BAC Information

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BAC

Clone NameB6Ng01-274J15
Chromosome11 (Build37)
Map Location 58,915,599 - 59,041,988
singlet/doubletdoublet
Overlap geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1
Upstream geneCnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
Downstream geneWnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274J15.bB6Ng01-274J15.g
ACCGA075860GA075861
length1,173697
definitionB6Ng01-274J15.b B6Ng01-274J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,915,599 - 58,916,785)(59,041,295 - 59,041,988)
sequence
gaattcctggtggaaaggactattccaacaaagttatctcttaaaaccaa
cagaaataaagacagttcaagagaaacaaactaaagtaactcgtgacatc
caagacaacacttacttaaggctctaattggaatcctaaactctgaggag
gaaaaaagtcttaatgacagtagcaagtggattaatacatttcacgagaa
gagtagatgaacaggggagacatggaaaagattcagttgtgaccaatcct
gtatatgagtaaacctcgttaacaaaaacagggaagggggaaagaaaaaa
gagtctggccagatgactcagaggttaagagtaatggctgctcttgcaga
agaccggggttcaatttccagcacccatgtggcagctcacaattatctgt
cactccagttccaggggagctggcgccctcttatggcctctgtgggcact
gcatacatgcaatgtacatacatgcatgcaaacactcatacacataaaat
caaaatcaatctttaaaaaaaatgaatgaatagtaatccaactaaaacaa
ccaaacaggaaaacaatcaataaaattgaaagaatcagaaaacacctctc
tataataattctaagtggaaatgatcttcactctctgacagagtagccta
ttgtattaaaaaaataagatccagggactagaaagatggctcagtggtta
agagcacctgatgctctcacagaggacccaggttcagatcccagcacata
cgtggtggctcacaaccaccagtaactccagtaataagaatcggaagtct
tcctgcctccaatggcacacacatggtacccagacaaacactcaagcaaa
aggctcatacacatgaaataaattaaataaatctaaaactatttttaaat
atgtcactagttgttttaatactgaactctttgtagtttaaaacacacac
acacaaacacacgttactagtaaattcagacttgagaggggatggatcaa
aaacatggaagccaaaaacaagcacgtagctagactcagatctcatgaac
agagttgaagccaaattagttagaaaaagcaaggtcactattgttattat
gaaaagaatcatacatcaaaagagtgatatatgaataatatgtagatagt
ccaaggaactgacttgcccacgt
gaattccgcaggaaggcgcgcgtgcgcacgcgccggcggacacggaactc
catacaccacacccttgctcgttctagtgccgggagccagagtgctagcc
cgggacccgatccggaaacagagcgacctcggctccgccccgtgaaggct
acaaagtgcagacgcgcaagcgccatccgtgtgggggcggggccctctgc
gtgcccgccctcttcccccggcgtgccccgcggcaggcgctgacgtggct
gccgtcagcgccgccatcttgtgggagcgaaaccaacgcctggctgggag
cagccgccgcggaggtgagacgcggggcgcgctgaggccgaaactgggga
ggccgcgggctggtcatcgtgggagtcaagggggcgctcagctgcggctg
ctaaggaccgagtccggtcgggcggcctgaggtctatgctcagtgagctc
ggcggcaggccggacagaggatcgggacgccccggagtcccgcgtcgccc
acggccgcttggccctcccccactccgcggcccttacgcctgcctggccg
cccgccgcgggccgcagcccggaagtccggccaggacgccggctcttctc
caggaagccaggtttcctgctgttcctctctgcgcctctcctaggctcca
cggcccgagagcctggggagcggggagcagggtttcggggtggtcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58915599_58916785
seq2: B6Ng01-274J15.b_43_1215

seq1  GAATTCCTGGTGGAAAGGACTATTCCAACAAAGTTATCTCTTAAAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTGGAAAGGACTATTCCAACAAAGTTATCTCTTAAAACCAA  50

seq1  CAGAAATAAAGACAGTTCAAGAGAAACAAACTAAAGTAACTCGTGACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAAAGACAGTTCAAGAGAAACAAACTAAAGTAACTCGTGACATC  100

seq1  CAAGACAACACTTACTTAAGGCTCTAATTGGAATCCTAAACTCTGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAACACTTACTTAAGGCTCTAATTGGAATCCTAAACTCTGAGGAG  150

seq1  GAAAAAAGTCTTAATGACAGTAGCAAGTGGATTAATACATTTCACGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGTCTTAATGACAGTAGCAAGTGGATTAATACATTTCACGAGAA  200

seq1  GAGTAGATGAACAGGGGAGACATGGAAAAGATTCAGTTGTGACCAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATGAACAGGGGAGACATGGAAAAGATTCAGTTGTGACCAATCCT  250

seq1  GTATATGAGTAAACCTCGTTAACAAAAACAGGGAAGGGGGAAAGAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGAGTAAACCTCGTTAACAAAAACAGGGAAGGGGGAAAGAAAAAA  300

seq1  GAGTCTGGCCAGATGACTCAGAGGTTAAGAGTAATGGCTGCTCTTGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGCCAGATGACTCAGAGGTTAAGAGTAATGGCTGCTCTTGCAGA  350

seq1  AGACCGGGGTTCAATTTCCAGCACCCATGTGGCAGCTCACAATTATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGGGGTTCAATTTCCAGCACCCATGTGGCAGCTCACAATTATCTGT  400

seq1  CACTCCAGTTCCAGGGGAGCTGGCGCCCTCTTATGGCCTCTGTGGGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGTTCCAGGGGAGCTGGCGCCCTCTTATGGCCTCTGTGGGCACT  450

seq1  GCATACATGCAATGTACATACATGCATGCAAACACTCATACACATAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATGCAATGTACATACATGCATGCAAACACTCATACACATAAAAT  500

seq1  CAAAATCAATCTTTAAAAAAAATGAATGAATAGTAATCCAACTAAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAATCTTTAAAAAAAATGAATGAATAGTAATCCAACTAAAACAA  550

seq1  CCAAACAGGAAAACAATCAATAAAATTGAAAGAATCAGAAAACACCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGGAAAACAATCAATAAAATTGAAAGAATCAGAAAACACCTCTC  600

seq1  TATAATAATTCTAAGTGGAAATGATCTTCACTCTCTGACAGAGTAGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATTCTAAGTGGAAATGATCTTCACTCTCTGACAGAGTAGCCTA  650

seq1  TTGTATTAAAAAAATAAGATCCAGGGACTAGAAAGATGGCTCAGTGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAAAAAAATAAGATCCAGGGACTAGAAAGATGGCTCAGTGGTTA  700

seq1  AGAGCACCTGATGCTCTCACAGAGGACCCAGGTTCAGATCCCAGCACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCTGATGCTCTCACAGAGGACCCAGGTTCAGATCCCAGCACATA  750

seq1  CGTGGTGGCTCACAACCACCAGTAACTCCAGTAATAAGAATCGGAAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGGCTCACAACCACCAGTAACTCCAGTAATAAGAATCGGAAGTCT  800

seq1  TCCTGCCTCCAATGGCACACACATGGTACCCAGACAAACACTCAAGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCCAATGGCACACACATGGTACCCAGACAAACACTCAAGCAAA  850

seq1  AGGCTCATACACATGAAATAAATTAAATAAATCTAAAACTATTTTTAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCATACACATGAAATAAATTAAATAAATCTAAAACTATTTTTAAAT  900

seq1  ATGTCACTAGTTGTTTTAATACTGAACTCTTTGTAGTTTAAAACACACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTAGTTGTTTTAATACTGAACTCTTTGTAGTTTAAAACACACAC  950

seq1  ACACAAACACACGTTACTAGTAAATTCAGACTTGAGAGGGGATGGATCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACACACGTTACTAGTAAATTCAGACTTGAGAGGGGATGGATCAA  1000

seq1  AAACATGGAAGCCAAAAACAAGCAGGGTAGCTAGACTCAGATCTCATTGA  1050
      ||||||||||||||||||||||||  |||||||||||||||||||| |||
seq2  AAACATGGAAGCCAAAAACAAGCA-CGTAGCTAGACTCAGATCTCA-TGA  1048

seq1  ACAGAGTTGAAGGCAAAATTAGTTAGAAAAGGCAAAGTTCACTA-TGTAT  1099
      ||||||||||| || ||||||||||||||| || ||| |||||| |||  
seq2  ACAGAGTTGAA-GCCAAATTAGTTAGAAAAAGC-AAGGTCACTATTGTTA  1096

seq1  TAATGAAGGAAGAAATTCATTACATCAAAAAGATGGAATAAT-TATGAAT  1148
      | |||||  |||||  ||| ||||||||||     || | || |||||  
seq2  TTATGAA--AAGAA--TCA-TACATCAAAA-----GAGTGATATATGA--  1134

seq1  ATATTATGTAGATAGTCCCAAAGGACTGACCTG-CCACGT  1187
      ||| |||||||||||| |||| | |||||| || ||||||
seq2  ATAATATGTAGATAGT-CCAAGGAACTGACTTGCCCACGT  1173

seq1: chr11_59041295_59041988
seq2: B6Ng01-274J15.g_68_764 (reverse)

seq1  GTGACC-CCCCG-AACCCTGCTCCCCGCT-CCCAGGCTCTCGGGCCGTGG  47
      |||||| ||||| |||||||||||||||| ||||||||||||||||||||
seq2  GTGACCACCCCGAAACCCTGCTCCCCGCTCCCCAGGCTCTCGGGCCGTGG  50

seq1  AGCCTAGGAGAGGCGCAGAGAGGAACAGCAGGAAACCTGGCTTCCTGGAG  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGAGAGGCGCAGAGAGGAACAGCAGGAAACCTGGCTTCCTGGAG  100

seq1  AAGAGCCGGCGTCCTGGCCGGACTTCCGGGCTGCGGCCCGCGGCGGGCGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCGGCGTCCTGGCCGGACTTCCGGGCTGCGGCCCGCGGCGGGCGG  150

seq1  CCAGGCAGGCGTAAGGGCCGCGGAGTGGGGGAGGGCCAAGCGGCCGTGGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGGCGTAAGGGCCGCGGAGTGGGGGAGGGCCAAGCGGCCGTGGG  200

seq1  CGACGCGGGACTCCGGGGCGTCCCGATCCTCTGTCCGGCCTGCCGCCGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGCGGGACTCCGGGGCGTCCCGATCCTCTGTCCGGCCTGCCGCCGAG  250

seq1  CTCACTGAGCATAGACCTCAGGCCGCCCGACCGGACTCGGTCCTTAGCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAGCATAGACCTCAGGCCGCCCGACCGGACTCGGTCCTTAGCAG  300

seq1  CCGCAGCTGAGCGCCCCCTTGACTCCCACGATGACCAGCCCGCGGCCTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGCTGAGCGCCCCCTTGACTCCCACGATGACCAGCCCGCGGCCTCC  350

seq1  CCAGTTTCGGCCTCAGCGCGCCCCGCGTCTCACCTCCGCGGCGGCTGCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCGGCCTCAGCGCGCCCCGCGTCTCACCTCCGCGGCGGCTGCTC  400

seq1  CCAGCCAGGCGTTGGTTTCGCTCCCACAAGATGGCGGCGCTGACGGCAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGGCGTTGGTTTCGCTCCCACAAGATGGCGGCGCTGACGGCAGC  450

seq1  CACGTCAGCGCCTGCCGCGGGGCACGCCGGGGGAAGAGGGCGGGCACGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCAGCGCCTGCCGCGGGGCACGCCGGGGGAAGAGGGCGGGCACGCA  500

seq1  GAGGGCCCCGCCCCCACACGGATGGCGCTTGCGCGTCTGCACTTTGTAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCCCGCCCCCACACGGATGGCGCTTGCGCGTCTGCACTTTGTAGC  550

seq1  CTTCACGGGGCGGAGCCGAGGTCGCTCTGTTTCCGGATCGGGTCCCGGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACGGGGCGGAGCCGAGGTCGCTCTGTTTCCGGATCGGGTCCCGGGC  600

seq1  TAGCACTCTGGCTCCCGGCACTAGAACGAGCAAGGGTGTGGTGTATGGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTCTGGCTCCCGGCACTAGAACGAGCAAGGGTGTGGTGTATGGAG  650

seq1  TTCCGTGTCCGCCGGCGCGTGCGCACGCGCGCCTTCCTGCGGAATTC  694
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGTCCGCCGGCGCGTGCGCACGCGCGCCTTCCTGCGGAATTC  697