGTAAGGCAGAGGCCATGGACAGGAGTCATCTTCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCTGAGGTGTAAGGCAGAGGCCATGGACAGGAGTCATCTTCTAGC  550

seq1  TTTTTAAAAGCCTTGTTGCATAGAGAGGGTCTTATCGCTGGGCTGGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAGCCTTGTTGCATAGAGAGGGTCTTATCGCTGGGCTGGCCCT  600

seq1  GAGGGGAATAGACCAGCGCCCACAGAAGAGCATAGCACTGGCCCTAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAATAGACCAGCGCCCACAGAAGAGCATAGCACTGGCCCTAGAGC  650

seq1  TGGCTCTGTACTAGGAGACAATTGCACTAAATGAGTCCTATTCCCAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGTACTAGGAGACAATTGCACTAAATGAGTCCTATTCCCAAAGA  700

seq1  ACTGCTGCCCTTCCCAACCGAGCCCTGGGATGGTTCCCAAGCCAGTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCCCTTCCCAACCGAGCCCTGGGATGGTTCCCAAGCCAGTGAAA  750

seq1  TGTGAAGGGAAAAAAAATGGGGTCCTGTGAAGGTTGGCTCCCTTAGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGGAAAAAAAATGGGGTCCTGTGAAGGTTGGCTCCCTTAGCCTC  800

seq1  AGAGGGAATCTGCCTCACTACCTGCTCCAGCTGTGGGGCTCAGGAAAAAA  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAGGGAATCTGCCTCACTACCTGCTCCAGCTGTGGGGCTCA-GAAAAAA  849

seq1  AAATGGCACTTTCTCTGTGGACTTTGCCACATTTCTGATCAGAGGTGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCACTTTCTCTGTGGACTTTGCCACATTTCTGATCAGAGGTGTAC  899

seq1  ACTAACATTT--CTCCCCAGTCTAGGCCTTTGCATTTATTTATATAGTGC  948
      ||||||||||   ||||||||||||||| ||||||||| |||||||||||
seq2  ACTAACATTTTCTTCCCCAGTCTAGGCC-TTGCATTTA-TTATATAGTGC  947

seq1  CTTGCCTGGTG-CCTGCTGTCTCCTCAGGCCTTGG-CAGTCCTCAGCAGG  996
      ||||||||||| |||||||||||||||| |||||| |||||||||||| |
seq2  CTTGCCTGGTGCCCTGCTGTCTCCTCAGCCCTTGGCCAGTCCTCAGCA-G  996

seq1  CCCAGGGAAAAGGGGGGTTGTGAGCGCCTTGGCGTGACTCTTGACTA-TC  1045
      |||| ||||| ||||||||||||||||||||||||||||| |||||| ||
seq2  CCCA-GGAAAGGGGGGGTTGTGAGCGCCTTGGCGTGACTCCTGACTATTC  1045

seq1  TATTAGAAA-CGCCACCTAACTGCTAAATGGTGTTTGGTCATGTGGTGGA  1094
      ||||||||| |||||| ||  |||||||| | ||||||||||||||||||
seq2  TATTAGAAACCGCCACTTACTTGCTAAATTGGGTTTGGTCATGTGGTGGA  1095

seq1  --CCTGTGTAAAT  1105
        | |||||||||
seq2  ACCTTGTGTAAAT  1108