BAC Information

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BAC

Clone NameB6Ng01-276B08
Chromosome11 (Build37)
Map Location 39,342,448 - 39,454,020
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276B08.bB6Ng01-276B08.g
ACCGA076950GA076951
length1,0611,135
definitionB6Ng01-276B08.b B6Ng01-276B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,342,448 - 39,343,492)(39,452,918 - 39,454,020)
sequence
gaattcagagagactggggcagcatgcaaacaacctctgtgtgtatgatc
tagctcctcggtgtatgtattatggcttttagttcagtgtctttgtgggg
ttcctgagtgtgtgaatgagtgagtctctggtttttatgtcttcttttgg
gctctttttcttctgttagcttgtcttgcccatcactgatatgatagttt
ttgtcttactttattatttattttgttatgctttattattgttgttcatt
agacacctgttctttgttaatgagagacagaaaatgagtagattccccag
agaatggaggtaggaaggaacagggggtagatggaagagaaaccatcatc
aggttgtactatgtaagaaaggaatgtattgtctacaaaaagaaattaaa
aatttcaacaacagaagctgctattttaacttagtcttcaacattcttta
agaagaaaactaggcactattttatgttcatctattacaaattgcaggtt
acttagcaatgatcattcatgatgtattacaatattttaatattcaaaac
attttaacaacttgctaatcctgagctgttttgcttcactgtatgtataa
tcatttcatagcaaaggtctcctcacatcagtaaagacttgtttacagac
tgtctgtcttccagactatgcctatcatcaaaactcccctcttatcttac
taaagatggttcactctatatattagaatcattgggtctgtataagtagt
gaaaagaaaagcctggaaatatacaaatttcatgtgtaatcaattattca
gcagtctatcttctcttgcaacttctagaaaatccagatcaaatggcaca
caatttgtacatttgtattagcaggaaagtgcacccttattgaggagcac
aggaagctaaagactatcagaggtgtgcatttcgtaacaggtaacccata
ctagattacatttcccagggtacaatagtatattgaaaatcagtcagtat
ggacattttacctttattacatcctatactgcccatcaaaatttgccagt
attctggtttc
gaattcctccctggcttccaacacattgaaaaaatgttctgattttctgg
acatcatagactttataggttttaaaaatattgccattatattatgttgc
tttaatgataaagaaattgcttatgcagttttcctcacctaaaaagcaag
tttagttcccaaggacaaaatgacccatggacttaagaaggtacagcaca
cacacacacacacacacacacacacacacacacacacacacacacacact
aaataagaccttaagaggcccagactaaaagattgttggcaataaaacta
taaaatagaagaggctggggaccctgtagaagaaacagatcacaggagcg
tgtaatcacttctctcatgaggcatctgctaatctaaggaaaccaagctt
gcagctcagcagttctgatgggaagacagagggaaaacagtagatgcctg
ccttctggggctgaggttcccaagggaaaccaaacctgtgttaacaggca
ccataagagccgatgatcctgagcatgcctcctgaagtgattcatgagtt
ggtggtaagggaatttgttgtctacagtggtgaaaataaaaaaaaataaa
ataaaataaaaagcaagtcaattagctgggtttgctggagttttatctat
gacacgattcttcagagttgagtcaggagaatccaatggattatcagcct
cagctgcacagcaagaatgagaccagtgtgggttacatgtgacccactta
ttggaagagagacacagagacagaatcagaaagaagagacaatcccaaag
agagagtggggagagagacagaaagacagagagagggacagagacagaca
caaagaaagagagacagagagagaaagacagagaagagaggagagagaga
cagagagtggggacagagaatgggaagggaagaaagggaaggaaaggaga
aataagagttctgaagaaacatctaacaccttgtaagtttagaaaattgt
ctcttaatgctgaaccaaggtttgggggctcttgtaagaatgttaacaac
agaaacaattgaaagggccatgatcgccagaattttagttatgtaaaaag
aacagtcctggaagaagaaggattgggccacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39342448_39343492
seq2: B6Ng01-276B08.b_47_1107

seq1  GAATTCAGAGAGACTGGGGCAGCATGCAAACAACCTCTGTGTGTATGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGACTGGGGCAGCATGCAAACAACCTCTGTGTGTATGATC  50

seq1  TAGCTCCTCGGTGTATGTATTATGGCTTTTAGTTCAGTGTCTTTGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTCGGTGTATGTATTATGGCTTTTAGTTCAGTGTCTTTGTGGGG  100

seq1  TTCCTGAGTGTGTGAATGAGTGAGTCTCTGGTTTTTATGTCTTCTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGTGTGTGAATGAGTGAGTCTCTGGTTTTTATGTCTTCTTTTGG  150

seq1  GCTCTTTTTCTTCTGTTAGCTTGTCTTGCCCATCACTGATATGATAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTTCTTCTGTTAGCTTGTCTTGCCCATCACTGATATGATAGTTT  200

seq1  TTGTCTTACTTTATTATTTATTTTGTTATGCTTTATTATTGTTGTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTACTTTATTATTTATTTTGTTATGCTTTATTATTGTTGTTCATT  250

seq1  AGACACCTGTTCTTTGTTAATGAGAGACAGAAAATGAGTAGATTCCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTGTTCTTTGTTAATGAGAGACAGAAAATGAGTAGATTCCCCAG  300

seq1  AGAATGGAGGTAGGAAGGAACAGGGGGTAGATGGAAGAGAAACCATCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAGGTAGGAAGGAACAGGGGGTAGATGGAAGAGAAACCATCATC  350

seq1  AGGTTGTACTATGTAAGAAAGGAATGTATTGTCTACAAAAAGAAATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTACTATGTAAGAAAGGAATGTATTGTCTACAAAAAGAAATTAAA  400

seq1  AATTTCAACAACAGAAGCTGCTATTTTAACTTAGTCTTCAACATTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAACAACAGAAGCTGCTATTTTAACTTAGTCTTCAACATTCTTTA  450

seq1  AGAAGAAAACTAGGCACTATTTTATGTTCATCTATTACAAATTGCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAACTAGGCACTATTTTATGTTCATCTATTACAAATTGCAGGTT  500

seq1  ACTTAGCAATGATCATTCATGATGTATTACAATATTTTAATATTCAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAATGATCATTCATGATGTATTACAATATTTTAATATTCAAAAC  550

seq1  ATTTTAACAACTTGCTAATCCTGAGCTGTTTTGCTTCACTGTATGTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACAACTTGCTAATCCTGAGCTGTTTTGCTTCACTGTATGTATAA  600

seq1  TCATTTCATAGCAAAGGTCTCCTCACATCAGTAAAGACTTGTTTACAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATAGCAAAGGTCTCCTCACATCAGTAAAGACTTGTTTACAGAC  650

seq1  TGTCTGTCTTCCAGACTATGCCTATCATCAAAACTCCCCTCTTATCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTTCCAGACTATGCCTATCATCAAAACTCCCCTCTTATCTTAC  700

seq1  TAAAGATGGTTCACTCTATATATTAGAATCATTGGGTCTGTATAAGTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGGTTCACTCTATATATTAGAATCATTGGGTCTGTATAAGTAGT  750

seq1  GAAAAGAAAAGCCTGGAAATATACAAATTTCATGTGTAATCAATTATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGCCTGGAAATATACAAATTTCATGTGTAATCAATTATTCA  800

seq1  GCAGTCTATCTTCTCTTGCAACTTCTAGAAAATCCAGATCAAATGGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTATCTTCTCTTGCAACTTCTAGAAAATCCAGATCAAATGGCACA  850

seq1  CAA-TTGTACA-TTGTATTAGCAGGAAAGTGCACCCTTA-TGAGGAGCAC  897
      ||| ||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  CAATTTGTACATTTGTATTAGCAGGAAAGTGCACCCTTATTGAGGAGCAC  900

seq1  AGGAAGCTAAAGACTATCAGAGGTGTGCATTTCGTAACAGGTAACCCATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTAAAGACTATCAGAGGTGTGCATTTCGTAACAGGTAACCCATA  950

seq1  CTAGATTACATTTCC--AGGTACAATAGTATATTG-AAATCAG-CAGTAT  993
      |||||||||||||||   ||||||||||||||||| ||||||| ||||||
seq2  CTAGATTACATTTCCCAGGGTACAATAGTATATTGAAAATCAGTCAGTAT  1000

seq1  -GACA-TTTAC--TTATTACAT-CTATACTG-CCATC-AAATTTG-CAGT  1035
       |||| |||||  ||||||||| |||||||| ||||| ||||||| ||||
seq2  GGACATTTTACCTTTATTACATCCTATACTGCCCATCAAAATTTGCCAGT  1050

seq1  A-TCTGGTTTC  1045
      | |||||||||
seq2  ATTCTGGTTTC  1061

seq1: chr11_39452918_39454020
seq2: B6Ng01-276B08.g_64_1198 (reverse)

seq1  TTCTGTG--CCCATCCTTTCTCTTCCA-GACTGT--CTTTTACAT-ACTA  44
      |||||||  || ||||||  ||||||| ||||||   |||||||| ||||
seq2  TTCTGTGGCCCAATCCTTCTTCTTCCAGGACTGTTCTTTTTACATAACTA  50

seq1  AA--TCTGGCGATCATG--CCTTTCAAT--GTTCTGTTGT--ACA-TCTT  85
      ||  |||||||||||||  |||||||||   |||||||||  ||| ||||
seq2  AAATTCTGGCGATCATGGCCCTTTCAATTGTTTCTGTTGTTAACATTCTT  100

seq1  ACAAGAGCCCC--AAACTTGG-TCAGCA-TAAGAGACAAATTTCT-AACT  130
      |||||||||||  || ||||| |||||| |||||||||| ||||| ||||
seq2  ACAAGAGCCCCCAAACCTTGGTTCAGCATTAAGAGACAATTTTCTAAACT  150

seq1  TACAAGGTG-TAGATGTT--CTCAGAACTCTTATTTCTCC-TTCCTT-CC  175
      ||||||||| ||||||||   ||||||||||||||||||| |||||| ||
seq2  TACAAGGTGTTAGATGTTTCTTCAGAACTCTTATTTCTCCTTTCCTTCCC  200

seq1  TTTCTTCCC-TCCCATTCTCTGTCCCCACTCTCTGTCTCTCTCTCCTCTC  224
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCTTCCCATTCTCTGTCCCCACTCTCTGTCTCTCTCTCCTCTC  250

seq1  TTCTCTGTCTTTCTCTCTCTGTCTCTCTTTCTTTGTGTCTGTCTCTGTCC  274
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTCTTTCTCTCTCTGTCTCTCTTTCTTTGTGTCTGTCTCTGTCC  300

seq1  CTCTCTCTGTCTTTCTGTCTCTCTCCCCACTCTCTCTTTGGGATTGTCTC  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTCTTTCTGTCTCTCTCCCCACTCTCTCTTTGGGATTGTCTC  350

seq1  TTCTTTCTGATTCTGTCTCTGTGTCTCTCTTCCAATAAGTGGGTCACATG  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGATTCTGTCTCTGTGTCTCTCTTCCAATAAGTGGGTCACATG  400

seq1  TAACCCACACTGGTCTCATTCTTGCTGTGCAGCTGAGGCTGATAATCCAT  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACACTGGTCTCATTCTTGCTGTGCAGCTGAGGCTGATAATCCAT  450

seq1  TGGATTCTCCTGACTCAACTCTGAAGAATCGTGTCATAGATAAAACTCCA  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTCCTGACTCAACTCTGAAGAATCGTGTCATAGATAAAACTCCA  500

seq1  GCAAACCCAGCTAATTGACTTGCTTTTTATTTTATTTTATTTTTTTTTAT  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCAGCTAATTGACTTGCTTTTTATTTTATTTTATTTTTTTTTAT  550

seq1  TTTCACCACTGTAGACAACAAATTCCCTTACCACCAACTCATGAATCACT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCACTGTAGACAACAAATTCCCTTACCACCAACTCATGAATCACT  600

seq1  TCAGGAGGCATGCTCAGGATCATCGGCTCTTATGGTGCCTGTTAACACAG  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGCATGCTCAGGATCATCGGCTCTTATGGTGCCTGTTAACACAG  650

seq1  GTTTGGTTTCCCTTGGGAACCTCAGCCCCAGAAGGCAGGCATCTACTGTT  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTTCCCTTGGGAACCTCAGCCCCAGAAGGCAGGCATCTACTGTT  700

seq1  TTCCCTCTGTCTTCCCATCAGAACTGCTGAGCTGCAAGCTTGGTTTCCTT  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTGTCTTCCCATCAGAACTGCTGAGCTGCAAGCTTGGTTTCCTT  750

seq1  AGATTAGCAGATGCCTCATGAGAGAAGTGATTACACGCTCCTGTGATCTG  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGCAGATGCCTCATGAGAGAAGTGATTACACGCTCCTGTGATCTG  800

seq1  TTTCTTCTACAGGGTCCCCAGCCTCTTCTATTTTATAGTTTTATTGCCAA  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTACAGGGTCCCCAGCCTCTTCTATTTTATAGTTTTATTGCCAA  850

seq1  CAATCTTTTAGTCTGGGCCTCTTAAGGTCTTATTTA------GTGTGTGT  868
      ||||||||||||||||||||||||||||||||||||      ||||||||
seq2  CAATCTTTTAGTCTGGGCCTCTTAAGGTCTTATTTAGTGTGTGTGTGTGT  900

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTACCTTCT  918
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTACCTTCT  950

seq1  TAAGTCCATGGGTCATTTTGTCCTTGGGAACTAAACTTGCTTTTTAGGTG  968
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCATGGGTCATTTTGTCCTTGGGAACTAAACTTGCTTTTTAGGTG  1000

seq1  AGGAAAACTGCATAAGCAATTTCTTTATCATTAAAGCAACATAATATAAT  1018
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACTGCATAAGCAATTTCTTTATCATTAAAGCAACATAATATAAT  1050

seq1  GGCAATATTTTTAAAACCTATAAAGTCTATGATGTCCAGAAAATCAGAAC  1068
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATATTTTTAAAACCTATAAAGTCTATGATGTCCAGAAAATCAGAAC  1100

seq1  ATTTTTTCAATGTGTTGGAAGCCAGGGAGGAATTC  1103
      |||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAATGTGTTGGAAGCCAGGGAGGAATTC  1135