BAC Information

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BAC

Clone NameB6Ng01-275D23
Chromosome11 (Build37)
Map Location 67,759,048 - 67,908,457
singlet/doubletdoublet
Overlap geneWdr16, Stx8
Upstream gene9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43
Downstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275D23.bB6Ng01-275D23.g
ACCGA076340GA076341
length1,1231,070
definitionB6Ng01-275D23.b B6Ng01-275D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,907,330 - 67,908,457)(67,759,048 - 67,760,112)
sequence
gaattcttacattattcagtataattttgatttaaaaagaaaatccagtt
tggggctggagggatgactcagcagttaagagcactggctgctattcctg
aggtcctgagttcaaatcccagcacatggtggctcacaaccatctataat
gtgatctgatgctctttcctggcatgcaggtgtagatgcatagagaacac
tcatatacataaaataaatgaataaaccttaaacaaaaaaacagaaagaa
gagaaaagaaaagaaaaaaaaaagaaaagaaaaggaaaggaaaagaagag
aaaatccagtttcttaaattggcaggaaactttctaagtatattttaaaa
gtccatttctgaaatccagactcttagaggcaaaaataataagcattaga
gggaagaatattgactggggccaagaaactgtactgttatgctactagca
ctaaaaacactaaaagttatagcaaagtctgggtctggagactctataac
acagtcagattttttttttttttttttttttggtttttcgagacagggtt
tctctgtataaccctggctgtcctggaactcactttgtagacaaggctgg
cctcgaactcagaaatctgcctgtctctgcctcccaagtgctgggattaa
agacgtgcgccaccaccgcccagcacagtcagatttttgaataccttaga
gcaactttgactatattgatttttcttatggatacccaaagactttggtt
aactctcttgatccaaactctacataaagcaatcagtatctcataataat
actcgtggcgtttttatacatcatgaatctgttacataaaaacaatcagt
atttcatgataatactcatggtgttttatacatcatgaatctgtgttttc
tgatcaaatgtgttatcaaggtgccctatagagaagttagccggctagga
ataaataccaaacaatggtatcttggtatgagaagaatcattataaaaat
acttcctgatgtggcctactttgctttctgaatatcaaataaaaatgaga
tgtgattttgccaccagaaaccaatgatcatatttctcacaatgttacgt
ttcattctgcatgttattgacat
gaattccataacctctgacaaagaagctcatggtaacatcggtctcccaa
gacgtaaggacaggtcagcacagctctgagtgcagcagagtcagggccac
ccgcagctggagggtgaattttacttgacattcattcgggtctgatgcta
acacacacatgaccagtgccagctgctgagtcacctccaaagggctctta
ggataaggatgtgcttcctctatggggacacacatttgctttattccagt
ctccaaaggctacgctcataaaagggactatgcattaaaggaggaagaat
agatcaaggaatggagcagagagttctatgaatgaattatgattctgtat
ataatcacatcaataacgtctctttgtggaagagtctgcatttcaacagt
gcatttccccatcagacactttatttcctaagaaaggaataaccatggtg
gcagacggagctgcaacatatcttcagtgtcacctggccacactgcttcc
ctccaggtcaggctttggatgtttggtaatgagtggcgaaggtgccagtg
aaatgggacctcttagcgcttgctgtgctccttcccagctgtgtgctccc
tctgagctatacctcctcaccagcatcccaccaccggtctatccctcctc
tctagcctggcccagtgcacacacacccctgctcaggctgctgctgctgc
tgcaggcacttgcactaggagtcaatgtagcaaccgttgaggcggtactt
actccagtactcaagactattcttttcatctgtcctgtttggcactcggt
tggccagatttttctatttggaagatccagttcccacactcgaattgtcc
cactacaaagaaaaaaatcacaatcaaatggatacccttttaagcactgc
ttcacatcttttagggtattttccacccaccccacccacctcaccccctc
tttgaaggagagctgaacaggaagagggagaaaatattttcttgaggatt
tttacttttcgagcctcactgtacaactttgagatttcccactcaggctc
agagcaacacttaagaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_67907330_67908457
seq2: B6Ng01-275D23.b_45_1167 (reverse)

seq1  ATGTCAATAACATGCAGAATTAAAAGGTACATTTGTGAG-AATATGGATT  49
      |||||||||||||||||||| ||| |  ||| ||||||| ||||||   |
seq2  ATGTCAATAACATGCAGAATGAAACGTAACA-TTGTGAGAAATATG--AT  47

seq1  CCATGGGTTCTGGTGGGCAAAATCACATCTCATTTTTTATTTGATATTCA  99
      |  ||| ||||||| ||||||||||||||||| |||||||||||||||||
seq2  CATTGGTTTCTGGT-GGCAAAATCACATCTCA-TTTTTATTTGATATTCA  95

seq1  GAAAGCAAAGTAGGGCCACATCAGGAAGTA-TTTTATAATGA-TCTTCTC  147
      |||||||||||| ||||||||||||||||| ||||||||||| |||||||
seq2  GAAAGCAAAGTA-GGCCACATCAGGAAGTATTTTTATAATGATTCTTCTC  144

seq1  ATTACCAAGATACCATTGTTTGGTATTTTATTCCTAGCCCGGCTAACTTC  197
      | ||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  A-TACCAAGATACCATTGTTTGGTA-TTTATTCCTAG-CCGGCTAACTTC  191

seq1  TCTATAGGGCACCTTGATAACACATTTGATCAGAAAACACAGATTCATGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGGCACCTTGATAACACATTTGATCAGAAAACACAGATTCATGA  241

seq1  TGTATAAAACACCATGAGTATTATCATGAAATACTGATTG-TTTTATGTA  296
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTATAAAACACCATGAGTATTATCATGAAATACTGATTGTTTTTATGTA  291

seq1  ACAGATTCATGATGTATAAAAACGCCACGAGTATTATTATGAGATACTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTCATGATGTATAAAAACGCCACGAGTATTATTATGAGATACTGA  341

seq1  TTGCTTTATGTAGAGTTTGGATCAAGAGAGTTAACCAAAGTCTTTGGGTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATGTAGAGTTTGGATCAAGAGAGTTAACCAAAGTCTTTGGGTA  391

seq1  TCCATAAGAAAAATCAATATAGTCAAAGTTGCTCTAAGGTATTCAAAAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGAAAAATCAATATAGTCAAAGTTGCTCTAAGGTATTCAAAAAT  441

seq1  CTGACTGTGCTGGGCGGTGGTGGCGCACGTCTTTAATCCCAGCACTTGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTGCTGGGCGGTGGTGGCGCACGTCTTTAATCCCAGCACTTGGG  491

seq1  AGGCAGAGACAGGCAGATTTCTGAGTTCGAGGCCAGCCTTGTCTACAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGACAGGCAGATTTCTGAGTTCGAGGCCAGCCTTGTCTACAAAG  541

seq1  TGAGTTCCAGGACAGCCAGGGTTATACAGAGAAACCCTGTCTCGAAAAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGACAGCCAGGGTTATACAGAGAAACCCTGTCTCGAAAAAC  591

seq1  CAAAAAAAAAAAAAAAAAAAAAATCTGACTGTGTTATAGAGTCTCCAGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAAAAAATCTGACTGTGTTATAGAGTCTCCAGAC  641

seq1  CCAGACTTTGCTATAACTTTTAGTGTTTTTAGTGCTAGTAGCATAACAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTTTGCTATAACTTTTAGTGTTTTTAGTGCTAGTAGCATAACAGT  691

seq1  ACAGTTTCTTGGCCCCAGTCAATATTCTTCCCTCTAATGCTTATTATTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCTTGGCCCCAGTCAATATTCTTCCCTCTAATGCTTATTATTTT  741

seq1  TGCCTCTAAGAGTCTGGATTTCAGAAATGGACTTTTAAAATATACTTAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTAAGAGTCTGGATTTCAGAAATGGACTTTTAAAATATACTTAGA  791

seq1  AAGTTTCCTGCCAATTTAAGAAACTGGATTTTCTCTTCTTTTCCTTTCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCTGCCAATTTAAGAAACTGGATTTTCTCTTCTTTTCCTTTCCT  841

seq1  TTTCTTTTCTTTTTTTTTTCTTTTCTTTTCTCTTCTTTCTGTTTTTTTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTTTTTTTTTCTTTTCTTTTCTCTTCTTTCTGTTTTTTTGT  891

seq1  TTAAGGTTTATTCATTTATTTTATGTATATGAGTGTTCTCTATGCATCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTTTATTCATTTATTTTATGTATATGAGTGTTCTCTATGCATCTA  941

seq1  CACCTGCATGCCAGGAAAGAGCATCAGATCACATTATAGATGGTTGTGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCATGCCAGGAAAGAGCATCAGATCACATTATAGATGGTTGTGAG  991

seq1  CCACCATGTGCTGGGATTTGAACTCAGGACCTCAGGAATAGCAGCCAGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGCTGGGATTTGAACTCAGGACCTCAGGAATAGCAGCCAGTG  1041

seq1  CTCTTAACTGCTGAGTCATCCCTCCAGCCCCAAACTGGATTTTCTTTTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACTGCTGAGTCATCCCTCCAGCCCCAAACTGGATTTTCTTTTTA  1091

seq1  AATCAAAATTATACTGAATAATGTAAGAATTC  1128
      ||||||||||||||||||||||||||||||||
seq2  AATCAAAATTATACTGAATAATGTAAGAATTC  1123

seq1: chr11_67759048_67760112
seq2: B6Ng01-275D23.g_64_1133

seq1  GAATTCCATAACCTCTGACAAAGAAGCTCATGGTAACATCGGTCTCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAACCTCTGACAAAGAAGCTCATGGTAACATCGGTCTCCCAA  50

seq1  GACGTAAGGACAGGTCAGCACAGCTCTGAGTGCAGCAGAGTCAGGGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAAGGACAGGTCAGCACAGCTCTGAGTGCAGCAGAGTCAGGGCCAC  100

seq1  CCGCAGCTGGAGGGTGAATTTTACTTGACATTCATTCGGGTCTGATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGCTGGAGGGTGAATTTTACTTGACATTCATTCGGGTCTGATGCTA  150

seq1  ACACACACATGACCAGTGCCAGCTGCTGAGTCACCTCCAAAGGGCTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATGACCAGTGCCAGCTGCTGAGTCACCTCCAAAGGGCTCTTA  200

seq1  GGATAAGGATGTGCTTCCTCTATGGGGACACACATTTGCTTTATTCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGGATGTGCTTCCTCTATGGGGACACACATTTGCTTTATTCCAGT  250

seq1  CTCCAAAGGCTACGCTCATAAAAGGGACTATGCATTAAAGGAGGAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGGCTACGCTCATAAAAGGGACTATGCATTAAAGGAGGAAGAAT  300

seq1  AGATCAAGGAATGGAGCAGAGAGTTCTATGAATGAATTATGATTCTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGGAATGGAGCAGAGAGTTCTATGAATGAATTATGATTCTGTAT  350

seq1  ATAATCACATCAATAACGTCTCTTTGTGGAAGAGTCTGCATTTCAACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACATCAATAACGTCTCTTTGTGGAAGAGTCTGCATTTCAACAGT  400

seq1  GCATTTCCCCATCAGACACTTTATTTCCTAAGAAAGGAATAACCATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCCCATCAGACACTTTATTTCCTAAGAAAGGAATAACCATGGTG  450

seq1  GCAGACGGAGCTGCAACATATCTTCAGTGTCACCTGGCCACACTGCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACGGAGCTGCAACATATCTTCAGTGTCACCTGGCCACACTGCTTCC  500

seq1  CTCCAGGTCAGGCTTTGGATGTTTGGTAATGAGTGGCGAAGGTGCCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTCAGGCTTTGGATGTTTGGTAATGAGTGGCGAAGGTGCCAGTG  550

seq1  AAATGGGACCTCTTAGCGCTTGCTGTGCTCCTTCCCAGCTGTGTGCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGACCTCTTAGCGCTTGCTGTGCTCCTTCCCAGCTGTGTGCTCCC  600

seq1  TCTGAGCTATACCTCCTCACCAGCATCCCACCACCGGTCTATCCCTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTATACCTCCTCACCAGCATCCCACCACCGGTCTATCCCTCCTC  650

seq1  TCTAGCCTGGCCCAGTGCACACACACCCCTGCTCAGGCTGCTGCTGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTGGCCCAGTGCACACACACCCCTGCTCAGGCTGCTGCTGCTGC  700

seq1  TGCAGGCACTTGCACTAGGAGTCAATGTAGCAACCGTTGAGGCGGTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCACTTGCACTAGGAGTCAATGTAGCAACCGTTGAGGCGGTACTT  750

seq1  ACTCCAGTACTCAAGACTATTCTTTTCATCTGTCCTGTTTGGCACTCGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTACTCAAGACTATTCTTTTCATCTGTCCTGTTTGGCACTCGGT  800

seq1  TGGCCAGATTTTTCTATTTGGAAGATCCAGTTCCCACACTCGAATTGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGATTTTTCTATTTGGAAGATCCAGTTCCCACACTCGAATTGTCC  850

seq1  CACTACAAAGAAAAAAATCACAATCAAATGGATACCCTTTTAAGCACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAAAGAAAAAAATCACAATCAAATGGATACCCTTTTAAGCACTGC  900

seq1  TTCACATCTTTTAGGGTATTTCCACCCCACCCCACCCCACCTCACCCCCT  950
      ||||||||||||||||||||| |  ||||||||| |||||||||||||||
seq2  TTCACATCTTTTAGGGTATTTTCCACCCACCCCA-CCCACCTCACCCCCT  949

seq1  C-TTGAAGGAGAAGCTG-ACAGGAAGAGGGAG-AAATATTT--CTGAGGA  995
      | ||||||||| ||||| |||||||||||||| ||||||||   ||||||
seq2  CTTTGAAGGAG-AGCTGAACAGGAAGAGGGAGAAAATATTTTCTTGAGGA  998

seq1  TTTTTACTTTTCGAGCC-CACTGTACAAC-TTGAGAATTTCCCACTCAGC  1043
      ||||||||||||||||| ||||||||||| ||||| ||||||||||||| 
seq2  TTTTTACTTTTCGAGCCTCACTGTACAACTTTGAG-ATTTCCCACTCAGG  1047

seq1  CTCAGAGCAACAC-TAAGAGGTA  1065
      ||||||||||||| |||||||||
seq2  CTCAGAGCAACACTTAAGAGGTA  1070