BAC Information

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BAC

Clone NameB6Ng01-279A24
Chromosome11 (Build37)
Map Location 3,695,056 - 3,826,428
singlet/doubletdoublet
Overlap geneOsbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900
Downstream geneLOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279A24.bB6Ng01-279A24.g
ACCGA079141GA079142
length835861
definitionB6Ng01-279A24.b B6Ng01-279A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,695,056 - 3,695,840)(3,825,510 - 3,826,428)
sequence
gaattcactctgtagaccaggctggcctcgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcatgaaccaccacgcccagctc
ggtaattaaattgaatctatagcttgcctttgataaatagccatttgtgc
agcattaagcctgcccactcatcgacatggaatagtcttccatgttctag
tgtcttctttaatttcttcaatgttttaaagttttcactgaagtggtctt
tcaccccaactctcacaccttgtttaagttcattactggtattttttaaa
aagccatcgtcaatgagatctttcccttcaattctttctcagtaaattca
ctttaaaaaaagttatttttttttatgtgtgcatcttgtcttcatatgtc
tgtgtaccacatgcattcagtatccacagatgccagaaaagggtgttgga
gcatctgaaactgatttacagatgattgtaaactgccatgtgggtgctgg
gaattgaacccgggtcctatggaagaatagccagcactcttaactgtaac
tgtaattttttcaaaacctatttttttttctgagatgcacaggacacagt
cttttgtgtatcaccatgggtctggaacatgggatcccaccaagcttggc
ttcagacggtcctgaccctcttcctcccttctctggggccatcaggtgtc
tccatctccttcagatgcagccgtgtgcctctacagaaggttaggttaca
gggagggggctctgagagccctttttcctcacacaaatcaactgcctgag
tttgggtttgggggctgccaggccctggggatgtg
gaattcagggaagggagagaaaataaaggagagagttcatgggcaaacgg
gggtcaaactgtatgatgtggatgtaggcacctttgtgttttacccttga
cttacctcacctttcttcttttgaagaatctgtggcatgcacctcatacc
agcacagctgactgctaattccactttgtgaccttagtgtgggccaagcc
tggcttctcaggggagcaccttcttacaaaggttctcttgtcttgcctcg
tcttaggtccacctccagcgatgataacagtagttgccagcccaaacttt
ccgggggcagcctggcgctctacctgcttgctctcagggccaactgcgaa
ttcttcgggagccgaaagggtgacaggttgatctcacagctcaagtggtt
cttggaggatgagaagaaggccattggtaaggagaaccacatctgagggg
gcaggaacatccgggagggctcattaaatggtttcggcgtttgtagtttt
gaggcaggctccggactcataattgttcttgtgagatgaggttcttggtg
ggaatcagaactcgggggtttcttcccagacctcttctaactccctcact
gggtctacctagaagctcgggctggactcagtcgccaggcttgacccaag
ctttcccctaccccatgcacaagctgttgggtgcccagccagcaagacta
agcggtttccacctctgggacactggtacggcctcctctctgcctactcc
ttagcctctgtcaactttccagcctcctgacttggacccaattcccaaca
gctgaagcagggattttcagtataaacctgttcttcattcagcttacacc
ttgcaggcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3695056_3695840
seq2: B6Ng01-279A24.b_98_882

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGAACCACCACGCCCAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGAACCACCACGCCCAGCTC  50

seq1  GGTAATTAAATTGAATCTATAGCTTGCCTTTGATAAATAGCCATTTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTAAATTGAATCTATAGCTTGCCTTTGATAAATAGCCATTTGTGC  100

seq1  AGCATTAAGCCTGCCCACTCATCGACATGGAATAGTCTTCCATGTTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAGCCTGCCCACTCATCGACATGGAATAGTCTTCCATGTTCTAG  150

seq1  TGTCTTCTTTAATTTCTTCAATGTTTTAAAGTTTTCACTGAAGTGGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTTAATTTCTTCAATGTTTTAAAGTTTTCACTGAAGTGGTCTT  200

seq1  TCACCCCAACTCTCACACCTTGTTTAAGTTCATTACTGGTATTTTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCAACTCTCACACCTTGTTTAAGTTCATTACTGGTATTTTTTAAA  250

seq1  AAGCCATCGTCAATGAGATCTTTCCCTTCAATTCTTTCTCAGTAAATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCGTCAATGAGATCTTTCCCTTCAATTCTTTCTCAGTAAATTCA  300

seq1  CTTTAAAAAAAGTTATTTTTTTTTATGTGTGCATCTTGTCTTCATATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAAAGTTATTTTTTTTTATGTGTGCATCTTGTCTTCATATGTC  350

seq1  TGTGTACCACATGCATTCAGTATCCACAGATGCCAGAAAAGGGTGTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACCACATGCATTCAGTATCCACAGATGCCAGAAAAGGGTGTTGGA  400

seq1  GCATCTGAAACTGATTTACAGATGATTGTAAACTGCCATGTGGGTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAAACTGATTTACAGATGATTGTAAACTGCCATGTGGGTGCTGG  450

seq1  GAATTGAACCCGGGTCCTATGGAAGAATAGCCAGCACTCTTAACTGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACCCGGGTCCTATGGAAGAATAGCCAGCACTCTTAACTGTAAC  500

seq1  TGTAATTTTTTCAAAACCTATTTTTTTTTCTGAGATGCACAGGACACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTTTTCAAAACCTATTTTTTTTTCTGAGATGCACAGGACACAGT  550

seq1  CTTTTGTGTATCACCATGGGTCTGGAACATGGGATCCCACCAAGCTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGTATCACCATGGGTCTGGAACATGGGATCCCACCAAGCTTGGC  600

seq1  TTCAGACGGTCCTGACCCTCTTCCTCCCTTCTCTGGGGCCATCAGGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACGGTCCTGACCCTCTTCCTCCCTTCTCTGGGGCCATCAGGTGTC  650

seq1  TCCATCTCCTTCAGATGCAGCCGTGTGCCTCTACAGAAGGTTAGGTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCCTTCAGATGCAGCCGTGTGCCTCTACAGAAGGTTAGGTTACA  700

seq1  GGGAGGGGGCTCTGAGAGCCCTTTTTCCTCACACAAATCAACTGCCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGCTCTGAGAGCCCTTTTTCCTCACACAAATCAACTGCCTGAG  750

seq1  TTTGGGTTTGGGGGCTGCCAGGCCCTGGGGATGTG  785
      |||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTGGGGGCTGCCAGGCCCTGGGGATGTG  785

seq1: chr11_3825510_3826428
seq2: B6Ng01-279A24.g_65_925 (reverse)

seq1  GGGGCGGCGGGGAGGGGGCTGCAGGGAGGGGGGCTGCAGGGAGGGGGGCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGGGAGGGGGGCTGCAAGGTGTAAGCTGAATGAAGAACAGGTTTATAC  100
              |||| |||||||||||||||||||||||||||||||||||||
seq2  --------GGGGCCTGCAAGGTGTAAGCTGAATGAAGAACAGGTTTATAC  42

seq1  TGAAAATCCCTGCTTCAGCTGTTGGGAATTGGGTCCAAGTCAGGAGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCCCTGCTTCAGCTGTTGGGAATTGGGTCCAAGTCAGGAGGCTG  92

seq1  GAAAGTTGACAGAGGCTAAGGAGTAGGCAGAGAGGAGGCCGTACCAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTGACAGAGGCTAAGGAGTAGGCAGAGAGGAGGCCGTACCAGTGT  142

seq1  CCCAGAGGTGGAAACCGCTTAGTCTTGCTGGCTGGGCACCCAACAGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGTGGAAACCGCTTAGTCTTGCTGGCTGGGCACCCAACAGCTTG  192

seq1  TGCATGGGGTAGGGGAAAGCTTGGGTCAAGCCTGGCGACTGAGTCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGGTAGGGGAAAGCTTGGGTCAAGCCTGGCGACTGAGTCCAGCC  242

seq1  CGAGCTTCTAGGTAGACCCAGTGAGGGAGTTAGAAGAGGTCTGGGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTTCTAGGTAGACCCAGTGAGGGAGTTAGAAGAGGTCTGGGAAGAA  292

seq1  ACCCCCGAGTTCTGATTCCCACCAAGAACCTCATCTCACAAGAACAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCGAGTTCTGATTCCCACCAAGAACCTCATCTCACAAGAACAATTA  342

seq1  TGAGTCCGGAGCCTGCCTCAAAACTACAAACGCCGAAACCATTTAATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCGGAGCCTGCCTCAAAACTACAAACGCCGAAACCATTTAATGAG  392

seq1  CCCTCCCGGATGTTCCTGCCCCCTCAGATGTGGTTCTCCTTACCAATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCGGATGTTCCTGCCCCCTCAGATGTGGTTCTCCTTACCAATGGC  442

seq1  CTTCTTCTCATCCTCCAAGAACCACTTGAGCTGTGAGATCAACCTGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCATCCTCCAAGAACCACTTGAGCTGTGAGATCAACCTGTCAC  492

seq1  CCTTTCGGCTCCCGAAGAATTCGCAGTTGGCCCTGAGAGCAAGCAGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCGGCTCCCGAAGAATTCGCAGTTGGCCCTGAGAGCAAGCAGGTAG  542

seq1  AGCGCCAGGCTGCCCCCGGAAAGTTTGGGCTGGCAACTACTGTTATCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCAGGCTGCCCCCGGAAAGTTTGGGCTGGCAACTACTGTTATCATC  592

seq1  GCTGGAGGTGGACCTAAGACGAGGCAAGACAAGAGAACCTTTGTAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGTGGACCTAAGACGAGGCAAGACAAGAGAACCTTTGTAAGAAG  642

seq1  GTGCTCCCCTGAGAAGCCAGGCTTGGCCCACACTAAGGTCACAAAGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCCCTGAGAAGCCAGGCTTGGCCCACACTAAGGTCACAAAGTGGA  692

seq1  ATTAGCAGTCAGCTGTGCTGGTATGAGGTGCATGCCACAGATTCTTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGTCAGCTGTGCTGGTATGAGGTGCATGCCACAGATTCTTCAAA  742

seq1  AGAAGAAAGGTGAGGTAAGTCAAGGGTAAAACACAAAGGTGCCTACATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGGTGAGGTAAGTCAAGGGTAAAACACAAAGGTGCCTACATCC  792

seq1  ACATCATACAGTTTGACCCCCGTTTGCCCATGAACTCTCTCCTTTATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATACAGTTTGACCCCCGTTTGCCCATGAACTCTCTCCTTTATTTT  842

seq1  CTCTCCCTTCCCTGAATTC  919
      |||||||||||||||||||
seq2  CTCTCCCTTCCCTGAATTC  861