BAC Information

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BAC

Clone NameB6Ng01-276P16
Chromosome11 (Build37)
Map Location 62,045,776 - 62,206,361
singlet/doubletdoublet
Overlap geneAdora2b, 2410012H22Rik, Ttc19, Ncor1
Upstream geneAldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
Downstream genePigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276P16.bB6Ng01-276P16.g
ACCGA077619GA077620
length1,0951,074
definitionB6Ng01-276P16.b B6Ng01-276P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,205,252 - 62,206,361)(62,045,776 - 62,046,851)
sequence
gaattctctgtaattcatgtaattcagtgtaaatatcttagaaataatta
taaaagacatgctatgatgtatgacattgtcattaagttgcagatttttt
tacctgttaaagtctatatctccttaaaattttagtttgaatattatccc
aactaaactgcatttattttttgcagaataatgagaagcaaatgcgtcag
ctttctgtgattccacctatgatgtttgatgcagaacaaagaagggtcaa
attcatcaatatgaatgggctgatggaggatccaatgaaggtttataaag
acagacagtttatgaatgtttggactgaccatgaaaaggagatctttaag
gacaagtaattttaactgttaaattattgttttatagaagttattaaaag
tgtttggcttttacttgagagtgaactctttccacaaagctttcattcca
gtttggccttggagtaaatgctgtgagtaatagataaacttatcttcctt
taagcttggaggtaggataatggttaacagaaatgggcatctggaatcat
tttaggaaagattccttaacttgggtgcagtacaggttaattttgggagg
ctcgttataggacagatttctgtgccttacaataaccatggattcaggta
ggtagtttcctttaaacatttagcaataaaagaatgtggtggtgtgtgca
tttaattccagcccttcagagacagaggcaggcagttctatgattttgag
gccagtctacacagtgagctctaggacagtcagggttacatagtaagacc
ctgtttcaaaaaacaaaccaaaccaaaaaaaaaacaaaatttaaaaacta
tcctttaaaaactcggccatttaaaaattctttctatcagaggctggaga
gatggctcacagttaagagcactgactgctcttccagaggtcctgagttc
aatttcccagcaaccacatggtggctcccagccatctgtatgagatctga
tggcctcttctggtgttctgaagacagttatatacatagtaatattcttt
aaataattctttttttttccatgtgagagtttattgcaggagaga
gaattctcgggatacgaaaccagacagaagatccgtatctggtgacggag
tcctcactggtttaaagtgtcagctgtgagaggacatagggtaagagtgc
aaatcttgtccccacatcagaactagataacactatcgaatctgctcagt
catttgccagcacatttagatagtagtgagacaaggaggtctaaaagtta
ctcttaaacaatgtaagaaatatataaccccccctccaaaaaaatcatag
aacagcccaaaactgcaacaccgacaagccagaaagaaacagaaaaaaca
aaaactaaaacaaaaacaaaaacaaacaaacaaacaaaaaacctctcccc
atctagctgactcattgcctgacccaacttgacacagactagtggacccg
aggaaagggagcctcagctgaggaattctctccaccagattggcctgtga
gcatgtctgtgggaccttctcttgattaataaggaatgtggggtggcaca
gctcactgcgggtggtgccactccagggcaggtgggcctaggctgtacag
gaaagcaggctaagaaagccatggggagcaagccaggaagcagttccttc
ccttcagttcctgcctccaggttcccactccaggctcctgcccactttcc
tcctgacagactgtggtgtccaggtataagcggtaaatcctctcctcctt
caccttggttttgatgaatgttttattccagcacagaaagccaagtagag
cctcccctccccccagcatcttgtgatccatttgtactcgagtctgactt
ctgctggctcctggcctcactccaaatggccactcttggggcaggacaag
tgggtcataaatttactacttcaggatagaatgagctgccctcttgaact
ttctttcaagtaaggacccaggaaggaccgagcagaaaggccaggtgacc
agatgactgcccgttactgctacaaaaagaccccattgtttcagggggag
attcaaaactcagccaccatatatatgcccacagttgattttttaagttt
ttcgagattgtgttctctgtgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62205252_62206361
seq2: B6Ng01-276P16.b_46_1140 (reverse)

seq1  TCTCTCCCTTCCAATAAAACCTCTTCCACATGGAAAAAAAAAAGAATTTT  50
      |||||||  | |||||||  ||||  ||||||| ||||||||||||||  
seq2  TCTCTCC--TGCAATAAA--CTCT--CACATGG-AAAAAAAAAGAATT--  41

seq1  ATTTTAAAGAATTATTTACTTATGTATATAAACTGTCTTCAGAACACCAG  100
        ||||||||||   |||| ||||||||| ||||||||||||||||||||
seq2  -ATTTAAAGAAT--ATTAC-TATGTATAT-AACTGTCTTCAGAACACCAG  86

seq1  AAGAGGCCATCAGATCTCATTACAGATGGCTGGGAGCCACCATGTGGTTG  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGAGGCCATCAGATCTCA-TACAGATGGCTGGGAGCCACCATGTGGTTG  135

seq1  CTGGG-AATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACT  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACT  185

seq1  GTTGAGCCATCTCTCCAGCCTCTGATAGAAAGAATTTTTAAATGGCCGAG  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TGAGCCATCTCTCCAGCCTCTGATAGAAAGAATTTTTAAATGGCCGAG  234

seq1  TTTTTAAAGGATAGTTTTTAAATTTTGTTTTTTTTTTGGTTTGGTTTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGATAGTTTTTAAATTTTGTTTTTTTTTTGGTTTGGTTTGTT  284

seq1  TTTTGAAACAGGGTCTTACTATGTAACCCTGACTGTCCTAGAGCTCACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACAGGGTCTTACTATGTAACCCTGACTGTCCTAGAGCTCACTG  334

seq1  TGTAGACTGGCCTCAAAATCATAGAACTGCCTGCCTCTGTCTCTGAAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTGGCCTCAAAATCATAGAACTGCCTGCCTCTGTCTCTGAAGGG  384

seq1  CTGGAATTAAATGCACACACCACCACATTCTTTTATTGCTAAATGTTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTAAATGCACACACCACCACATTCTTTTATTGCTAAATGTTTAA  434

seq1  AGGAAACTACCTACCTGAATCCATGGTTATTGTAAGGCACAGAAATCTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTACCTACCTGAATCCATGGTTATTGTAAGGCACAGAAATCTGT  484

seq1  CCTATAACGAGCCTCCCAAAATTAACCTGTACTGCACCCAAGTTAAGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAACGAGCCTCCCAAAATTAACCTGTACTGCACCCAAGTTAAGGAA  534

seq1  TCTTTCCTAAAATGATTCCAGATGCCCATTTCTGTTAACCATTATCCTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTAAAATGATTCCAGATGCCCATTTCTGTTAACCATTATCCTAC  584

seq1  CTCCAAGCTTAAAGGAAGATAAGTTTATCTATTACTCACAGCATTTACTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCTTAAAGGAAGATAAGTTTATCTATTACTCACAGCATTTACTC  634

seq1  CAAGGCCAAACTGGAATGAAAGCTTTGTGGAAAGAGTTCACTCTCAAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAAACTGGAATGAAAGCTTTGTGGAAAGAGTTCACTCTCAAGTA  684

seq1  AAAGCCAAACACTTTTAATAACTTCTATAAAACAATAATTTAACAGTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAACACTTTTAATAACTTCTATAAAACAATAATTTAACAGTTAA  734

seq1  AATTACTTGTCCTTAAAGATCTCCTTTTCATGGTCAGTCCAAACATTCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTGTCCTTAAAGATCTCCTTTTCATGGTCAGTCCAAACATTCAT  784

seq1  AAACTGTCTGTCTTTATAAACCTTCATTGGATCCTCCATCAGCCCATTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTCTGTCTTTATAAACCTTCATTGGATCCTCCATCAGCCCATTCA  834

seq1  TATTGATGAATTTGACCCTTCTTTGTTCTGCATCAAACATCATAGGTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGAATTTGACCCTTCTTTGTTCTGCATCAAACATCATAGGTGGA  884

seq1  ATCACAGAAAGCTGACGCATTTGCTTCTCATTATTCTGCAAAAAATAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAAAGCTGACGCATTTGCTTCTCATTATTCTGCAAAAAATAAAT  934

seq1  GCAGTTTAGTTGGGATAATATTCAAACTAAAATTTTAAGGAGATATAGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTAGTTGGGATAATATTCAAACTAAAATTTTAAGGAGATATAGAC  984

seq1  TTTAACAGGTAAAAAAATCTGCAACTTAATGACAATGTCATACATCATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGGTAAAAAAATCTGCAACTTAATGACAATGTCATACATCATAG  1034

seq1  CATGTCTTTTATAATTATTTCTAAGATATTTACACTGAATTACATGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTTTATAATTATTTCTAAGATATTTACACTGAATTACATGAATT  1084

seq1  ACAGAGAATTC  1110
      |||||||||||
seq2  ACAGAGAATTC  1095

seq1: chr11_62045776_62046851
seq2: B6Ng01-276P16.g_68_1141

seq1  GAATTCTCGGGATACGAAACCAGACAGAAGATCCGTATCTGGTGACGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGGGATACGAAACCAGACAGAAGATCCGTATCTGGTGACGGAG  50

seq1  TCCTCACTGGTTTAAAGTGTCAGCTGTGAGAGGACATAGGGTAAGAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTGGTTTAAAGTGTCAGCTGTGAGAGGACATAGGGTAAGAGTGC  100

seq1  AAATCTTGTCCCCACATCAGAACTAGATAACACTATCGAATCTGCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGTCCCCACATCAGAACTAGATAACACTATCGAATCTGCTCAGT  150

seq1  CATTTGCCAGCACATTTAGATAGTAGTGAGACAAGGAGGTCTAAAAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCAGCACATTTAGATAGTAGTGAGACAAGGAGGTCTAAAAGTTA  200

seq1  CTCTTAAACAATGTAAGAAATATATAACCCCCCCTCCAAAAAAATCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAACAATGTAAGAAATATATAACCCCCCCTCCAAAAAAATCATAG  250

seq1  AACAGCCCAAAACTGCAACACCGACAAGCCAGAAAGAAACAGAAAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCAAAACTGCAACACCGACAAGCCAGAAAGAAACAGAAAAAACA  300

seq1  AAAACTAAAACAAAAACAAAAACAAACAAACAAACAAAAAACCTCTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAACAAAAACAAAAACAAACAAACAAACAAAAAACCTCTCCCC  350

seq1  ATCTAGCTGACTCATTGCCTGACCCAACTTGACACAGACTAGTGGACCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCTGACTCATTGCCTGACCCAACTTGACACAGACTAGTGGACCCG  400

seq1  AGGAAAGGGAGCCTCAGCTGAGGAATTCTCTCCACCAGATTGGCCTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGAGCCTCAGCTGAGGAATTCTCTCCACCAGATTGGCCTGTGA  450

seq1  GCATGTCTGTGGGACCTTCTCTTGATTAATAAGGAATGTGGGGTGGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTGTGGGACCTTCTCTTGATTAATAAGGAATGTGGGGTGGCACA  500

seq1  GCTCACTGCGGGTGGTGCCACTCCAGGGCAGGTGGGCCTAGGCTGTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGCGGGTGGTGCCACTCCAGGGCAGGTGGGCCTAGGCTGTACAG  550

seq1  GAAAGCAGGCTAAGAAAGCCATGGGGAGCAAGCCAGGAAGCAGTTCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGGCTAAGAAAGCCATGGGGAGCAAGCCAGGAAGCAGTTCCTTC  600

seq1  CCTTCAGTTCCTGCCTCCAGGTTCCCACTCCAGGCTCCTGCCCACTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTTCCTGCCTCCAGGTTCCCACTCCAGGCTCCTGCCCACTTTCC  650

seq1  TCCTGACAGACTGTGGTGTCCAGGTATAAGCGGTAAATCCTCTCCTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACAGACTGTGGTGTCCAGGTATAAGCGGTAAATCCTCTCCTCCTT  700

seq1  CACCTTGGTTTTGATGAATGTTTTATTCCAGCACAGAAAGCCAAGTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGGTTTTGATGAATGTTTTATTCCAGCACAGAAAGCCAAGTAGAG  750

seq1  CCTCCCCTCCCCCCAGCATCTTGTGATCCATTTGTACTCGAGTCTGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCCCCCCAGCATCTTGTGATCCATTTGTACTCGAGTCTGACTT  800

seq1  CTGCTGGCTCCTGGCCTCACTCCAAATGGCCACTCTT-GGGCAGGACAAG  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGCTGGCTCCTGGCCTCACTCCAAATGGCCACTCTTGGGGCAGGACAAG  850

seq1  TGGGTCATAAAATTTACTACTTCAGGATAGAATGAGCTGCCCTCTTGAAC  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAT-AAATTTACTACTTCAGGATAGAATGAGCTGCCCTCTTGAAC  899

seq1  TTTC-TTCAAGT-AGGACCCAGGAAGGACCGAGCAAGAAAGGCCAGGTGA  947
      |||| ||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TTTCTTTCAAGTAAGGACCCAGGAAGGACCGAGC-AGAAAGGCCAGGTGA  948

seq1  CCAGATGACTG-CCGTTACTGCTACAAAAAGACCCCATTGTTTCAAGGGG  996
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  CCAGATGACTGCCCGTTACTGCTACAAAAAGACCCCATTGTTTC-AGGGG  997

seq1  GAGATTCAAAAACTCAGCCACCATATATATGCCCACAGTTGAATTTTTTA  1046
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGATTC-AAAACTCAGCCACCATATATATGCCCACAGTTG-ATTTTTTA  1045

seq1  AGTTTTTCGAGATGGTGGTTCTCTGTGTAG  1076
      ||||||||||||| || |||||||||||||
seq2  AGTTTTTCGAGATTGT-GTTCTCTGTGTAG  1074