BAC Information

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BAC

Clone NameB6Ng01-275B16
Chromosome11 (Build37)
Map Location 78,404,634 - 78,530,541
singlet/doubletdoublet
Overlap geneNlk, LOC100042674
Upstream geneTaok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, LOC100043570
Downstream gene1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275B16.bB6Ng01-275B16.g
ACCGA076231GA076232
length7421,103
definitionB6Ng01-275B16.b B6Ng01-275B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,404,634 - 78,405,374)(78,529,453 - 78,530,541)
sequence
gaattccattgactacaggattaaacagtgcctaaatttaaaaggatgta
caagtttaagaactgaagtaagcaaccaaatgatctccttacaattatta
cacaagagaaaattaaaagtaaatacttttaaacaataatcaggccaagg
caaagtgtaaagatctgttagtctcaaggttttggctaataatgggaatg
ccctttaaattttaaaagtggtccattttaaaccaccagcaaaaaagttc
acaatccatccatcaacggcagctgtgttactttattaagcatggtactg
cccaaagcacatgcaatgggtaattcaaatccaagactccccccatcaga
gcaatgtaaccttccatttggttaattctgcatgtttatgaaaacctggt
actttgttcaaatgacaaaaagctggagactggatagccatgggaaggtg
gaattcagaatttttacaagacacttaaatgttacagaaattaagaaatc
cccccctttttgctatatttatattagaataatagacatgctttgtcctg
gttggggttaaaaactcattaaaagtttgcacgacgtcatgatttaactg
gaatgtttctttaggtaatcttcaattcacagcttttaaagtgatcagga
aaagacaggacagaagcagggtagaatctgtgctaacctgtagtacatgg
ttgaaaactgctgctttcagatgtgtgtggggggtggggtgg
gaattccaggttcagtataaaagaacttgcatcaaaatgtaaggtagagc
ctggcgtggtggcacacgcctttaatcccagcactcgggaggcagaggca
ggcagatttctgagtttgaggccagcctggtctacaaagtgagttccagg
acagccagggatatacagagaaaccctgtcgcaaaaaaccaaaaaaaaaa
aaaaaaaaaaaaaaaaaagtaaggtagatagagacagaagaagaccaagg
tcaacctctggtctccatatacataagcacacacatgtgcataaacacat
atacatgcaaataatacatacatgcataatacagaatgtaggaacatttt
acaccccaaagatagaacaaatacaatcacagaggaaaagacaaaacttt
tacatttagcttgatctagctttatgaaattacatatcattttgatattt
cttgttctatagaaatctgagtgtgatactctatcaggcatttgctctgg
ggctggcatttggaatcactgctctgggagttagaacatcatttttacat
gatatcctcagctgctacccttgactctggctgtgttaggatctggaaaa
tctagtcgtagaagacaggcagatagactaacagtagagaatcttcgcta
catcagcaagtgccaagacttgtgaatcattcttcctggatatacaattg
aaaactgtgaatgtgatgtcattaggtatctttggagcaggacttctatt
gttgtaatggttgggacaaaaacactaatcccaataagtccttggcctta
tgaataattatgaagtttacagtcagcagaggcaagcatctgattggatg
ctgtgttgttactgaaacccaggcagactcagacatccatagatgagatt
tctcattttttgtattatgacccaaaaccctttttaaagaaacttcccaa
ttggtgaactgtaaggcaggttatgatgtcactattaaagtagcagttat
ttttttgagccttctttattcatgtttgaagacacaagcagcaagtgaat
attcttgaacaataaaaacaagtttgactttaggctggcatgtggcgcat
gcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78404634_78405374
seq2: B6Ng01-275B16.b_43_784

seq1  GAATTCCATTGACTACAGGATTAAACAGTGCCTAAATTTAAAAGGATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGACTACAGGATTAAACAGTGCCTAAATTTAAAAGGATGTA  50

seq1  CAAGTTTAAGAACTGAAGTAAGCAACCAAATGATCTCCTTACAATTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTAAGAACTGAAGTAAGCAACCAAATGATCTCCTTACAATTATTA  100

seq1  CACAAGAGAAAATTAAAAGTAAATACTTTTAAACAATAATCAGGCCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGAAAATTAAAAGTAAATACTTTTAAACAATAATCAGGCCAAGG  150

seq1  CAAAGTGTAAAGATCTGTTAGTCTCAAGGTTTTGGCTAATAATGGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTAAAGATCTGTTAGTCTCAAGGTTTTGGCTAATAATGGGAATG  200

seq1  CCCTTTAAATTTTAAAAGTGGTCCATTTTAAACCACCAGCAAAAAAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAAATTTTAAAAGTGGTCCATTTTAAACCACCAGCAAAAAAGTTC  250

seq1  ACAATCCATCCATCAACGGCAGCTGTGTTACTTTATTAAGCATGGTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCATCCATCAACGGCAGCTGTGTTACTTTATTAAGCATGGTACTG  300

seq1  CCCAAAGCACATGCAATGGGTAATTCAAATCCAAGACTCCCCCCATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCACATGCAATGGGTAATTCAAATCCAAGACTCCCCCCATCAGA  350

seq1  GCAATGTAACCTTCCATTTGGTTAATTCTGCATGTTTATGAAAACCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTAACCTTCCATTTGGTTAATTCTGCATGTTTATGAAAACCTGGT  400

seq1  ACTTTGTTCAAATGACAAAAAGCTGGAGACTGGATAGCCATGGGAAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTCAAATGACAAAAAGCTGGAGACTGGATAGCCATGGGAAGGTG  450

seq1  GAATTCAGAATTTTTACAAGACACTTAAATGTTACAGAAATTAAGAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATTTTTACAAGACACTTAAATGTTACAGAAATTAAGAAATC  500

seq1  CCCCCCTTTTTGCTATATTTATATTAGAATAATAGACATGCTTTGTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTTTTTGCTATATTTATATTAGAATAATAGACATGCTTTGTCCTG  550

seq1  GTTGGGGTTAAAAACTCATTAAAAGTTTGCACGACGTCATGATTTAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGTTAAAAACTCATTAAAAGTTTGCACGACGTCATGATTTAACTG  600

seq1  GAATGTTTCTTTAGGTAATCTTCAATTCACAGCTTTTAAAGTGATCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTCTTTAGGTAATCTTCAATTCACAGCTTTTAAAGTGATCAGGA  650

seq1  AAAGACAGGACAGAAGCAGGGTAGAATCTGTGCTAACCTGTAGTACATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGGACAGAAGCAGGGTAGAATCTGTGCTAACCTGTAGTACATGG  700

seq1  TTGAAAACTGCTGCTTTCAGATGTGTGT-GGGGGTGGGGTGG  741
      |||||||||||||||||||||||||||| |||||||||||||
seq2  TTGAAAACTGCTGCTTTCAGATGTGTGTGGGGGGTGGGGTGG  742

seq1: chr11_78529453_78530541
seq2: B6Ng01-275B16.g_72_1174 (reverse)

seq1  GGCATGCGCCACCATGCCCGGCTAAGGTC-AACT--GTTTTATTGTTC-A  46
      ||||||||||| |||||| | |||| ||| ||||   ||||||||||| |
seq2  GGCATGCGCCA-CATGCCAGCCTAAAGTCAAACTTGTTTTTATTGTTCAA  49

seq1  GGATATTCACTTGCTTGCTTGTGTC-TCAAACATG-ATAA--GAGGCTCA  92
      | |||||||||||| |||||||||| ||||||||| ||||   |||||||
seq2  GAATATTCACTTGC-TGCTTGTGTCTTCAAACATGAATAAAGAAGGCTCA  98

seq1  AAAAA--TACTGCTACTTT-ATAGTGACATTCAT-ACCTGCCTTACAGTT  138
      |||||   ||||||||||| ||||||||| |||| |||||||||||||||
seq2  AAAAAATAACTGCTACTTTAATAGTGACA-TCATAACCTGCCTTACAGTT  147

seq1  CA-CAATTGGGAAGTTTCTTTAAAAAGGGTTTTGGGTCAT-ATACAAAAA  186
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACCAATTGGGAAGTTTCTTTAAAAAGGGTTTTGGGTCATAATACAAAAA  197

seq1  ATGAG-AATCTCATCTATGGATGTCTGAGTCTGCCTGGGTTTCAGTAACA  235
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATCTCATCTATGGATGTCTGAGTCTGCCTGGGTTTCAGTAACA  247

seq1  ACACAGCATCCAATCAGATGCTTGCCTCTGCTGACTGTAAACTTCATAAT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCATCCAATCAGATGCTTGCCTCTGCTGACTGTAAACTTCATAAT  297

seq1  TATTCATAAGGCCAAGGACTTATTGGGATTAGTG-TTTTGTCCCAACCAT  334
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATTCATAAGGCCAAGGACTTATTGGGATTAGTGTTTTTGTCCCAACCAT  347

seq1  TACAACAATAGAAGTCCTGCTCCAAAGATACCTAATGACATCACATTCAC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAATAGAAGTCCTGCTCCAAAGATACCTAATGACATCACATTCAC  397

seq1  AGTTTTCAATTGTATATCCAGGAAGAATGATTCACAAGTCTTGGCACTTG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAATTGTATATCCAGGAAGAATGATTCACAAGTCTTGGCACTTG  447

seq1  CTGATGTAGCGAAGATTCTCTACTGTTAGTCTATCTGCCTGTCTTCTACG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTAGCGAAGATTCTCTACTGTTAGTCTATCTGCCTGTCTTCTACG  497

seq1  ACTAGATTTTCCAGATCCTAACACAGCCAGAGTCAAGGGTAGCAGCTGAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTTTCCAGATCCTAACACAGCCAGAGTCAAGGGTAGCAGCTGAG  547

seq1  GATATCATGTAAAAATGATGTTCTAACTCCCAGAGCAGTGATTCCAAATG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATGTAAAAATGATGTTCTAACTCCCAGAGCAGTGATTCCAAATG  597

seq1  CCAGCCCCAGAGCAAATGCCTGATAGAGTATCACACTCAGATTTCTATAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCAGAGCAAATGCCTGATAGAGTATCACACTCAGATTTCTATAG  647

seq1  AACAAGAAATATCAAAATGATATGTAATTTCATAAAGCTAGATCAAGCTA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAATATCAAAATGATATGTAATTTCATAAAGCTAGATCAAGCTA  697

seq1  AATGTAAAAGTTTTGTCTTTTCCTCTGTGATTGTATTTGTTCTATCTTTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAAGTTTTGTCTTTTCCTCTGTGATTGTATTTGTTCTATCTTTG  747

seq1  GGGTGTAAAATGTTCCTACATTCTGTATTATGCATGTATGTATTATTTGC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAAAATGTTCCTACATTCTGTATTATGCATGTATGTATTATTTGC  797

seq1  ATGTATATGTGTTTATGCACATGTGTGTGCTTATGTATATGGAGACCAGA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGTGTTTATGCACATGTGTGTGCTTATGTATATGGAGACCAGA  847

seq1  GGTTGACCTTGGTCTTCTTCTGTCTCTATCTACCTTACTTTTTTTTTTTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACCTTGGTCTTCTTCTGTCTCTATCTACCTTACTTTTTTTTTTTT  897

seq1  TTTTTTTTTTTTTTTTGGTTTTTTGCGACAGGGTTTCTCTGTATATCCCT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTGGTTTTTTGCGACAGGGTTTCTCTGTATATCCCT  947

seq1  GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAA  997

seq1  TCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCA  1047

seq1  CGCCAGGCTCTACCTTACATTTTGATGCAAGTTCTTTT-TACTGAACCTG  1083
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CGCCAGGCTCTACCTTACATTTTGATGCAAGTTCTTTTATACTGAACCTG  1097

seq1  GAATTC  1089
      ||||||
seq2  GAATTC  1103